Paulo Cesar Telles de Souza (Paulo C T Souza)

ResearcherID Scopus Author ID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 34

Top Venues

Journal of chemical theory and computation

Journal of chemical information and modeling

Communications biology

Nature communications

Rijksuniversiteit Groningen

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Rijksuniversiteit Groningen

Netherlands

Senior Postdoc :: Groningen Biomolecular Sciences and Biotechnology Institute

Publications

Eleonora Diamanti, Paulo Cesar Telles de Souza, Inda Setyawati, Spyridon Bousis, Leticia Monjas, Lotteke J Y M Swier, Atanaz Shams, Aleksei Tsarenko, Weronika K Stanek, Manuel Jäger, Siewert-Jan Marrink, Dirk Jan Slotboom, Anna Katharina Herta Hirsch
Author Correction: Identification of inhibitors targeting the energy-coupling factor (ECF) transporters. Communications biology 7 (1) (2024)
Eleonora Diamanti, Paulo Cesar Telles de Souza, Inda Setyawati, Spyridon Bousis, Leticia Monjas, Lotteke J Y M Swier, Atanaz Shams, Aleksei Tsarenko, Weronika K Stanek, Manuel Jäger, Siewert-Jan Marrink, Dirk Jan Slotboom, Anna Katharina Herta Hirsch
Author Correction: Identification of inhibitors targeting the energy-coupling factor (ECF) transporters. Communications biology 7 (1) (2024)
Gilberto P Pereira, Riccardo Alessandri, Moisés Domínguez, Rocío Araya-Osorio, Linus Grünewald, Luís Borges-Araújo, Sangwook Wu, Siewert-Jan Marrink, Paulo Cesar Telles de Souza, Raul Mera-Adasme
Bartender: Martini 3 Bonded Terms via Quantum Mechanics-Based Molecular Dynamics. Journal of chemical theory and computation 20 (13) (2024)
Kasper B Pedersen, Luís Borges-Araújo, Amanda Dyrholm Stange, Paulo Cesar Telles de Souza, Siewert-Jan Marrink, Birgit Schiøtt
OLIVES: A Go̅-like Model for Stabilizing Protein Structure via Hydrogen Bonding Native Contacts in the Martini 3 Coarse-Grained Force Field. Journal of chemical theory and computation (2024)
Eleonora Diamanti, Paulo Cesar Telles de Souza, Inda Setyawati, Spyridon Bousis, Leticia Monjas, Lotteke J Y M Swier, Atanaz Shams, Aleksei Tsarenko, Weronika K Stanek, Manuel Jäger, Siewert-Jan Marrink, Dirk Jan Slotboom, Anna Katharina Herta Hirsch
Author Correction: Identification of inhibitors targeting the energy-coupling factor (ECF) transporters. Communications biology 7 (1) (2024)
Gilberto P Pereira, Riccardo Alessandri, Moisés Domínguez, Rocío Araya-Osorio, Linus Grünewald, Luís Borges-Araújo, Sangwook Wu, Siewert-Jan Marrink, Paulo Cesar Telles de Souza, Raul Mera-Adasme
Bartender: Martini 3 Bonded Terms via Quantum Mechanics-Based Molecular Dynamics. Journal of chemical theory and computation (2024)
Cécile Hilpert, Louis Beranger, Paulo Cesar Telles de Souza, Petteri A Vainikka, Vincent Nieto, Siewert-Jan Marrink, Luca Monticelli, Guillaume Launay
Facilitating CG Simulations with MAD: The MArtini Database Server. Journal of chemical information and modeling 63 (3) (2023)
Cécile Hilpert, Louis Beranger, Paulo Cesar Telles de Souza, Petteri A Vainikka, Vincent Nieto, Siewert-Jan Marrink, Luca Monticelli, Guillaume Launay
Facilitating CG Simulations with MAD: The MArtini Database Server. Journal of chemical information and modeling 63 (3) (2023)
Chancievan Thangaratnarajah, Mark Nijland, Luís Borges-Araújo, Aike Jeucken, Jan Rheinberger, Siewert-Jan Marrink, Paulo Cesar Telles de Souza, Cristina Paulino, Dirk Jan Slotboom
Expulsion mechanism of the substrate-translocating subunit in ECF transporters. Nature communications 14 (1) (2023)
Gilberto P Pereira, Brian Jiménez-García, Riccardo Pellarin, Guillaume Launay, Sangwook Wu, Juliette Martin, Paulo Cesar Telles de Souza
