Todd O Yeates

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 29

Top Topics

Machine Learning

Electron Microscopy

Crystal Structure

Top Venues

Protein science : a publication of the Protein Society

ACS synthetic biology

Acta crystallographica. Section D, Structural biology

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Justin E Miller, Matthew P Agdanowski, Joshua L Dolinsky, Michael R Sawaya, Duilio Cascio, Jose A Rodriguez, Todd O Yeates
AlphaFold-assisted structure determination of a bacterial protein of unknown function using X-ray and electron crystallography. Acta crystallographica. Section D, Structural biology 80 (Pt 4) (2024)
Nika Gladkov, Elena A Scott, Kyle Meador, Eric J Lee, Arthur D Laganowsky, Todd O Yeates, Roger Castells-Graells
Design of a symmetry-broken tetrahedral protein cage by a method of internal steric occlusion. Protein science : a publication of the Protein Society 33 (4) (2024)
Justin E Miller, Matthew P Agdanowski, Joshua L Dolinsky, Michael R Sawaya, Duilio Cascio, Jose A Rodriguez, Todd O Yeates
AlphaFold-assisted structure determination of a bacterial protein of unknown function using X-ray and electron crystallography. Acta crystallographica. Section D, Structural biology 80 (Pt 4) (2024)
Nika Gladkov, Elena A Scott, Kyle Meador, Eric J Lee, Arthur D Laganowsky, Todd O Yeates, Roger Castells-Graells
Design of a symmetry-broken tetrahedral protein cage by a method of internal steric occlusion. Protein science : a publication of the Protein Society 33 (4) (2024)
Nika Gladkov, Elena A Scott, Kyle Meador, Eric J Lee, Arthur D Laganowsky, Todd O Yeates, Roger Castells-Graells
Design of a symmetry-broken tetrahedral protein cage by a method of internal steric occlusion. Protein science : a publication of the Protein Society 33 (4) (2024)
Morgan Gee, Kaiser Atai, Hilary A Coller, Todd O Yeates, Roger Castells-Graells
Designed fluorescent protein cages as fiducial markers for targeted cell imaging. bioRxiv : the preprint server for biology (2024)
Justin E Miller, Matthew P Agdanowski, Joshua L Dolinsky, Michael R Sawaya, Duilio Cascio, Jose A Rodriguez, Todd O Yeates
AlphaFold-assisted structure determination of a bacterial protein of unknown function using X-ray and electron crystallography. Acta crystallographica. Section D, Structural biology (2024)
Morgan Gee, Kaiser Atai, Hilary A Coller, Todd O Yeates, Roger Castells-Graells
Designed fluorescent protein cages as fiducial markers for targeted cell imaging. bioRxiv : the preprint server for biology (2024)
Justin E Miller, Matthew P Agdanowski, Joshua L Dolinsky, Michael R Sawaya, Duilio Cascio, Jose A Rodriguez, Todd O Yeates
AlphaFold-assisted structure determination of a bacterial protein of unknown function using X-ray and electron crystallography. Acta crystallographica. Section D, Structural biology 80 (Pt 4) (2024)
Eric J Lee, Nika Gladkov, Justin E Miller, Todd O Yeates
Design of Ligand-Operable Protein-Cages That Open Upon Specific Protein Binding. ACS synthetic biology 13 (1) (2023)
Kyle Meador, Roger Castells-Graells, Roman Aguirre, Michael R Sawaya, Mark A Arbing, Trent Sherman, Chethaka Senarathne, Todd O Yeates
A Suite of Designed Protein Cages Using Machine Learning Algorithms and Protein Fragment-Based Protocols. bioRxiv : the preprint server for biology (2023)
Eric J Lee, Nika Gladkov, Justin E Miller, Todd O Yeates
Design of Ligand-Operable Protein-Cages That Open Upon Specific Protein Binding. ACS synthetic biology (2023)
Justin E Miller, Roger Castells-Graells, Mark A Arbing, Aldo Munoz, Yi-Xiao Jiang, Charlize T Espinoza, Brian Nguyen, Paul Moroz, Todd O Yeates
Design of Beta-2 Microglobulin Adsorbent Protein Nanoparticles. Biomolecules 13 (7) (2023)
Eric J Lee, Nika Gladkov, Justin E Miller, Todd O Yeates
Design of Ligand-Operable Protein-Cages That Open Upon Specific Protein Binding. ACS synthetic biology 13 (1) (2023)
