Trevor Felix Bedford (Trevor Bedford)

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 44

Top Topics

Antimicrobial Resistance

Helicobacter Pylori

Top Venues

bioRxiv : the preprint server for biology

Science (New York, N.Y.)

This page only lists publications with an associated author ORCID identifier.

Publications

Nicola Felix Müller, Remco R Bouckaert, Chieh-Hsi Wu, Trevor Felix Bedford
MASCOT-Skyline integrates population and migration dynamics to enhance phylogeographic reconstructions. bioRxiv : the preprint server for biology (2024)
Francesco Parino, Emanuele Cristina Gustani-Buss, Trevor Felix Bedford, Marc A Suchard, Nídia Sequeira Trovão, Andrew Rambaut, Vittoria Colizza, Chiara Poletto, Philippe Lemey
Integrating dynamical modeling and phylogeographic inference to characterize global influenza circulation. medRxiv : the preprint server for health sciences (2024)
Sravani Nanduri, Allison Black, Trevor Felix Bedford, John Huddleston
Dimensionality reduction distills complex evolutionary relationships in seasonal influenza and SARS-CoV-2. bioRxiv : the preprint server for biology (2024)
Ashley E Kim, Julia C Bennett, Kyle Luiten, Jessica A O'Hanlon, Caitlin R Wolf, Ariana Magedson, Peter D Han, Zack Acker, Lani Regelbrugge, Kathryn M McCaffrey, Jeremey Stone, David Reinhart, Benjamin J Capodanno, Stephen S Morse, Trevor Felix Bedford, Janet A Englund, Michael Boeckh, Lea M Starita, Timothy M Uyeki, Marco Carone, Ana Weil, Helen Y Chu
Comparative Diagnostic Utility of SARS-CoV-2 Rapid Antigen and Molecular Testing in a Community Setting. The Journal of infectious diseases 230 (2) (2024)
Andrea N Loes, Rosario Araceli L Tarabi, John Huddleston, Lisa Touyon, Sook San Wong, Samuel M S Cheng, Nancy Hiu Lan Leung, William W Hannon, Trevor Felix Bedford, Sarah E Cobey, Benjamin John Cowling, Jesse D Bloom
High-throughput sequencing-based neutralization assay reveals how repeated vaccinations impact titers to recent human H1N1 influenza strains. bioRxiv : the preprint server for biology (2024)
Andrea N Loes, Rosario Araceli L Tarabi, John Huddleston, Lisa Touyon, Sook San Wong, Samuel M S Cheng, Nancy Hiu Lan Leung, William W Hannon, Trevor Felix Bedford, Sarah E Cobey, Benjamin John Cowling, Jesse D Bloom
High-throughput sequencing-based neutralization assay reveals how repeated vaccinations impact titers to recent human H1N1 influenza strains. bioRxiv : the preprint server for biology (2024)
Nicola Felix Müller, Remco R Bouckaert, Chieh-Hsi Wu, Trevor Felix Bedford
MASCOT-Skyline integrates population and migration dynamics to enhance phylogeographic reconstructions. bioRxiv : the preprint server for biology (2024)
Francesco Parino, Emanuele Cristina Gustani-Buss, Trevor Felix Bedford, Marc A Suchard, Nídia Sequeira Trovão, Andrew Rambaut, Vittoria Colizza, Chiara Poletto, Philippe Lemey