Rational Prediction of PROTAC-Compatible Protein-Protein Interfaces by Molecular Docking. Journal of chemical information and modeling (2023)
Eleonora Diamanti, Paulo Cesar Telles de Souza, Inda Setyawati, Spyridon Bousis, Leticia M Gómez, Lotteke J Y M Swier, Atanaz Shams, Aleksei Tsarenko, Weronika K Stanek, Manuel Jäger, Siewert-Jan Marrink, Dirk Jan Slotboom, Anna Katharina Herta Hirsch
Identification of inhibitors targeting the energy-coupling factor (ECF) transporters. Communications biology 6 (1) (2023)
Luís Borges-Araújo, Ilias Patmanidis, Akhil P Singh, Lucianna H S Santos, Adam K Sieradzan, Stefano Vanni, Cezary Czaplewski, Sergio Pantano, Wataru Shinoda, Luca Monticelli, Jozef Adam Liwo, Siewert-Jan Marrink, Paulo Cesar Telles de Souza
Pragmatic Coarse-Graining of Proteins: Models and Applications. Journal of chemical theory and computation (2023)
Panagiotis I Koukos, Sepehr Dehghani-Ghahnaviyeh, Camilo Velez-Vega, John Manchester, D Peter Tieleman, José S Duca, Paulo Cesar Telles de Souza, Zoe Cournia
Martini 3 Force Field Parameters for Protein Lipidation Post-Translational Modifications. Journal of chemical theory and computation (2023)
Luís Borges-Araújo, Ana C Borges-Araújo, Tugba Nur Ozturk, Daniel P Ramirez-Echemendia, Balázs Fábián, Timothy S Carpenter, Sebastian Thallmair, Jonathan Barnoud, Helgi I Ingólfsson, Gerhard Hummer, D Peter Tieleman, Siewert-Jan Marrink, Paulo Cesar Telles de Souza, Manuel N Melo
Martini 3 Coarse-Grained Force Field for Cholesterol. Journal of chemical theory and computation (2023)
Kai Steffen Stroh, Paulo Cesar Telles de Souza, Luca Monticelli, Herre Jelger Risselada
CGCompiler: Automated Coarse-Grained Molecule Parametrization via Noise-Resistant Mixed-Variable Optimization. Journal of chemical theory and computation (2023)
Cécile Hilpert, Louis Beranger, Paulo Cesar Telles de Souza, Petteri A Vainikka, Vincent Nieto, Siewert-Jan Marrink, Luca Monticelli, Guillaume Launay
Facilitating CG Simulations with MAD: The MArtini Database Server. Journal of chemical information and modeling 63 (3) (2023)
Charly Empereur-Mot, Kasper B Pedersen, Riccardo Capelli, Martina Crippa, Cristina Caruso, Mattia Perrone, Paulo Cesar Telles de Souza, Siewert-Jan Marrink, Giovanni M Pavan
Automatic Optimization of Lipid Models in the Martini Force Field Using SwarmCG . Journal of chemical information and modeling (2023)
Cécile Hilpert, Louis Beranger, Paulo Cesar Telles de Souza, Petteri A Vainikka, Vincent Nieto, Siewert-Jan Marrink, Luca Monticelli, Guillaume Launay
Facilitating CG Simulations with MAD: The MArtini Database Server. Journal of chemical information and modeling (2023)
Lisbeth R Kjølbye, Gilberto P Pereira, Alessio Bartocci, Martina Pannuzzo, Simone Albani, Alessandro Marchetto, Brian Jiménez-García, Juliette Martin, Sybille Krauß, Marco Cecchini, Sangwook Wu, Luca Monticelli, Paulo Cesar Telles de Souza
Towards design of drugs and delivery systems with the Martini coarse-grained model. QRB discovery 3 (2022)
Neila Machado, Bart Marlon Herwig Bruininks, Priyanka Singh, Laurita Dos Santos, Carine Dal Pizzol, Gustavo de C Dieamant, Odivania Kruger, Airton Abraão Martins, Siewert-Jan Marrink, Paulo Cesar Telles de Souza, Priscila P Favero
Complex nanoemulsion for vitamin delivery: droplet organization and interaction with skin membranes. Nanoscale 14 (2) (2022)
Ilias Patmanidis, Paulo Cesar Telles de Souza, Selim Sami, Remco W A Havenith, Alex H de Vries, Siewert-Jan Marrink
Modelling structural properties of cyanine dye nanotubes at coarse-grained level. Nanoscale advances 4 (14) (2022)
Fabian Grünewald, Riccardo Alessandri, Peter C Kroon, Luca Monticelli, Paulo Cesar Telles de Souza, Siewert-Jan Marrink