Roger Castells-Graells, Kyle Meador, Mark A Arbing, Michael R Sawaya, Morgan Gee, Duilio Cascio, Emma Gleave, Judit É Debreczeni, Jason Breed, Karoline Leopold, Ankoor Patel, Dushyant Jahagirdar, Bronwyn Lyons, Sriram Subramaniam, Chris Phillips, Todd O Yeates
Cryo-EM structure determination of small therapeutic protein targets at 3 Å-resolution using a rigid imaging scaffold. Proceedings of the National Academy of Sciences of the United States of America 120 (37) (2023)
Eric J Lee, Nika Gladkov, Justin E Miller, Todd O Yeates
Design of Ligand-Operable Protein-Cages That Open Upon Specific Protein Binding. ACS synthetic biology 13 (1) (2023)
Nika Gladkov, Elena A Scott, Kyle Meador, Eric J Lee, Arthur D Laganowsky, Todd O Yeates, Roger Castells-Graells
Design of a symmetry-broken tetrahedral protein cage by a method of internal steric occlusion. bioRxiv : the preprint server for biology (2023)
Maarten A Brems, Robert Runkel, Todd O Yeates, Peter Virnau
AlphaFold predicts the most complex protein knot and composite protein knots. Protein science : a publication of the Protein Society 31 (8) (2022)
Justin E Miller, Yashes Srinivasan, Nithin P Dharmaraj, Andrew Liu, Phillip L Nguyen, Scott D Taylor, Todd O Yeates
Designing Protease-Triggered Protein Cages. Journal of the American Chemical Society 144 (28) (2022)
Jessica M Ochoa, Kaylie Bair, Thomas Holton, Thomas A Bobik, Todd O Yeates
MCPdb: The bacterial microcompartment database. PloS one 16 (3) (2021)
Joshua Laniado, Kevin A Cannon, Justin E Miller, Michael R Sawaya, Dan E McNamara, Todd O Yeates
Geometric Lessons and Design Strategies for Nanoscale Protein Cages. ACS nano 15 (3) (2021)
Vikram Khipple Mulligan, Christine S Kang, Michael R Sawaya, Stephen Rettie, Xinting Li, Inna Antselovich, Timothy W Craven, Andrew M Watkins, Jason W Labonte, Frank DiMaio, Todd O Yeates, David Baker
Computational design of mixed chirality peptide macrocycles with internal symmetry. Protein science : a publication of the Protein Society 29 (12) (2021)
Jessica M Ochoa, Oscar Mijares, Andrea A Acosta, Xavier Escoto, Nancy Leon-Rivera, Joanna D Marshall, Michael R Sawaya, Todd O Yeates
Structural characterization of hexameric shell proteins from two types of choline-utilization bacterial microcompartments. Acta crystallographica. Section F, Structural biology communications 77 (Pt 9) (2021)
Kevin A Cannon, Vy N Nguyen, Christian Morgan, Todd O Yeates
Design and Characterization of an Icosahedral Protein Cage Formed by a Double-Fusion Protein Containing Three Distinct Symmetry Elements. ACS synthetic biology 9 (3) (2020)
Scott A McConnell, Kevin A Cannon, Christian Morgan, Rachel McAllister, Brendan R Amer, Robert T Clubb, Todd O Yeates
Designed Protein Cages as Scaffolds for Building Multienzyme Materials. ACS synthetic biology 9 (2) (2020)
Jessica M Ochoa, Vy N Nguyen, Mengxiao Nie, Michael R Sawaya, Thomas A Bobik, Todd O Yeates
Symmetry breaking and structural polymorphism in a bacterial microcompartment shell protein for choline utilization. Protein science : a publication of the Protein Society 29 (11) (2020)
Joshua Laniado, Todd O Yeates
A complete rule set for designing symmetry combination materials from protein molecules. Proceedings of the National Academy of Sciences of the United States of America 117 (50) (2020)
Kevin A Cannon, Rachel U Park, Scott E Boyken, Una Nattermann, Sue Yi, David Baker, Neil P King, Todd O Yeates
Design and structure of two new protein cages illustrate successes and ongoing challenges in protein engineering. Protein science : a publication of the Protein Society 29 (4) (2019)
Michael C Thompson, Duilio Cascio, Todd O Yeates
Microfocus diffraction from different regions of a protein crystal: structural variations and unit-cell polymorphism. Acta crystallographica. Section D, Structural biology 74 (Pt 5) (2018)