Wenli Zhang

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 54

Top Venues

Plant physiology

Viruses

Proceedings of the National Academy of Sciences of the United States of America

International journal of molecular sciences

Nanjing Agricultural University

Institute of Genetics and Developmental Biology Chinese Academy of Sciences (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Nanjing Agricultural University Dec 29 2012

China

Full Professor :: College of Agronomy

Education History

Institute of Genetics and Developmental Biology Chinese Academy of Sciences Sep 01 2002 - Oct 06 2005

China

PHD

Publications

Meiyue Wang, Zijuan Li, Haoyu Wang, Kande Lin, Shu-Song Zheng, Yilong Feng, Wan Teng, Yiping Tong, Wenli Zhang, Chenghong Liu, Hong-Qing Ling, Yue-Qing Hu, Yi-Jing Zhang
A quantitative computational framework for allopolyploid single-cell data integration and core gene ranking in development. Molecular biology and evolution (2024)
Fujie Liu, Sheng Cai, Lingjun Dai, Nijiang Ai, Guoli Feng, Ningshan Wang, Wenli Zhang, Kang Liu, Baoliang Zhou
SR45a plays a key role in enhancing cotton resistance to Verticillium dahliae by alternative splicing of immunity genes. The Plant journal : for cell and molecular biology 119 (1) (2024)
Yilong Feng, Xing Ma, Ying Yang, Shentong Tao, Asgar Ahmed, Zhiyun Gong, Xuejiao Cheng, Wenli Zhang
The roles of DNA methylation on pH dependent i-motif (iM) formation in rice. Nucleic acids research 52 (3) (2024)
Ranran Huang, Yilong Feng, Zhicheng Gao, Asgar Ahmed, Wenli Zhang
The Epigenomic Features and Potential Functions of PEG- and PDS-Favorable DNA G-Quadruplexes in Rice. International journal of molecular sciences 25 (1) (2024)
Fujie Liu, Sheng Cai, Lingjun Dai, Nijiang Ai, Guoli Feng, Ningshan Wang, Wenli Zhang, Kang Liu, Baoliang Zhou
SR45a plays a key role in enhancing cotton resistance to Verticillium dahliae by alternative splicing of immunity genes. The Plant journal : for cell and molecular biology (2024)
Ranran Huang, Yilong Feng, Zhicheng Gao, Asgar Ahmed, Wenli Zhang
The Epigenomic Features and Potential Functions of PEG- and PDS-Favorable DNA G-Quadruplexes in Rice. International journal of molecular sciences 25 (1) (2024)
Haoyang Xin, Yiduo Wang, Wenli Zhang, Bao Yu, Pavel Neumann, Yihang Ning, Alexandre P Marand, Yufeng Wu, Ning Jiang, Jiming Jiang, Mengli Xi
Celine, a long interspersed nuclear element retrotransposon, colonizes in the centromeres of poplar chromosomes. Plant physiology 195 (4) (2024)
Haoyang Xin, Yiduo Wang, Wenli Zhang, Bao Yu, Pavel Neumann, Yihang Ning, Alexandre P Marand, Yufeng Wu, Ning Jiang, Jiming Jiang, Mengli Xi
Celine, a long interspersed nuclear element retrotransposon, colonizes in the centromeres of poplar chromosomes. Plant physiology 195 (4) (2024)
Yilong Feng, Xing Ma, Ying Yang, Shentong Tao, Asgar Ahmed, Zhiyun Gong, Xuejiao Cheng, Wenli Zhang
The roles of DNA methylation on pH dependent i-motif (iM) formation in rice. Nucleic acids research (2024)
Yulian Peng, Pengtao Zhao, Zhaoguo Li, Ning Mu, Shentong Tao, Yilong Feng, Xuejiao Cheng, Wenli Zhang
Genome-wide characterization of single-stranded DNA in rice. Plant physiology (2024)
Yilong Feng, Xing Ma, Ying Yang, Shentong Tao, Asgar Ahmed, Zhiyun Gong, Xuejiao Cheng, Wenli Zhang
The roles of DNA methylation on pH dependent i-motif (iM) formation in rice. Nucleic acids research 52 (3) (2024)
Haoyang Xin, Yiduo Wang, Wenli Zhang, Bao Yu, Pavel Neumann, Yihang Ning, Alexandre P Marand, Yufeng Wu, Ning Jiang, Jiming Jiang, Mengli Xi
Celine, a long interspersed nuclear element retrotransposon, colonizes in the centromeres of poplar chromosomes. Plant physiology (2024)
Fujie Liu, Sheng Cai, Lingjun Dai, Nijiang Ai, Guoli Feng, Ningshan Wang, Wenli Zhang, Kang Liu, Baoliang Zhou