Polyply; a python suite for facilitating simulations of macromolecules and nanomaterials. Nature communications 13 (1) (2022)
Bart Marlon Herwig Bruininks, Albert S Thie, Paulo Cesar Telles de Souza, Tsjerk A Wassenaar, Shirin Faraji, Siewert-Jan Marrink
Sequential Voxel-Based Leaflet Segmentation of Complex Lipid Morphologies. Journal of chemical theory and computation (2021)
Paulo Cesar Telles de Souza, Riccardo Alessandri, Jonathan Barnoud, Sebastian Thallmair, Ignacio Faustino, Fabian Grünewald, Ilias Patmanidis, Haleh Abdizadeh, Bart Marlon Herwig Bruininks, Tsjerk A Wassenaar, Peter C Kroon, Josef Melcr, Vincent Nieto, Valentina Corradi, Hanif M Khan, Jan Domański, Matti Javanainen, Hector Martinez-Seara, Nathalie Reuter, Robert B Best, Ilpo Vattulainen, Luca Monticelli, Xavier Periole, D Peter Tieleman, Alex H de Vries, Siewert J Marrink
Martini 3: a general purpose force field for coarse-grained molecular dynamics. Nature methods 18 (4) (2021)
Maria Tsanai, Pim Wilhelmus Johannes Maria Frederix, Carsten F E Schroer, Paulo Cesar Telles de Souza, Siewert-Jan Marrink
Coacervate formation studied by explicit solvent coarse-grain molecular dynamics with the Martini model. Chemical science 12 (24) (2021)
Shengli Zhang, Gang Huang, Roderick Corstiaan Abraham Versloot, Bart Marlon Herwig Bruininks, Paulo Cesar Telles de Souza, Siewert-Jan Marrink, Giovanni Maglia
Bottom-up fabrication of a proteasome-nanopore that unravels and processes single proteins. Nature chemistry 13 (12) (2021)
Luís Borges-Araújo, Paulo Cesar Telles de Souza, Fábio Fernandes, Manuel N Melo
Improved Parameterization of Phosphatidylinositide Lipid Headgroups for the Martini 3 Coarse-Grain Force Field. Journal of chemical theory and computation 18 (1) (2021)
Anna S Bondarenko, Ilias Patmanidis, Riccardo Alessandri, Paulo Cesar Telles de Souza, Thomas la Cour Jansen, Alex H de Vries, Siewert-Jan Marrink, Jasper Knoester
Multiscale modeling of molecular structure and optical properties of complex supramolecular aggregates. Chemical science 11 (42) (2020)
Hanif M Khan, Paulo Cesar Telles de Souza, Sebastian Thallmair, Jonathan Barnoud, Alex H de Vries, Siewert-Jan Marrink, Nathalie Reuter
Capturing Choline-Aromatics Cation-π Interactions in the MARTINI Force Field. Journal of chemical theory and computation 16 (4) (2020)
Paulo Cesar Telles de Souza, Sebastian Thallmair, Paolo Conflitti, Carlos J Ramírez-Palacios, Riccardo Alessandri, Stefano Raniolo, Vittorio Limongelli, Siewert-Jan Marrink
Protein-ligand binding with the coarse-grained Martini model. Nature communications 11 (1) (2020)
Fabian Grünewald, Paulo Cesar Telles de Souza, Haleh Abdizadeh, Jonathan Barnoud, Alex H de Vries, Siewert-Jan Marrink
Titratable Martini model for constant pH simulations. The Journal of chemical physics 153 (2) (2020)
Paulo Cesar Telles de Souza, Sebastian Thallmair, Siewert-Jan Marrink, Raul Mera-Adasme
An Allosteric Pathway in Copper, Zinc Superoxide Dismutase Unravels the Molecular Mechanism of the G93A Amyotrophic Lateral Sclerosis-Linked Mutation. The journal of physical chemistry letters 10 (24) (2019)
Riccardo Alessandri, Paulo Cesar Telles de Souza, Sebastian Thallmair, Manuel N Melo, Alex H de Vries, Siewert-Jan Marrink
Pitfalls of the Martini Model. Journal of chemical theory and computation 15 (10) (2019)
Paulo Cesar Telles de Souza, Larissa C Textor, Denise C Melo, Alessandro S Nascimento, Munir S Skaf, Igor Polikarpov
An alternative conformation of ERβ bound to estradiol reveals H12 in a stable antagonist position. Scientific reports 7 (1) (2017)

Paulo Cesar Telles de Souza.css-eqlu8i{font-size:small;padding-left:4px;} (Paulo C T Souza)

Publication Activity (10 Years)

Top Topics

Top Venues

Paulo Cesar Telles de Souza (Paulo C T Souza)