Integrating dynamical modeling and phylogeographic inference to characterize global influenza circulation. medRxiv : the preprint server for health sciences (2024)
Ashley E Kim, Julia C Bennett, Kyle Luiten, Jessica A O'Hanlon, Caitlin R Wolf, Ariana Magedson, Peter D Han, Zack Acker, Lani Regelbrugge, Kathryn M McCaffrey, Jeremey Stone, David Reinhart, Benjamin J Capodanno, Stephen S Morse, Trevor Felix Bedford, Janet A Englund, Michael Boeckh, Lea M Starita, Timothy M Uyeki, Marco Carone, Ana Weil, Helen Y Chu
Comparative diagnostic utility of SARS-CoV-2 rapid antigen and molecular testing in a community setting. The Journal of infectious diseases (2024)
Nicola Felix Müller, Remco R Bouckaert, Chieh-Hsi Wu, Trevor Felix Bedford
MASCOT-Skyline integrates population and migration dynamics to enhance phylogeographic reconstructions. bioRxiv : the preprint server for biology (2024)
Frances C Welsh, Rachel T Eguia, Juhye M Lee, Hugh K Haddox, Jared Galloway, Nguyen Van Vinh Chau, Andrea N Loes, John Huddleston, Timothy C Yu, Mai Quynh Le, Nguyen T D Nhat, Nguyen Thi Le Thanh, Alexander L Greninger, Helen Y Chu, Janet A Englund, Trevor Felix Bedford, Frederick A Matsen, Maciej F Boni, Jesse D Bloom
Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin. bioRxiv : the preprint server for biology (2023)
Frances C Welsh, Rachel T Eguia, Juhye M Lee, Hugh K Haddox, Jared Galloway, Nguyen Van Vinh Chau, Andrea N Loes, John Huddleston, Timothy C Yu, Mai Quynh Le, Nguyen T D Nhat, Nguyen Thi Le Thanh, Alexander L Greninger, Helen Y Chu, Janet A Englund, Trevor Felix Bedford, Frederick A Matsen, Maciej F Boni, Jesse D Bloom
Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin. bioRxiv : the preprint server for biology (2023)
Frances C Welsh, Rachel T Eguia, Juhye M Lee, Hugh K Haddox, Jared Galloway, Nguyen Van Vinh Chau, Andrea N Loes, John Huddleston, Timothy C Yu, Mai Quynh Le, Nguyen T D Nhat, Nguyen Thi Le Thanh, Alexander L Greninger, Helen Y Chu, Janet A Englund, Trevor Felix Bedford, Frederick A Matsen, Maciej F Boni, Jesse D Bloom
Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin. bioRxiv : the preprint server for biology (2023)
Frances C Welsh, Rachel T Eguia, Juhye M Lee, Hugh K Haddox, Jared Galloway, Nguyen Van Vinh Chau, Andrea N Loes, John Huddleston, Timothy C Yu, Mai Quynh Le, Nguyen T D Nhat, Nguyen Thi Le Thanh, Alexander L Greninger, Helen Y Chu, Janet A Englund, Trevor Felix Bedford, Frederick A Matsen, Maciej F Boni, Jesse D Bloom
Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin. bioRxiv : the preprint server for biology (2023)
Frances C Welsh, Rachel T Eguia, Juhye M Lee, Hugh K Haddox, Jared Galloway, Nguyen Van Vinh Chau, Andrea N Loes, John Huddleston, Timothy C Yu, Mai Quynh Le, Nguyen T D Nhat, Nguyen Thi Le Thanh, Alexander L Greninger, Helen Y Chu, Janet A Englund, Trevor Felix Bedford, Frederick A Matsen, Maciej F Boni, Jesse D Bloom
Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin. bioRxiv : the preprint server for biology (2023)
Frances C Welsh, Rachel T Eguia, Juhye M Lee, Hugh K Haddox, Jared Galloway, Nguyen Van Vinh Chau, Andrea N Loes, John Huddleston, Timothy C Yu, Mai Quynh Le, Nguyen T D Nhat, Nguyen Thi Le Thanh, Alexander L Greninger, Helen Y Chu, Janet A Englund, Trevor Felix Bedford, Frederick A Matsen, Maciej F Boni, Jesse D Bloom
Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin. bioRxiv : the preprint server for biology (2023)
Frances C Welsh, Rachel T Eguia, Juhye M Lee, Hugh K Haddox, Jared Galloway, Nguyen Van Vinh Chau, Andrea N Loes, John Huddleston, Timothy C Yu, Mai Quynh Le, Nguyen T D Nhat, Nguyen Thi Le Thanh, Alexander L Greninger, Helen Y Chu, Janet A Englund, Trevor Felix Bedford, Frederick A Matsen, Maciej F Boni, Jesse D Bloom
Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin. bioRxiv : the preprint server for biology (2023)
Houriiyah Tegally, James Emmanuel San, Matthew Cotten, Monika Moir, Bryan Tegomoh, Gerald Mboowa, Darren P Martin, Cheryl Baxter, Arnold W Lambisia, Amadou Diallo, Daniel Gyamfi Amoako, Moussa M Diagne, Abay Sisay, Abdel Rahman N Zekri, Abdou Salam Gueye, Abdoul K Sangare, Abdoul-Salam Ouedraogo, Abdourahmane Sow, Abdualmoniem O Musa, Abdul K Sesay, Abe G Abias, Adam I Elzagheid, Adamou Lagare, Adedotun-Sulaiman Kemi, Aden Elmi Abar, Adeniji A Johnson, Adeola Fowotade, Oluwapelumi Olufemi Adeyemi, Adrienne Amuri Aziza, Agnes Juru, Ahmed M Kandeil, Ahmed Mostafa, Ahmed E O Ouma, Ahmed Sayed, Akano Kazeem, Aladje Balde, Sarel Malan, Alexander J Trotter, Allan Campbell, Alpha K Keita, Amadou Kone, Amal Bouzid, Amal Souissi, Ambrose Agweyu, Amel Naguib, Ana V Gutierrez, Anatole Nkeshimana, Andrew J Page, Anges Yadouleton, Anika Vinze, Anise N Happi, Anissa Chouikha, Arash Iranzadeh, Arisha Maharaj, Armel L Batchi-Bouyou, Arshad Ismail, Augustina Angelina Annan, Augustine Goba, Ayoade Femi, Ayotunde E Sijuwola, Marycelin Mandu Baba, Babatunde L Salako, Bamidele S Oderinde, Bankole Bolajoko, Bassirou Diarra, Belinda L Herring, Benjamin Tsofa, Jean-Bernard Lekana-Douki, Bernard Mvula, Berthe-Marie Njanpop-Lafourcade, Blessing T Marondera, Bouh Abdi Khaireh, Bourema Kouriba, Bright Adu, Brigitte Pool, Bronwyn L MacInnis, Cara E Brook, Carolyn Williamson, Cassien Nduwimana, Catherine Anscombe, Catherine B Pratt, Cathrine Scheepers, Chantal G Akoua-Koffi, Charles N Agoti, Chastel M Mapanguy, Cheikh Loucoubar, Chika Kingsley Onwuamah, Chikwe Ihekweazu, Christian Noël Malaka, Christophe Peyrefitte, Chukwa Grace, Chukwuma E Omoruyi, Clotaire D Rafaï, Collins Misita Morang'a, Cyril Oshomah Erameh, Daniel Lule Bugembe, Daniel J Bridges, Daniel Mukadi-Bamuleka, Daniel J Park, David A Rasmussen, David Baker, David James Nokes, Deogratius Ssemwanga, Derek Tshiabuila, Dominic Selorm Yao Amuzu, Dominique Goedhals, Donald S Grant, Donwilliams O