Thushan I de Silva (Thushan de Silva)

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 39

Top Topics

Respiratory Syndrome Coronavirus

Chronic Rhinosinusitis

Stem Cell Transplantation

Immune Response

Top Venues

Nature communications

Nature immunology

This page only lists publications with an associated author ORCID identifier.

Publications

Felicity Liew, Claudia Efstathiou, Sara Fontanella, Matthew Richardson, Ruth Saunders, Dawid Swieboda, Jasmin K Sidhu, Stephanie Ascough, Shona C Moore, Noura Mohamed, Jose Nunag, Clara King, Olivia C Leavy, Omer Elneima, Hamish J C McAuley, Aarti Shikotra, Amisha Singapuri, Marco Sereno, Victoria C Harris, Linzy Houchen-Wolloff, Neil J Greening, Nazir I Lone, Matthew Thorpe, Alfred Arthur Roger Thompson, Sarah L Rowland-Jones, Annemarie B Docherty, James D Chalmers, Ling-Pei Ho, Alex Robert Horsley, Betty Raman, Krisnah Poinasamy, Michael Marks, Onn Min Kon, Luke S G Howard, Daniel G Wootton, Jennifer K Quint, Thushan I de Silva, Antonia Ho, Christopher Chiu, Ewen M Harrison, William Greenhalf, John Kenneth Baillie, Malcolm Gracie Semple, Lance Turtle, Rachael Andrea Evans, Louise V Wain, Christopher Brightling, Ryan S Thwaites, Peter J M Openshaw, null null, null null
Large-scale phenotyping of patients with long COVID post-hospitalization reveals mechanistic subtypes of disease. Nature immunology (2024)
Jennifer N Hall, Edwin P Armitage, Elina Senghore, Saffiatou Darboe, Momodou Barry, Janko Camara, Sulayman Bah, Alexander J Keeley, James S McCarthy, Pierre R Smeesters, Claire E Turner, Thomas C Darton, Michael Marks, Adrienn Angyal, Thushan I de Silva
Molecular methods enhance the detection of pyoderma-related Streptococcus pyogenes and emm-type distribution in children. The Journal of infectious diseases (2024)
Sheikh Jarju, Rhys D Wenlock, Madikoi Danso, Dawda Jobe, Ya Jankey Jagne, Alansana Darboe, Michelle Kumado, Yusupha Jallow, Mamlie Touray, Ebrima A Ceesay, Hoja Gaye, Biran Gaye, Abdoulie Tunkara, Sheriff Kandeh, Marie Gomes, Ellen Lena Sylva, Fatoumata Toure, Hailey R Hornsby, Benjamin B Lindsey, Martin J Nicklin, Jon R Sayers, Abdul K Sesay, Adam Kucharski, David Hodgson, Beate Kampmann, Thushan I de Silva
High SARS-CoV-2 incidence and asymptomatic fraction during Delta and Omicron BA.1 waves in The Gambia. Nature communications 15 (1) (2024)
Sheikh Jarju, Rhys D Wenlock, Madikoi Danso, Dawda Jobe, Ya Jankey Jagne, Alansana Darboe, Michelle Kumado, Yusupha Jallow, Mamlie Touray, Ebrima A Ceesay, Hoja Gaye, Biran Gaye, Abdoulie Tunkara, Sheriff Kandeh, Marie Gomes, Ellen Lena Sylva, Fatoumata Toure, Hailey R Hornsby, Benjamin B Lindsey, Martin J Nicklin, Jon R Sayers, Abdul K Sesay, Adam Kucharski, David Hodgson, Beate Kampmann, Thushan I de Silva
High SARS-CoV-2 incidence and asymptomatic fraction during Delta and Omicron BA.1 waves in The Gambia. Nature communications 15 (1) (2024)