SR45a plays a key role in enhancing cotton resistance to Verticillium dahliae by alternative splicing of immunity genes. The Plant journal : for cell and molecular biology 119 (1) (2024)
Dongyang Zheng, Kande Lin, Xueming Yang, Wenli Zhang, Xuejiao Cheng
Functional Characterization of Accessible Chromatin in Common Wheat. International journal of molecular sciences 25 (17) (2024)
Ranran Huang, Yilong Feng, Zhicheng Gao, Asgar Ahmed, Wenli Zhang
The Epigenomic Features and Potential Functions of PEG- and PDS-Favorable DNA G-Quadruplexes in Rice. International journal of molecular sciences 25 (1) (2024)
Wei Chen, Tao Zhu, Yining Shi, Ying Chen, Wei Jian Li, Ru Jing Chan, Dijun Chen, Wenli Zhang, Yuren Adam Yuan, Xiu-E Wang, Bo Sun
An antisense intragenic lncRNA SEAIRa mediates transcriptional and epigenetic repression of SERRATE in Arabidopsis . Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Wei Chen, Tao Zhu, Yining Shi, Ying Chen, Wei Jian Li, Ru Jing Chan, Dijun Chen, Wenli Zhang, Yuren Adam Yuan, Xiu-E Wang, Bo Sun
An antisense intragenic lncRNA SEAIRa mediates transcriptional and epigenetic repression of SERRATE in Arabidopsis . Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Zijuan Li, Yuyun Zhang, Ci-Hang Ding, Yan Chen, Haoyu Wang, Jinyu Zhang, Songbei Ying, Meiyue Wang, Rongzhi Zhang, Jinyi Liu, Yilin Xie, Tengfei Tang, Huishan Diao, Luhuan Ye, Yili Zhuang, Wan Teng, Bo Zhang, Lin Huang, Yiping Tong, Wenli Zhang, Genying Li, Moussa Benhamed, Zhicheng Dong, Jin-Ying Gou, Yi-Jing Zhang
LHP1-mediated epigenetic buffering of subgenome diversity and defense responses confers genome plasticity and adaptability in allopolyploid wheat. Nature communications 14 (1) (2023)
Yilin Xie, Songbei Ying, Zijuan Li, Yu'e Zhang, Jiafu Zhu, Jinyu Zhang, Meiyue Wang, Huishan Diao, Haoyu Wang, Yuyun Zhang, Luhuan Ye, Yili Zhuang, Fei Zhao, Wan Teng, Wenli Zhang, Yiping Tong, Jungnam Cho, Zhicheng Dong, Yongbiao Xue, Yi-Jing Zhang
Transposable element-initiated enhancer-like elements generate the subgenome-biased spike specificity of polyploid wheat. Nature communications 14 (1) (2023)
Jie Liu, Meng Ke, Yuhan Sun, Shi-Hui Niu, Wenli Zhang, Yun Li
Epigenetic regulation and epigenetic memory resetting during plant rejuvenation. Journal of experimental botany (2023)
Yuyun Zhang, Zijuan Li, Jinyi Liu, Yu'e Zhang, Luhuan Ye, Yuan Peng, Haoyu Wang, Huishan Diao, Yu Ma, Meiyue Wang, Yilin Xie, Tengfei Tang, Yili Zhuang, Wan Teng, Yiping Tong, Wenli Zhang, Zhaobo Lang, Yongbiao Xue, Yi-Jing Zhang
Author Correction: Transposable elements orchestrate subgenome-convergent and -divergent transcription in common wheat. Nature communications 14 (1) (2023)
Mengqi Li, Yilong Feng, Qi Han, Ying Yang, Yining Shi, Dongyang Zheng, Wenli Zhang
Genomic variations combined with epigenetic modifications rewire open chromatin in rice. Plant physiology (2023)
Wei Chen, Tao Zhu, Yining Shi, Ying Chen, Wei Jian Li, Ru Jing Chan, Dijun Chen, Wenli Zhang, Yuren Adam Yuan, Xiu-E Wang, Bo Sun
An antisense intragenic lncRNA SEAIRa mediates transcriptional and epigenetic repression of SERRATE in Arabidopsis . Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Wei Chen, Tao Zhu, Yining Shi, Ying Chen, Wei Jian Li, Ru Jing Chan, Dijun Chen, Wenli Zhang, Yuren Adam Yuan, Xiu-E Wang, Bo Sun
An antisense intragenic lncRNA SEAIRa mediates transcriptional and epigenetic repression of SERRATE in Arabidopsis . Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Wei Chen, Tao Zhu, Yining Shi, Ying Chen, Wei Jian Li, Ru Jing Chan, Dijun Chen, Wenli Zhang, Yuren Adam Yuan, Xiu-E Wang, Bo Sun
An antisense intragenic lncRNA SEAIRa mediates transcriptional and epigenetic repression of SERRATE in Arabidopsis . Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Hao Zhang, Zhiyuan Jin, Fa Cui, Long Zhao, Xiaoyu Zhang, Jinchao Chen, Jing Zhang, Yanyan Li, Yongpeng Li, Yanxiao Niu, Wenli Zhang, Caixia Gao, Xiangdong Fu, Yiping Tong, Lei Wang, Hong-Qing Ling, Junming Li, Jun Xiao