Omuoyo, Dorcas Maruapula, Dorcas W Wanjohi, Ebenezer Foster-Nyarko, Eddy Kinganda Lusamaki, Edgar Simulundu, Edidah M Ong'era, Edith N Ngabana, Edward O Abworo, Edward Otieno, Edwin Shumba, Edwine W Barasa, El Bara Ahmed, Elhadi A Ahmed, Emmanuel Lokilo, Enatha Mukantwari, Eromon Philomena, Essia Belarbi, Etienne Simon-Loriere, Etilé A Anoh, Eusebio Manuel, Fabian Leendertz, Fahn M Taweh, Wasfi Fares, Fatma Abdelmoula, Faustinos T Takawira, Fawzi Derrar, Fehintola V Ajogbasile, Florette Treurnicht, Onikepe A Folarin, Francine Ntoumi, Francisca M Muyembe, Frank E Z Ragomzingba, Fred A Dratibi, Fred-Akintunwa Iyanu, Gabriel K Mbunsu, Gaetan J A Thilliez, Gemma L Kay, George O Akpede, Gert U van Zyl, Gordon A Awandare, Grace S Kpeli, Grit Schubert, Gugu P Maphalala, Hafaliana Christian Ranaivoson, Hannah E Omunakwe, Harris Onywera, Haruka Abe, Hela H Karray, Hellen Nansumba, Henda Triki, Herve Albéric Adje Kadjo, Hesham Elghazaly, Hlanai Gumbo, Hota Mathieu, Hugo Kavunga-Membo, Ibtihel Smeti, Idowu B Olawoye, Ifedayo M O Adetifa, Ikponmwosa Odia, Ilhem Boutiba Ben Boubaker, Iluoreh Ahmed Muhammad, Isaac Ssewanyana, Isatta Wurie, Iyaloo S Konstantinus, Jacqueline Wemboo Afiwa Halatoko, James Ayei, Janaki Sonoo, Jean-Claude Makangara Cigolo, Jean-Jacques M Tamfum, Jean Michel Heraud, Jeffrey G Shaffer, Jennifer Giandhari, Jennifer Musyoki, Jerome Nkurunziza, Jessica N Uwanibe, Jinal N Bhiman, Jiro Yasuda, Joana F M de Morais, Jocelyn Kiconco, John D Sandi, John Huddleston, John K Odoom, John Mwita Morobe, John O Gyapong, John T Kayiwa, Johnson C Okolie, Joicymara S Xavier, Jones Gyamfi, Joseph F Wamala, Joseph H K Bonney, Joseph Nyandwi, Josie Everatt, Joweria Nakaseegu, Joyce M Ngoi, Joyce Namulondo, Judith Uche Oguzie, Julia C Andeko, Julius Julian Lutwama, Juma J H Mogga, Justin O'Grady, Katherine J Siddle, Kathleen Victoir, Kayode T Adeyemi, Kefentse A Tumedi, Kevin S Carvalho, Khadija Said Mohammed, Koussay Dellagi, Kunda G Musonda, Kwabena Obeng Duedu, Lamia Fki-Berrajah, Lavanya Singh, Lenora M Kepler, Leon Biscornet, Leonardo de Oliveira Martins, Lucious Chabuka, Luicer Olubayo, Lul Deng Ojok, Lul Lojok Deng, Lynette Isabella Ochola-Oyier, Lynn Tyers, Madisa Mine, Magalutcheemee Ramuth, Maha Mastouri, Mahmoud M Elhefnawi, Maimouna Mbanne, Maitshwarelo I Matsheka, Malebogo Kebabonye, Mamadou Diop, Mambu Momoh, Maria da Luz Lima Mendonça, Marietjie Venter, Marietou F Paye, Martin Faye, Martin M Nyaga, Mathabo Mareka, Matoke-Muhia Damaris, Maureen W Mburu, Maximillian G Mpina, Michael Owusu, Michael R Wiley, Mirabeau Y Tatfeng, Mitoha Ondo'o Ayekaba, Mohamed Abouelhoda, Mohamed Amine Beloufa, Mohamed G Seadawy, Mohamed K Khalifa, Mooko Marethabile Matobo, Mouhamed Kane, Mounerou Salou, Mphaphi B Mbulawa, Mwenda C Mulenga, Mushal Allam, My V T Phan, Nabil Abid, Nadine Rujeni, Nadir Abuzaid, Nalia Ismael, Nancy Elguindy, Ndeye Marieme Top, Ndongo Dia, Nédio