Felicity Liew, Claudia Efstathiou, Sara Fontanella, Matthew Richardson, Ruth Saunders, Dawid Swieboda, Jasmin K Sidhu, Stephanie Ascough, Shona C Moore, Noura Mohamed, Jose Nunag, Clara King, Olivia C Leavy, Omer Elneima, Hamish J C McAuley, Aarti Shikotra, Amisha Singapuri, Marco Sereno, Victoria C Harris, Linzy Houchen-Wolloff, Neil J Greening, Nazir I Lone, Matthew Thorpe, Alfred Arthur Roger Thompson, Sarah L Rowland-Jones, Annemarie B Docherty, James D Chalmers, Ling-Pei Ho, Alex Robert Horsley, Betty Raman, Krisnah Poinasamy, Michael Marks, Onn Min Kon, Luke S G Howard, Daniel G Wootton, Jennifer K Quint, Thushan I de Silva, Antonia Ho, Christopher Chiu, Ewen M Harrison, William Greenhalf, John Kenneth Baillie, Malcolm Gracie Semple, Lance Turtle, Rachael Andrea Evans, Louise V Wain, Christopher Brightling, Ryan S Thwaites, Peter J M Openshaw, null null, null null
Large-scale phenotyping of patients with long COVID post-hospitalization reveals mechanistic subtypes of disease. Nature immunology 25 (4) (2024)
Sheikh Jarju, Rhys D Wenlock, Madikoi Danso, Dawda Jobe, Ya Jankey Jagne, Alansana Darboe, Michelle Kumado, Yusupha Jallow, Mamlie Touray, Ebrima A Ceesay, Hoja Gaye, Biran Gaye, Abdoulie Tunkara, Sheriff Kandeh, Marie Gomes, Ellen Lena Sylva, Fatoumata Toure, Hailey R Hornsby, Benjamin B Lindsey, Martin J Nicklin, Jon R Sayers, Abdul K Sesay, Adam Kucharski, David Hodgson, Beate Kampmann, Thushan I de Silva
High SARS-CoV-2 incidence and asymptomatic fraction during Delta and Omicron BA.1 waves in The Gambia. Nature communications 15 (1) (2024)
Gavin Brittain, Jennifer Petrie, Kate E M Duffy, Rachel Glover, Katie Hullock, Diana Papaioannou, Elisa Roldán, Colette Beecher, Matthew Bursnall, Olga Ciccarelli, Alasdair J Coles, Cindy Cooper, Gavin Giovannoni, Ian Gabriel, Majid Kazmi, Charalampia Kyriakou, Richard Nicholas, David Paling, Andy Peniket, Neil Scolding, Eli Silber, Thushan I de Silva, Annalena Venneri, Stephen J Walters, Carolyn Anne Young, Paolo A Muraro, Basil Sharrack, John A Snowden, null null
Efficacy and safety of autologous haematopoietic stem cell transplantation versus alemtuzumab, ocrelizumab, ofatumumab or cladribine in relapsing remitting multiple sclerosis (StarMS): protocol for a randomised controlled trial. BMJ open 14 (2) (2024)
Gavin Brittain, Jennifer Petrie, Kate E M Duffy, Rachel Glover, Katie Hullock, Diana Papaioannou, Elisa Roldán, Colette Beecher, Matthew Bursnall, Olga Ciccarelli, Alasdair J Coles, Cindy Cooper, Gavin Giovannoni, Ian Gabriel, Majid Kazmi, Charalampia Kyriakou, Richard Nicholas, David Paling, Andy Peniket, Neil Scolding, Eli Silber, Thushan I de Silva, Annalena Venneri, Stephen J Walters, Carolyn Anne Young, Paolo A Muraro, Basil Sharrack, John A Snowden, null null
Efficacy and safety of autologous haematopoietic stem cell transplantation versus alemtuzumab, ocrelizumab, ofatumumab or cladribine in relapsing remitting multiple sclerosis (StarMS): protocol for a randomised controlled trial. BMJ open 14 (2) (2024)
Gavin Brittain, Jennifer Petrie, Kate E M Duffy, Rachel Glover, Katie Hullock, Diana Papaioannou, Elisa Roldán, Colette Beecher, Matthew Bursnall, Olga Ciccarelli, Alasdair J Coles, Cindy Cooper, Gavin Giovannoni, Ian Gabriel, Majid Kazmi, Charalampia Kyriakou, Richard Nicholas, David Paling, Andy Peniket, Neil Scolding, Eli Silber, Thushan I de Silva, Annalena Venneri, Stephen J Walters, Carolyn Anne Young, Paolo A Muraro, Basil Sharrack, John A Snowden, null null
Efficacy and safety of autologous haematopoietic stem cell transplantation versus alemtuzumab, ocrelizumab, ofatumumab or cladribine in relapsing remitting multiple sclerosis (StarMS): protocol for a randomised controlled trial. BMJ open 14 (2) (2024)
