Tsjerk A Wassenaar

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 8

Top Topics

Convolutional Neural Network

Molecular Dynamics Simulations

Protein Protein

Top Venues

Journal of chemical information and modeling

The Journal of cell biology

Proceedings of the National Academy of Sciences of the United States of America

Journal of cheminformatics

This page only lists publications with an associated author ORCID identifier.

Publications

Bart Marlon Herwig Bruininks, Tsjerk A Wassenaar, Ilpo Vattulainen
Unbreaking Assemblies in Molecular Simulations with Periodic Boundaries. Journal of chemical information and modeling (2023)
Bart Marlon Herwig Bruininks, Albert S Thie, Paulo Cesar Telles de Souza, Tsjerk A Wassenaar, Shirin Faraji, Siewert-Jan Marrink
Sequential Voxel-Based Leaflet Segmentation of Complex Lipid Morphologies. Journal of chemical theory and computation (2021)
Martijn R Molenaar, Kamlesh K Yadav, Alexandre Toulmay, Tsjerk A Wassenaar, Muriel C Mari, Lucie Caillon, Aymeric Chorlay, Ivan E Lukmantara, Maya W Haaker, Richard W Wubbolts, Martin Houweling, Arie Bas Vaandrager, Xavier Prieur, Fulvio M Reggiori, Vineet Choudhary, Hongyuan Yang, Roger Schneiter, Abdou Rachid Thiam, William A Prinz, J Bernd Helms
Retinyl esters form lipid droplets independently of triacylglycerol and seipin. The Journal of cell biology 220 (10) (2021)
Lisbeth R Kjølbye, Leonardo De Maria, Tsjerk A Wassenaar, Haleh Abdizadeh, Siewert-Jan Marrink, Jesper Ferkinghoff-Borg, Birgit Schiøtt
General Protocol for Constructing Molecular Models of Nanodiscs. Journal of chemical information and modeling 61 (6) (2021)
Carsten F E Schroer, Lucia Baldauf, Lennard van Buren, Tsjerk A Wassenaar, Manuel N Melo, Gijsje Hendrika Koenderink, Siewert-Jan Marrink
Charge-dependent interactions of monomeric and filamentous actin with lipid bilayers. Proceedings of the National Academy of Sciences of the United States of America 117 (11) (2020)
Ahmet Yildirim, Tsjerk A Wassenaar, David van der Spoel
Statistical efficiency of methods for computing free energy of hydration. The Journal of chemical physics 149 (14) (2018)
Luigi Capoferri, Marc van Dijk, Ariën S Rustenburg, Tsjerk A Wassenaar, Derk P Kooi, Eko Aditya Rifai, Nico P E Vermeulen, Daan P Geerke
eTOX ALLIES: an automated pipeLine for linear interaction energy-based simulations. Journal of cheminformatics 9 (1) (2017)
Kristyna Pluhackova, Stefan Gahbauer, Franziska Kranz, Tsjerk A Wassenaar, Rainer A Böckmann
Dynamic Cholesterol-Conditioned Dimerization of the G Protein Coupled Chemokine Receptor Type 4. PLoS computational biology 12 (11) (2016)