Mabunda, Nei-Yuan Hsiao, Nelson Boricó Silochi, Ngiambudulu M Francisco, Ngonda Saasa, Nicholas Bbosa, Nickson Murunga, Nicksy Gumede, Nicole Wolter, Nikita Sitharam, Nnaemeka Ndodo, Nnennaya A Ajayi, Noël Tordo, Nokuzola Mbhele, Norosoa H Razanajatovo, Nosamiefan Iguosadolo, Nwando Mba, Ojide C Kingsley, Okogbenin Sylvanus, Oladiji Femi, Moses Olubusuyi Adewumi, Olumade Testimony, Olusola A Ogunsanya, Oluwatosin Fakayode, Onwe E Ogah, Ope-Ewe Oludayo, Ousmane Faye, Pamela Smith-Lawrence, Pascale Ondoa, Patrice Combe, Patricia Nabisubi, Patrick Semanda, Paul E Oluniyi, Paulo Arnaldo, Peter Kojo Quashie, Peter O Okokhere, Philip Bejon, Philippe Dussart, Phillip A Bester, Placide K Mbala, Pontiano Kaleebu, Priscilla Abechi, Rabeh El Shesheny, Rageema Joseph, Ramy Karam Aziz, René G Essomba, Reuben Ayivor-Djanie, Richard Njouom, Richard Odame Phillips, Richmond Gorman, Robert A Kingsley, Rosa Maria D E S A Neto Rodrigues, Rosemary Ajuma Audu, Rosina A A Carr, Saba Gargouri, Saber Masmoudi, Sacha Bootsma, Safietou Sankhe, Sahra Isse Mohamed, Saibu Femi, Salma Mhalla, Salome Hosch, Samar Kamal Kassim, Samar Metha, Sameh Trabelsi, Sara Hassan Agwa, Sarah Wambui Mwangi, Ousmane A Koita, Sheila Makiala-Mandanda, Sherihane Aryeetey, Shymaa S Ahmed, Side Mohamed Ahmed, Siham Elhamoumi, Sikhulile Moyo, Silvia Lutucuta, Simani Gaseitsiwe, Simbirie Jalloh, Soa Fy Andriamandimby, Sobajo Oguntope, Solène Grayo, Sonia Etenna Lekana-Douki, Sophie Prosolek, Soumeya Ouangraoua, Stephanie van Wyk, Stephen F Schaffner, Stephen Kanyerezi, Steve Ahuka-Mundeke, Steven Rudder, Sureshnee Pillay, Susan Nabadda, Sylvie Behillil, Sylvie L Budiaki, Sylvie van der Werf, Tapfumanei Mashe, Thabo Mohale, Thanh Le Viet, Thirumalaisamy P Velavan, Tobias Schindler, Tongai Gibson Maponga, Trevor Felix Bedford, Ugochukwu J Anyaneji, Chinedu A Ugwu, Upasana Ramphal, Uwem Etop George, Vincent Enouf, Vishvanath Nene, Vivianne Gorova, Wael H Roshdy, Wasim Abdul Karim, William K Ampofo, Wolfgang Preiser, Wonderful T Choga, Yahaya Ali Ahmed, Yajna Ramphal, Yaw Bediako, Yeshnee Naidoo, Yvan Butera, Zaydah R de Laurent, null null, Ahmed E O Ouma, Anne von Gottberg, George Githinji, Matshidiso Moeti, Oyewale Tomori, Pardis C Sabeti, Amadou A Sall, Samuel O Oyola, Yenew K Tebeje, Sofonias K Tessema, Tulio de Oliveira, Christian T Happi, Richard J Lessells, John Nkengasong, Eduan Wilkinson
The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance. Science (New York, N.Y.) 378 (6615) (2022)
Kathryn E Kistler, Trevor Felix Bedford
Correction: Evidence for adaptive evolution in the receptor-binding domain of seasonal coronaviruses OC43 and 229e. eLife 11 (2022)
Rachel E Geyer, Jack Henry Kotnik, Victoria Rachel Lyon, Elisabeth Brandstetter Figueroa, Monica L Zigman Suchsland, Peter D Han, Chelsey Graham, Misja Ilcisin, Ashley E Kim, Helen Y Chu, Deborah A Nickerson, Joshua T Schiffer, Trevor Felix Bedford, Barry R Lutz, Matthew James Thompson