Gavin Brittain, Jennifer Petrie, Kate E M Duffy, Rachel Glover, Katie Hullock, Diana Papaioannou, Elisa Roldán, Colette Beecher, Matthew Bursnall, Olga Ciccarelli, Alasdair J Coles, Cindy Cooper, Gavin Giovannoni, Ian Gabriel, Majid Kazmi, Charalampia Kyriakou, Richard Nicholas, David Paling, Andy Peniket, Neil Scolding, Eli Silber, Thushan I de Silva, Annalena Venneri, Stephen J Walters, Carolyn Anne Young, Paolo A Muraro, Basil Sharrack, John A Snowden, null null
Efficacy and safety of autologous haematopoietic stem cell transplantation versus alemtuzumab, ocrelizumab, ofatumumab or cladribine in relapsing remitting multiple sclerosis (StarMS): protocol for a randomised controlled trial. BMJ open 14 (2) (2024)
Felicity Liew, Claudia Efstathiou, Sara Fontanella, Matthew Richardson, Ruth Saunders, Dawid Swieboda, Jasmin K Sidhu, Stephanie Ascough, Shona C Moore, Noura Mohamed, Jose Nunag, Clara King, Olivia C Leavy, Omer Elneima, Hamish J C McAuley, Aarti Shikotra, Amisha Singapuri, Marco Sereno, Victoria C Harris, Linzy Houchen-Wolloff, Neil J Greening, Nazir I Lone, Matthew Thorpe, Alfred Arthur Roger Thompson, Sarah L Rowland-Jones, Annemarie B Docherty, James D Chalmers, Ling-Pei Ho, Alex Robert Horsley, Betty Raman, Krisnah Poinasamy, Michael Marks, Onn Min Kon, Luke S G Howard, Daniel G Wootton, Jennifer K Quint, Thushan I de Silva, Antonia Ho, Christopher Chiu, Ewen M Harrison, William Greenhalf, John Kenneth Baillie, Malcolm Gracie Semple, Lance Turtle, Rachael Andrea Evans, Louise V Wain, Christopher Brightling, Ryan S Thwaites, Peter J M Openshaw, null null, null null
Large-scale phenotyping of patients with long COVID post-hospitalization reveals mechanistic subtypes of disease. Nature immunology 25 (4) (2024)
Felicity Liew, Claudia Efstathiou, Sara Fontanella, Matthew Richardson, Ruth Saunders, Dawid Swieboda, Jasmin K Sidhu, Stephanie Ascough, Shona C Moore, Noura Mohamed, Jose Nunag, Clara King, Olivia C Leavy, Omer Elneima, Hamish J C McAuley, Aarti Shikotra, Amisha Singapuri, Marco Sereno, Victoria C Harris, Linzy Houchen-Wolloff, Neil J Greening, Nazir I Lone, Matthew Thorpe, Alfred Arthur Roger Thompson, Sarah L Rowland-Jones, Annemarie B Docherty, James D Chalmers, Ling-Pei Ho, Alex Robert Horsley, Betty Raman, Krisnah Poinasamy, Michael Marks, Onn Min Kon, Luke S G Howard, Daniel G Wootton, Jennifer K Quint, Thushan I de Silva, Antonia Ho, Christopher Chiu, Ewen M Harrison, William Greenhalf, John Kenneth Baillie, Malcolm Gracie Semple, Lance Turtle, Rachael Andrea Evans, Louise V Wain, Christopher Brightling, Ryan S Thwaites, Peter J M Openshaw, null null, null null
Large-scale phenotyping of patients with long COVID post-hospitalization reveals mechanistic subtypes of disease. Nature immunology 25 (4) (2024)
Gavin Brittain, Jennifer Petrie, Kate E M Duffy, Rachel Glover, Katie Hullock, Diana Papaioannou, Elisa Roldán, Colette Beecher, Matthew Bursnall, Olga Ciccarelli, Alasdair J Coles, Cindy Cooper, Gavin Giovannoni, Ian Gabriel, Majid Kazmi, Charalampia Kyriakou, Richard Nicholas, David Paling, Andy Peniket, Neil Scolding, Eli Silber, Thushan I de Silva, Annalena Venneri, Stephen J Walters, Carolyn Anne Young, Paolo A Muraro, Basil Sharrack, John A Snowden, null null
