Katherine E Atkins

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 16

Top Topics

Respiratory Syncytial Virus

Antimicrobial Resistance

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Science (New York, N.Y.)

Nature communications

Philosophical transactions of the Royal Society of London. Series B, Biological sciences

This page only lists publications with an associated author ORCID identifier.

Publications

Cinthy Lorena Jiménez-Silva, Ricardo Rivero, Jordan Douglas, Remco Bouckaert, Christian Julián Villabona-Arenas, Katherine E Atkins, Bertha Gastelbondo, Alfonso Calderon, Camilo Guzmán, Daniel Echeverri-De la Hoz, Marina Muñoz, Nathalia Ballesteros, Sergio Castañeda, Luz H Patiño, Angie Ramirez, Nicolas Luna, Alberto Paniz Mondolfi, Hector Serrano-Coll, Juan David Ramirez, Salim Mattar Velilla, Alexei J Drummond
Genomic epidemiology of SARS-CoV-2 variants during the first two years of the pandemic in Colombia. Communications medicine 3 (1) (2023)
Benjamin B Lindsey, Christian Julián Villabona-Arenas, Finlay Campbell, Alexander J Keeley, Matthew D Parker, Dhruv R Shah, Helena Parsons, Peijun Zhang, Nishchay Kakkar, Marta Gallis, Benjamin H Foulkes, Paige Wolverson, Stavroula F Louka, Stella Christou, Amy State, Katie Johnson, Mohammad Raza, Sharon Nienyun Hsu, Thibaut Jombart, Anne Cori, null null, null null, null null, Cariad M Evans, David G Partridge, Katherine E Atkins, Stéphane Hué, Thushan I de Silva
Publisher Correction: Characterising within-hospital SARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves. Nature communications 13 (1) (2022)
Akira Endo 遠藤彰, null null, Mitsuo Uchida, Yang Liu 刘扬, Katherine E Atkins, Adam J Kucharski, Sebastian Funk
Simulating respiratory disease transmission within and between classrooms to assess pandemic management strategies at schools. Proceedings of the National Academy of Sciences of the United States of America 119 (37) (2022)
Emma Pujol-Hodge, Jesus F Salazar-Gonzalez, Deogratius Ssemwanga, Edwin D Charlebois, James Ayieko, Heather E Grant, Teri Liegler, Katherine E Atkins, Pontiano Kaleebu, Moses R Kamya, Maya Petersen, Diane V Havlir, Andrew J Leigh Brown
Detection of HIV-1 Transmission Clusters from Dried Blood Spots within a Universal Test-and-Treat Trial in East Africa. Viruses 14 (8) (2022)
Benjamin B Lindsey, Christian Julián Villabona-Arenas, Finlay Campbell, Alexander J Keeley, Matthew D Parker, Dhruv R Shah, Helena Parsons, Peijun Zhang, Nishchay Kakkar, Marta Gallis, Benjamin H Foulkes, Paige Wolverson, Stavroula F Louka, Stella Christou, Amy State, Katie Johnson, Mohammad Raza, Sharon Nienyun Hsu, Thibaut Jombart, Anne Cori, null null, null null, null null, Cariad M Evans, David G Partridge, Katherine E Atkins, Stéphane Hué, Thushan I de Silva
Characterising within-hospitalSARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves. Nature communications 13 (1) (2022)
Christian Julián Villabona-Arenas, Stéphane Hué, James A C Baxter, Matthew Hall, Katrina A Lythgoe, John Bradley, Katherine E Atkins
Using phylogenetics to infer HIV-1 transmission direction between known transmission pairs. Proceedings of the National Academy of Sciences of the United States of America 119 (38) (2022)
Nicholas G Davies, Stefan Flasche, Mark Jit, Katherine E Atkins
Modeling the effect of vaccination on selection for antibiotic resistance in Streptococcus pneumonia e. Science translational medicine 13 (606) (2021)
Akira Endo 遠藤彰, null null, Quentin J Leclerc, Gwenan Mary Knight, Graham F Medley, Katherine E Atkins, Sebastian Funk, Adam J Kucharski
Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks. Wellcome open research 5 (2021)
Nicholas G Davies, Sam Abbott, Rosanna C Barnard, Christopher I Jarvis, Adam J Kucharski, James D Munday, Carl A B Pearson, Timothy W Russell, Damien C Tully, Alex D Washburne, Tom Wenseleers, Amy Gimma, William Waites, Kerry L M Wong, Kevin van Zandvoort, Justin D Silverman, null null, null null, Karla DiazOrdaz, Ruth H Keogh, Rosalind M M Eggo, Sebastian Funk, Mark Jit, Katherine E Atkins, W John Edmunds
Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England. Science (New York, N.Y.) 372 (6538) (2021)
James D Munday, Richard G Pebody, Katherine E Atkins, Albert Jan Van Hoek
Changing socio-economic and ethnic disparities in influenza/A/H1N1 infection early in the 2009 UK epidemic: a descriptive analysis. BMC infectious diseases 21 (1) (2021)
Akira Endo 遠藤彰, Mitsuo Uchida, Naoki Hayashi, Yang Liu, Katherine E Atkins, Adam J Kucharski, Sebastian Funk
Within and between classroom transmission patterns of seasonal influenza among primary school students in Matsumoto city, Japan. Proceedings of the National Academy of Sciences of the United States of America 118 (46) (2021)
Christian Julián Villabona-Arenas, Matthew D Hall, Katrina A Lythgoe, Stephen G Gaffney, Roland R Regoes, Stéphane Hué, Katherine E Atkins
Number of HIV-1 founder variants is determined by the recency of the source partner infection. Science (New York, N.Y.) 369 (6499) (2020)
Nicholas G Davies, Stefan Flasche, Mark Jit, Katherine E Atkins
Within-host dynamics shape antibiotic resistance in commensal bacteria. Nature ecology & evolution 3 (3) (2019)
David Hodgson, Katherine E Atkins, Marc Baguelin, Jasmina Panovska-Griffiths, Dominic Thorrington, Albert Jan van Hoek, Hongxin Zhao, Ellen B Fragaszy, Andrew C Hayward, Richard Pebody
Estimates for quality of life loss due to Respiratory Syncytial Virus. Influenza and other respiratory viruses 14 (1) (2019)
Cordelia E M Coltart, W John Edmunds, Katherine E Atkins
The 2013-2016 Ebola epidemic: multidisciplinary success conceals a missed opportunity. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 372 (1721) (2018)
Peter Piot, Cordelia E M Coltart, Katherine E Atkins
Preface: 'The 2013-2016 West African Ebola epidemic: data, decision-making and disease control'. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 372 (1721) (2018)