Diagnostic Accuracy of an At-Home, Rapid Self-test for Influenza: Prospective Comparative Accuracy Study. JMIR public health and surveillance 8 (2) (2022)
Nicola Felix Müller, Kathryn E Kistler, Trevor Felix Bedford
Recombination patterns in coronaviruses. bioRxiv : the preprint server for biology (2021)
Kathryn E Kistler, John Huddleston, Trevor Felix Bedford
Rapid and parallel adaptive mutations in spike S1 drive clade success in SARS-CoV-2. bioRxiv : the preprint server for biology (2021)
Katarina M Braun, Gage Kahl Moreno, Cassia Wagner, Molly A Accola, William M Rehrauer, David A Baker, Katia Koelle, David H O'Connor, Trevor Felix Bedford, Thomas C Friedrich, Louise H Moncla
Acute SARS-CoV-2 infections harbor limited within-host diversity and transmit via tight transmission bottlenecks. PLoS pathogens 17 (8) (2021)
Louise H Moncla, Allison Black, Chase DeBolt, Misty Lang, Nicholas R Graff, Ailyn C Pérez-Osorio, Nicola F Müller, Dirk Haselow, Scott Lindquist, Trevor Felix Bedford
Repeated introductions and intensive community transmission fueled a mumps virus outbreak in Washington State. eLife 10 (2021)
Garrett A Perchetti, Haiying Zhu, Margaret G Mills, Lasata Shrestha, Cassia Wagner, Shah Mohamed Bakhash, Michelle J Lin, Hong Xie, Meei-Li Huang, Patrick C Mathias, Trevor Felix Bedford, Keith R Jerome, Alexander L Greninger, Pavitra Roychoudhury
Specific allelic discrimination of N501Y and other SARS-CoV-2 mutations by ddPCR detects B.1.1.7 lineage in Washington State. Journal of medical virology 93 (10) (2021)
Nicola Felix Müller, Cassia Wagner, Chris D Frazar, Pavitra Roychoudhury, Jover Lee, Louise H Moncla, Benjamin Pelle, Matthew Richardson, Erica Ryke, Hong Xie, Lasata Shrestha, Amin Addetia, Victoria Mallett Rachleff, Nicole A P Lieberman, Meei-Li W Huang, Romesh Gautom, Geoff C Melly, Brian Hiatt, Philip Dykema, Amanda Adler, Elisabeth Brandstetter, Peter D Han, Kairsten Fay, Misja Ilcisin, Kirsten Lacombe, Thomas R Sibley, Melissa Truong, Caitlin R Wolf, Michael J Boeckh, Janet A Englund, Michael Famulare, Barry R Lutz, Mark J Rieder, Matthew Thompson, Jeffrey S Duchin, Joshua T Schiffer, Helen Y Chu, Jay Shendure, Keith R Jerome, Scott Lindquist, Alexander L Greninger, Deborah A Nickerson, Trevor Felix Bedford
Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State. Science translational medicine 13 (595) (2021)
Kathryn E Kistler, Trevor Felix Bedford
Evidence for adaptive evolution in the receptor-binding domain of seasonal coronaviruses OC43 and 229e. eLife 10 (2021)
Anne Emanuels, Jessica Heimonen, Jessica O'Hanlon, Ashley E Kim, Naomi Wilcox, Denise J McCulloch, Elisabeth Brandstetter, Caitlin R Wolf, Jennifer K Logue, Peter D Han, Brian Pfau, Kira L Newman, James P Hughes, Michael L Jackson, Timothy M Uyeki, Michael Boeckh, Lea M Starita, Deborah A Nickerson, Trevor Felix Bedford, Janet A Englund, Helen Y Chu