Efficacy and safety of autologous haematopoietic stem cell transplantation versus alemtuzumab, ocrelizumab, ofatumumab or cladribine in relapsing remitting multiple sclerosis (StarMS): protocol for a randomised controlled trial. BMJ open 14 (2) (2024)
Felicity Liew, Claudia Efstathiou, Sara Fontanella, Matthew Richardson, Ruth Saunders, Dawid Swieboda, Jasmin K Sidhu, Stephanie Ascough, Shona C Moore, Noura Mohamed, Jose Nunag, Clara King, Olivia C Leavy, Omer Elneima, Hamish J C McAuley, Aarti Shikotra, Amisha Singapuri, Marco Sereno, Victoria C Harris, Linzy Houchen-Wolloff, Neil J Greening, Nazir I Lone, Matthew Thorpe, Alfred Arthur Roger Thompson, Sarah L Rowland-Jones, Annemarie B Docherty, James D Chalmers, Ling-Pei Ho, Alex Robert Horsley, Betty Raman, Krisnah Poinasamy, Michael Marks, Onn Min Kon, Luke S G Howard, Daniel G Wootton, Jennifer K Quint, Thushan I de Silva, Antonia Ho, Christopher Chiu, Ewen M Harrison, William Greenhalf, John Kenneth Baillie, Malcolm Gracie Semple, Lance Turtle, Rachael Andrea Evans, Louise V Wain, Christopher Brightling, Ryan S Thwaites, Peter J M Openshaw, null null, null null
Large-scale phenotyping of patients with long COVID post-hospitalization reveals mechanistic subtypes of disease. Nature immunology 25 (4) (2024)
Gavin Brittain, Jennifer Petrie, Kate E M Duffy, Rachel Glover, Katie Hullock, Diana Papaioannou, Elisa Roldán, Colette Beecher, Matthew Bursnall, Olga Ciccarelli, Alasdair J Coles, Cindy Cooper, Gavin Giovannoni, Ian Gabriel, Majid Kazmi, Charalampia Kyriakou, Richard Nicholas, David Paling, Andy Peniket, Neil Scolding, Eli Silber, Thushan I de Silva, Annalena Venneri, Stephen J Walters, Carolyn Anne Young, Paolo A Muraro, Basil Sharrack, John A Snowden, null null
Efficacy and safety of autologous haematopoietic stem cell transplantation versus alemtuzumab, ocrelizumab, ofatumumab or cladribine in relapsing remitting multiple sclerosis (StarMS): protocol for a randomised controlled trial. BMJ open 14 (2) (2024)
Hailey R Hornsby, Alexander R Nicols, Stéphanie Longet, Chang Liu, Adriana Tomic, Adrienn Angyal, Barbara Kronsteiner, Jessica K Tyerman, Tom Tipton, Peijun Zhang, Marta Gallis, Piyada Supasa, Muneeswaran Selvaraj, Priyanka Abraham, Isabel Neale, Mohammad Ali, Natalie A Barratt, Jeremy M Nell, Lotta Gustafsson, Scarlett Strickland, Irina Grouneva, Timothy Rostron, Shona C Moore, Luisa M Hering, Susan L Dobson, Sagida Bibi, Juthathip Mongkolsapaya, Teresa Lambe, Dan Wootton, Victoria Hall, Susan Hopkins, Tao Dong, Eleanor Barnes, Gavin R Screaton, null null, Alex Richter, Lance C W Turtle, Sarah L Rowland-Jones, Miles Carroll, Christopher J A Duncan, Paul Klenerman, Susanna J Dunachie, Rebecca P Payne, Thushan I de Silva
Omicron infection following vaccination enhances a broad spectrum of immune responses dependent on infection history. Nature communications 14 (1) (2023)
Varsha Gupta, Sokratis Kariotis, Mohammed D Rajab, Niamh Errington, Elham Alhathli, Emmanuel Jammeh, Martin Brook, Naomi Meardon, Paul J Collini, Joby Cole, Jim M Wild, Steven G Hershman, Ali Javed, Alfred Arthur Roger Thompson, Thushan I de Silva, Euan A Ashley, Dennis Wang, Allan Lawrie
Unsupervised machine learning to investigate trajectory patterns of COVID-19 symptoms and physical activity measured via the MyHeart Counts App and smart devices. NPJ digital medicine 6 (1) (2023)
Lance C W Turtle, Mathew Thorpe, Thomas M Drake, Maaike C Swets, Carlo Palmieri, Clark D Russell, Antonia Ho, Stephen J Aston, Daniel G Wootton, Alex Richter, Thushan I de Silva, Hayley E Hardwick, Gary Leeming, Andy Law, Peter J M Openshaw, Ewen M Harrison, null null, John Kenneth Baillie, Malcolm Gracie Semple, Annemarie B Docherty
Outcome of COVID-19 in hospitalised immunocompromised patients: An analysis of the WHO ISARIC CCP-UK prospective cohort study. PLoS medicine 20 (1) (2023)
Lance C W Turtle, Mathew Thorpe, Thomas M Drake, Maaike C Swets, Carlo Palmieri, Clark D Russell, Antonia Ho, Stephen J Aston, Daniel G Wootton, Alex Richter, Thushan I de Silva, Hayley E Hardwick, Gary Leeming, Andy Law, Peter J M Openshaw, Ewen M Harrison, null null, John Kenneth Baillie, Malcolm Gracie Semple, Annemarie B Docherty
Outcome of COVID-19 in hospitalised immunocompromised patients: An analysis of the WHO ISARIC CCP-UK prospective cohort study. PLoS medicine 20 (1) (2023)
Lance C W Turtle, Mathew Thorpe, Thomas M Drake, Maaike C Swets, Carlo Palmieri, Clark D Russell, Antonia Ho, Stephen J Aston, Daniel G Wootton, Alex Richter, Thushan I de Silva, Hayley E Hardwick, Gary Leeming, Andy Law, Peter J M Openshaw, Ewen M Harrison, null null, John Kenneth Baillie, Malcolm Gracie Semple, Annemarie B Docherty
Outcome of COVID-19 in hospitalised immunocompromised patients: An analysis of the WHO ISARIC CCP-UK prospective cohort study. PLoS medicine 20 (1) (2023)
Lance C W Turtle, Mathew Thorpe, Thomas M Drake, Maaike C Swets, Carlo Palmieri, Clark D Russell, Antonia Ho, Stephen J Aston, Daniel G Wootton, Alex Richter, Thushan I de Silva, Hayley E Hardwick, Gary Leeming, Andy Law, Peter J M Openshaw, Ewen M Harrison, null null, John Kenneth Baillie, Malcolm Gracie Semple, Annemarie B Docherty
Outcome of COVID-19 in hospitalised immunocompromised patients: An analysis of the WHO ISARIC CCP-UK prospective cohort study. PLoS medicine 20 (1) (2023)
Lance C W Turtle, Mathew Thorpe, Thomas M Drake, Maaike C Swets, Carlo Palmieri, Clark D Russell, Antonia Ho, Stephen J Aston, Daniel G Wootton, Alex Richter, Thushan I de Silva, Hayley E Hardwick, Gary Leeming, Andy Law, Peter J M Openshaw, Ewen M Harrison, null null, John Kenneth Baillie, Malcolm Gracie Semple, Annemarie B Docherty
Outcome of COVID-19 in hospitalised immunocompromised patients: An analysis of the WHO ISARIC CCP-UK prospective cohort study. PLoS medicine 20 (1) (2023)
Lance C W Turtle, Mathew Thorpe, Thomas M Drake, Maaike C Swets, Carlo Palmieri, Clark D Russell, Antonia Ho, Stephen J Aston, Daniel G Wootton, Alex Richter, Thushan I de Silva, Hayley E Hardwick, Gary Leeming, Andy Law, Peter J M Openshaw, Ewen M Harrison, null null, John Kenneth Baillie, Malcolm Gracie Semple, Annemarie B Docherty
Outcome of COVID-19 in hospitalised immunocompromised patients: An analysis of the WHO ISARIC CCP-UK prospective cohort study. PLoS medicine 20 (1) (2023)
Eleanor Barnes, Carl S Goodyear, Michelle Willicombe, Charlotte Gaskell, Stefan Siebert, Thushan I de Silva, Sam M Murray, Daniel Rea, John A Snowden, Miles Carroll, Sarah Pirrie, Sarah J Bowden, Susanna J Dunachie, Alex Richter, Zixiang Lim, Jack Satsangi, Gordon Cook, Ann Pope, Ana Hughes, Molly Harrison, Sean H Lim, Paul Miller, Paul Klenerman, null null, Neil Basu, Ashley Gilmour, Sophie Irwin, Georgina Meacham, Thomas Marjot, Stavros Dimitriadis, Peter Kelleher, Maria F Prendecki, Candice Clarke, Paige Mortimer, Stacey McIntyre, Rachael Selby, Naomi Meardon, Dung Nguyen, Tom Tipton, Stephanie Longet, Stephen Laidlaw, Kim Orchard, Georgina Ireland, null null, David C Thomas, Pamela Kearns, Amanda Kirkham, Iain B McInnes, null null