Remote Household Observation for Noninfluenza Respiratory Viral Illness. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 73 (11) (2021)
Jessica Heimonen, Denise J McCulloch, Jessica O'Hanlon, Ashley E Kim, Anne Emanuels, Naomi Wilcox, Elisabeth Brandstetter, Mark Stewart, David McCune, Scott Fry, Sean Parsons, James P Hughes, Michael L Jackson, Timothy M Uyeki, Michael J Boeckh, Joshua T Schiffer, Trevor Felix Bedford, Janet A Englund, Helen Y Chu
A remote household-based approach to influenza self-testing and antiviral treatment. Influenza and other respiratory viruses 15 (4) (2021)
Xianding Deng, Wei Gu, Scot Federman, Louis du Plessis, Oliver George Pybus, Nuno Rodrigues Faria, Candace Wang, Guixia Yu, Brian Bushnell, Chao-Yang Pan, Hugo Guevara, Alicia Sotomayor Gonzalez, Kelsey C Zorn, Allan Gopez, Venice Servellita, Elaine Hsu, Steve Miller, Trevor Felix Bedford, Alexander L Greninger, Pavitra Roychoudhury, Joshua T Schiffer, Michael Famulare, Helen Y Chu, Jay Shendure, Keith R Jerome, Catie Anderson, Karthik Gangavarapu, Mark Zeller, Emily Spencer, Kristian G Andersen, Duncan R MacCannell, Clinton R Paden, Yan Li, Jing Zhang, Suxiang Tong, Gregory Armstrong, Scott Morrow, Matthew Willis, Bela T Matyas, Sundari Mase, Olivia Kasirye, Maggie Park, Godfred Masinde, Curtis Chan, Alexander Tin Han Yu, Shua J Chai, Elsa Villarino, Brandon Bonin, Debra A Wadford, Charles Y Chiu
Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California. Science (New York, N.Y.) 369 (6503) (2020)
Louise H Moncla, Trevor Felix Bedford, Philippe Dussart, Srey Viseth Horm, Sareth Rith, Philippe Buchy, Erik Albert Karlsson, Lifeng Li, Yongmei Liu, Huachen Zhu, Yi Guan, Thomas C Friedrich, Paul F Horwood
Quantifying within-host diversity of H5N1 influenza viruses in humans and poultry in Cambodia. PLoS pathogens 16 (1) (2020)
John Huddleston, John R Barnes, Thomas Rowe, Xiyan Xu, Rebecca J Kondor, David E Wentworth, Lynne Whittaker, Burcu Ermetal, Rodney Stuart Daniels, John W McCauley, Seiichiro Fujisaki, Kazuya Nakamura, Noriko Kishida, Shinji Watanabe, Hideki Hasegawa, Ian Barr, Kanta Subbarao, Pierre Barrat-Charlaix, Richard A Neher, Trevor Felix Bedford
Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution. eLife 9 (2020)
Trevor Felix Bedford, Alexander L Greninger, Pavitra Roychoudhury, Joshua T Schiffer, Michael Famulare, Meei-Li W Huang, Arun Nalla, Gregory Pepper, Adam Reinhardt, Hong Xie, Lasata Shrestha, Truong N Nguyen, Amanda Adler, Elisabeth Brandstetter, Shari Cho, Danielle Giroux, Peter D Han, Kairsten Fay, Chris D Frazar, Misja Ilcisin, Kirsten Lacombe, Jover Lee, Anahita Kiavand, Matthew Richardson, Thomas R Sibley, Melissa Truong, Caitlin R Wolf, Deborah A Nickerson, Mark J Rieder, Janet A Englund, null null, James Hadfield, Emma B Hodcroft, John Huddleston, Louise H Moncla, Nicola Felix Müller, Richard A Neher, Xianding Deng, Wei Gu, Scot Federman, Charles Y Chiu, Jeffrey S Duchin, Romesh Gautom, Geoff C Melly, Brian Hiatt, Philip Dykema, Scott Lindquist, Krista Queen, Ying Tao, Anna Uehara, Suxiang Tong, Duncan R MacCannell, Gregory L Armstrong, Geoffrey Stuart Baird, Helen Y Chu, Jay Shendure, Keith R Jerome