SARS-CoV-2-specific immune responses and clinical outcomes after COVID-19 vaccination in patients with immune-suppressive disease. Nature medicine (2023)
Isabel Neale, Mohammad Ali, Barbara Kronsteiner, Stéphanie Longet, Priyanka Abraham, Alexandra S Deeks, Anthony Brown, Shona C Moore, Lizzie Stafford, Susan L Dobson, Megan Plowright, Thomas A H Newman, Mary Y Wu, null null, Edward J Carr, Rupert C L Beale, Ashley David Otter, Susan Hopkins, Victoria Hall, Adriana Tomic, Rebecca P Payne, Eleanor Barnes, Alex G Richter, Christopher James Arthur Duncan, Lance C W Turtle, Thushan I de Silva, Miles W Carroll, Teresa Lambe, Paul Klenerman, Susanna J Dunachie, null null
CD4+ and CD8+ T cells and antibodies are associated with protection against Delta vaccine breakthrough infection: a nested case-control study within the PITCH study. mBio (2023)
Saikou Y Bah, Mariama A Kujabi, Saffiatou Darboe, Ngange Kebbeh, Bunja F K Kebbeh, Abdoulie Kanteh, Ramatouille Bojang, Joy E Lawn, Beate Kampmann, Abdul K Sesay, Thushan I de Silva, Helen Brotherton
Acquisition and carriage of genetically diverse multi-drug resistant gram-negative bacilli in hospitalised newborns in The Gambia. Communications medicine 3 (1) (2023)
Varsha Gupta, Sokratis Kariotis, Mohammed D Rajab, Niamh Errington, Elham Alhathli, Emmanuel Jammeh, Martin Brook, Naomi Meardon, Paul J Collini, Joby Cole, Jim M Wild, Steven G Hershman, Ali Javed, Alfred Arthur Roger Thompson, Thushan I de Silva, Euan A Ashley, Dennis Wang, Allan Lawrie
Unsupervised machine learning to investigate trajectory patterns of COVID-19 symptoms and physical activity measured via the MyHeart Counts App and smart devices. NPJ digital medicine 6 (1) (2023)
Lance C W Turtle, Mathew Thorpe, Thomas M Drake, Maaike C Swets, Carlo Palmieri, Clark D Russell, Antonia Ho, Stephen J Aston, Daniel G Wootton, Alex Richter, Thushan I de Silva, Hayley E Hardwick, Gary Leeming, Andy Law, Peter J M Openshaw, Ewen M Harrison, null null, John Kenneth Baillie, Malcolm Gracie Semple, Annemarie B Docherty
Outcome of COVID-19 in hospitalised immunocompromised patients: An analysis of the WHO ISARIC CCP-UK prospective cohort study. PLoS medicine 20 (1) (2023)
Varsha Gupta, Sokratis Kariotis, Mohammed D Rajab, Niamh Errington, Elham Alhathli, Emmanuel Jammeh, Martin Brook, Naomi Meardon, Paul J Collini, Joby Cole, Jim M Wild, Steven G Hershman, Ali Javed, Alfred Arthur Roger Thompson, Thushan I de Silva, Euan A Ashley, Dennis Wang, Allan Lawrie
Unsupervised machine learning to investigate trajectory patterns of COVID-19 symptoms and physical activity measured via the MyHeart Counts App and smart devices. NPJ digital medicine 6 (1) (2023)
Lance C W Turtle, Mathew Thorpe, Thomas M Drake, Maaike C Swets, Carlo Palmieri, Clark D Russell, Antonia Ho, Stephen J Aston, Daniel G Wootton, Alex Richter, Thushan I de Silva, Hayley E Hardwick, Gary Leeming, Andy Law, Peter J M Openshaw, Ewen M Harrison, null null, John Kenneth Baillie, Malcolm Gracie Semple, Annemarie B Docherty
Outcome of COVID-19 in hospitalised immunocompromised patients: An analysis of the WHO ISARIC CCP-UK prospective cohort study. PLoS medicine 20 (1) (2023)
Matthew D Parker, Hazel Stewart, Ola M Shehata, Benjamin B Lindsey, Dhruv R Shah, Sharon Hsu, Alexander J Keeley, David G Partridge, Shay Leary, Alison Cope, Amy State, Katie Johnson, Nasar Ali, Rasha Raghei, Joe Heffer, Nikki Smith, Peijun Zhang, Marta Gallis, Stavroula F Louka, Hailey R Hornsby, Hatoon Alamri, Max Whiteley, Benjamin H Foulkes, Stella Christou, Paige Wolverson, Manoj Pohare, Samantha E Hansford, Luke R Green, Cariad Evans, Mohammad Raza, Dennis Wang, Andrew E Firth, James R Edgar, Silvana Gaudieri, Simon Mallal, null null, Mark O Collins, Andrew A Peden, Thushan I de Silva
Altered subgenomic RNA abundance provides unique insight into SARS-CoV-2 B.1.1.7/Alpha variant infections. Communications biology 5 (1) (2022)
James Blackstone, Oliver Stirrup, Fiona Mapp, Monica Panca, Andrew J Copas, Paul Flowers, Leanne Hockey, James Price, David G Partridge, Christine Peters, Thushan I de Silva, Gaia Nebbia, Luke Blagdon Snell, Rachel McComish, null null, Judith Breuer
Protocol for the COG-UK hospital-onset COVID-19 infection (HOCI) multicentre interventional clinical study: evaluating the efficacy of rapid genome sequencing of SARS-CoV-2 in limiting the spread of COVID-19 in UK NHS hospitals. BMJ open 12 (4) (2022)
Benjamin B Lindsey, Christian Julián Villabona-Arenas, Finlay Campbell, Alexander J Keeley, Matthew D Parker, Dhruv R Shah, Helena Parsons, Peijun Zhang, Nishchay Kakkar, Marta Gallis, Benjamin H Foulkes, Paige Wolverson, Stavroula F Louka, Stella Christou, Amy State, Katie Johnson, Mohammad Raza, Sharon Nienyun Hsu, Thibaut Jombart, Anne Cori, null null, null null, null null, Cariad M Evans, David G Partridge, Katherine E Atkins, Stéphane Hué, Thushan I de Silva
Publisher Correction: Characterising within-hospital SARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves. Nature communications 13 (1) (2022)
Adriana Tomic, Donal T Skelly, Ane Ogbe, Daniel O' Connor, Matthew Pace, Emily Adland, Frances Alexander, Mohammad Ali, Kirk Allott, M Azim Ansari, Sandra Belij-Rammerstorfer, Sagida Bibi, Luke Blackwell, Anthony Brown, Helen Brown, Breeze E Cavell, Elizabeth A Clutterbuck, Thushan I de Silva, David W Eyre, Sheila Lumley, Amy L Flaxman, James Grist, Carl-Philipp Hackstein, Rachel Halkerston, Adam C Harding, Jennifer Hill, Tim James, Cecilia Jay, Síle A Johnson, Barbara Kronsteiner, Yolanda Lie, Aline Linder, Stephanie Longet, Spyridoula Marinou, Philippa Clare Matthews, Jack Mellors, Christos J Petroupoulos, Patpong Rongkard, Cynthia Sedik, Laura Silva-Reyes, Holly Smith, Lisa K Stockdale, Stephen Taylor, Stephen Thomas, Timothy Tipoe, Lance C W Turtle, Vinicius Adriano Vieira, Terri Wrin, null null, null null, null null, Andrew J Pollard, Teresa Lambe, Christopher P Conlon, Katie Jeffery, Simon P L Travis, Philip J R Goulder, John Frater, Alexander J Mentzer, Lizzie Stafford, Miles W Carroll, William S James, Paul Klenerman, Eleanor Barnes, Christina Dold, Susanna J Dunachie
Divergent trajectories of antiviral memory after SARS-CoV-2 infection. Nature communications 13 (1) (2022)