Cryptic transmission of SARS-CoV-2 in Washington state. Science (New York, N.Y.) 370 (6516) (2020)
Laura K Jackson, Barney I Potter, Sean Schneider, Matthew Fitzgibbon, Kris Blair, Hajirah Farah, Uma Krishna, Trevor Felix Bedford, Richard M Peek, Nina R Salama
Helicobacter pylori diversification during chronic infection within a single host generates sub-populations with distinct phenotypes. PLoS pathogens 16 (12) (2020)
Sidney M Bell, Leah Katzelnick, Trevor Felix Bedford
Dengue genetic divergence generates within-serotype antigenic variation, but serotypes dominate evolutionary dynamics. eLife 8 (2019)
Juhye M Lee, Rachel Eguia, Seth J Zost, Saket Choudhary, Patrick C Wilson, Trevor Felix Bedford, Terry Stevens-Ayers, Michael Boeckh, Aeron C Hurt, Seema S Lakdawala, Scott E Hensley, Jesse D Bloom
Mapping person-to-person variation in viral mutations that escape polyclonal serum targeting influenza hemagglutinin. eLife 8 (2019)
James Hadfield, Anderson Fernandes Brito, Daniele M Swetnam, Chantal B F Vogels, Ryan E Tokarz, Kristian G Andersen, Ryan C Smith, Trevor Felix Bedford, Nathan D Grubaugh
Twenty years of West Nile virus spread and evolution in the Americas visualized by Nextstrain. PLoS pathogens 15 (10) (2019)
Yq Shirleen Soh, Louise H Moncla, Rachel Eguia, Trevor Felix Bedford, Jesse D Bloom
Comprehensive mapping of adaptation of the avian influenza polymerase protein PB2 to humans. eLife 8 (2019)
Gytis Dudas, Luiz Max Carvalho, Andrew Rambaut, Trevor Felix Bedford
MERS-CoV spillover at the camel-human interface. eLife 7 (2018)
Frank T Wen, Sidney M Bell, Trevor Felix Bedford, Sarah E Cobey
Estimating Vaccine-Driven Selection in Seasonal Influenza. Viruses 10 (9) (2018)
Gytis Dudas, Luiz Max Carvalho, Andrew Rambaut, Trevor Felix Bedford
Correction: MERS-CoV spillover at the camel-human interface. eLife 7 (2018)
Richard A Neher, Trevor Felix Bedford
Real-Time Analysis and Visualization of Pathogen Sequence Data. Journal of clinical microbiology 56 (11) (2018)
Pinky Langat, Jayna Ragwani, Gytis Dudas, Thomas A Bowden, Stephanie Edwards, Astrid Gall, Trevor Felix Bedford, Andrew Rambaut, Rodney S Daniels, Colin A Russell, Oliver G Pybus, John McCauley, Paul Kellam, Simon J Watson
Genome-wide evolutionary dynamics of influenza B viruses on a global scale. PLoS pathogens 13 (12) (2017)
Connor O McCoy, Trevor Felix Bedford, Vladimir N Minin, Philip G Bradley, Harlan S Robins, Frederick A Matsen
Quantifying evolutionary constraints on B-cell affinity maturation. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 370 (1676) (2016)