Benjamin B Lindsey, Christian Julián Villabona-Arenas, Finlay Campbell, Alexander J Keeley, Matthew D Parker, Dhruv R Shah, Helena Parsons, Peijun Zhang, Nishchay Kakkar, Marta Gallis, Benjamin H Foulkes, Paige Wolverson, Stavroula F Louka, Stella Christou, Amy State, Katie Johnson, Mohammad Raza, Sharon Nienyun Hsu, Thibaut Jombart, Anne Cori, null null, null null, null null, Cariad M Evans, David G Partridge, Katherine E Atkins, Stéphane Hué, Thushan I de Silva
Characterising within-hospitalSARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves. Nature communications 13 (1) (2022)
David Hodgson, Hayley Colton, Hailey Hornsby, Rebecca Brown, Joanne Mckenzie, Kirsty L Bradley, Cameron James, Benjamin B Lindsey, Sarah Birch, Louise Marsh, Steven Wood, Martin Bayley, Gary Dickson, David C James, Martin J H Nicklin, Jon R Sayers, Domen Zafred, Sarah L Rowland-Jones, Goura Kudesia, Adam Kucharski, null null, Thomas C Darton, Thushan I de Silva, Paul J Collini
Risk factors for SARS-CoV-2 seroprevalence following the first pandemic wave in UK healthcare workers in a large NHS Foundation Trust. medRxiv : the preprint server for health sciences (2021)
Shay Leary, Silvana Gaudieri, Matthew D Parker, Abha Chopra, Ian James, Suman B Pakala, Eric Alves, Mina John, Benjamin B Lindsey, Alexander J Keeley, Sarah L Rowland-Jones, Maurice S Swanson, David A Ostrov, Jodi L Bubenik, Suman R Das, John Sidney, Alessandro Sette, null null, Thushan I de Silva, Elizabeth Phillips, Simon A Mallal
Generation of a novel SARS-CoV-2 sub-genomic RNA due to the R203K/G204R variant in nucleocapsid: homologous recombination has potential to change SARS-CoV-2 at both protein and RNA level. bioRxiv : the preprint server for biology (2021)
Matthew D Parker, Benjamin B Lindsey, Shay Leary, Silvana Gaudieri, Abha Chopra, Matthew Wyles, Adrienn Angyal, Luke R Green, Paul Parsons, Rachel M Tucker, Rebecca Brown, Danielle Groves, Katie Johnson, Laura Carrilero, Joe Heffer, David G Partridge, Cariad Evans, Mohammad Raza, Alexander J Keeley, Nikki Smith, Ana da Silva Filipe, James G Shepherd, Chris Davis, Sahan Bennett, Vattipally B Sreenu, Alain Kohl, Elihu Aranday-Cortes, Lily Tong, Jenna Nichols, Emma C Thomson, null null, Dennis Wang, Simon A Mallal, Thushan I de Silva
Subgenomic RNA identification in SARS-CoV-2 genomic sequencing data. Genome research 31 (4) (2021)
Yanchun Peng, Alexander J Mentzer, Guihai Liu, Xuan Yao, Zixi Yin, Danning Dong, Wanwisa Dejnirattisai, Timothy Rostron, Piyada Supasa, Chang Liu, Cesar Lopez-Camacho, Jose Slon-Campos, Yuguang Zhao, David I Stuart, Guido Paeson, Jonathan Grimes, Fred Antson, Oliver W Bayfield, Dorothy Edp Hawkins, De-Sheng Ker, Lance Turtle, Krishanthi Subramaniam, Paul Thomson, Ping Zhang, Christina Dold, Jeremy Ratcliff, Peter Simmonds, Thushan I de Silva, Paul Sopp, Dannielle Wellington, Ushani Rajapaksa, Yi-Ling Chen, Mariolina Salio, Giorgio Napolitani, Wayne Paes, Persephone Borrow, Benedikt Kessler, Jeremy W Fry, Nikolai F Schwabe, Malcolm G Semple, John Kenneth Baillie, Shona Moore, Peter Jm Openshaw, Azim Ansari, Susanna Dunachie, Ellie Barnes, John Frater, Georgina Kerr, Philip Goulder, Teresa Lockett, Robert Levin, Richard J Cornall, Chris Conlon, Paul Klenerman, Andrew McMichael, Gavin Screaton, Juthathip Mongkolsapaya, Julian C Knight, Graham Ogg, Tao Dong
Broad and strong memory CD4 + and CD8 + T cells induced by SARS-CoV-2 in UK convalescent COVID-19 patients. bioRxiv : the preprint server for biology (2020)