Epigenetic modifications regulate cultivar-specific root development and metabolic adaptation to nitrogen availability in wheat. Nature communications 14 (1) (2023)
Zexue He, Mengqi Li, Xiucai Pan, Yulian Peng, Yining Shi, Qi Han, Manli Shi, Linwei She, Gennadii Borovskii, Xiaojun Chen, Xiaofeng Gu, Xuejiao Cheng, Wenli Zhang
R-loops act as regulatory switches modulating transcription of COLD-responsive genes in rice. The New phytologist (2023)
Wei Chen, Tao Zhu, Yining Shi, Ying Chen, Wei Jian Li, Ru Jing Chan, Dijun Chen, Wenli Zhang, Yuren Adam Yuan, Xiu-E Wang, Bo Sun
An antisense intragenic lncRNA SEAIRa mediates transcriptional and epigenetic repression of SERRATE in Arabidopsis . Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Dongyang Zheng, Mengqi Li, Ying Yang, Ranran Huang, Wenli Zhang
R-loops: emerging key regulators in plants. Journal of experimental botany (2022)
Aicen Zhang, Wenli Zhang
Characterization of Transposon-Derived Accessible Chromatin Regions in Rice ( Oryza Sativa ). International journal of molecular sciences 23 (16) (2022)
Yuyun Zhang, Zijuan Li, Jinyi Liu, Yu'e Zhang, Luhuan Ye, Yuan Peng, Haoyu Wang, Huishan Diao, Yu Ma, Meiyue Wang, Yilin Xie, Tengfei Tang, Yili Zhuang, Wan Teng, Yiping Tong, Wenli Zhang, Zhaobo Lang, Yongbiao Xue, Yi-Jing Zhang
Transposable elements orchestrate subgenome-convergent and -divergent transcription in common wheat. Nature communications 13 (1) (2022)
Johnmark Onyino, Stephen Indieka, Gaoqiong Liu, Manje Gowda, Suresh L M, Wenli Zhang, Xiquan Gao
Fighting Death for Living: Recent Advances in Molecular and Genetic Mechanisms Underlying Maize Lethal Necrosis Disease Resistance. Viruses 14 (12) (2022)
Donghai Mao, Shentong Tao, Xin Li, Dongying Gao, Mingfeng Tang, Chengbing Liu, Dan Wu, Liangli Bai, Zhankun He, Xiaodong Wang, Lei Yang, Yuxing Zhu, Dechun Zhang, Wenli Zhang, Caiyan Chen
The Harbinger transposon-derived gene PANDA epigenetically coordinates panicle number and grain size in rice. Plant biotechnology journal 20 (6) (2022)
Johnmark Onyino, Stephen Indieka, Gaoqiong Liu, Manje Gowda, Suresh L M, Wenli Zhang, Xiquan Gao
Fighting Death for Living: Recent Advances in Molecular and Genetic Mechanisms Underlying Maize Lethal Necrosis Disease Resistance. Viruses 14 (12) (2022)
Xing Ma, Yilong Feng, Ying Yang, Xin Li, Yining Shi, Shentong Tao, Xuejiao Cheng, Jian Huang, Xiu-E Wang, Caiyan Chen, David Monchaud, Wenli Zhang
Genome-wide characterization of i-motifs and their potential roles in the stability and evolution of transposable elements in rice. Nucleic acids research 50 (6) (2022)
Johnmark Onyino, Stephen Indieka, Gaoqiong Liu, Manje Gowda, Suresh L M, Wenli Zhang, Xiquan Gao
Fighting Death for Living: Recent Advances in Molecular and Genetic Mechanisms Underlying Maize Lethal Necrosis Disease Resistance. Viruses 14 (12) (2022)
Johnmark Onyino, Stephen Indieka, Gaoqiong Liu, Manje Gowda, Suresh L M, Wenli Zhang, Xiquan Gao
Fighting Death for Living: Recent Advances in Molecular and Genetic Mechanisms Underlying Maize Lethal Necrosis Disease Resistance. Viruses 14 (12) (2022)
Yuqing Niu, Xiaoguang Huang, Zexue He, Qingqing Zhang, Han Meng, Hua Shi, Baomin Feng, Yuanchang Zhou, Jianfu Zhang, Guo-Dong Lu, Zong-Hua Wang, Wenli Zhang, Dingzhong Tang, Mo Wang
Phosphorylation of OsTGA5 by casein kinase II compromises its suppression of defense-related gene transcription in rice. The Plant cell 34 (9) (2022)
Johnmark Onyino, Stephen Indieka, Gaoqiong Liu, Manje Gowda, Suresh L M, Wenli Zhang, Xiquan Gao
Fighting Death for Living: Recent Advances in Molecular and Genetic Mechanisms Underlying Maize Lethal Necrosis Disease Resistance. Viruses 14 (12) (2022)
Aicen Zhang, Hanli You, Lei Cao, Yining Shi, Jiawei Chen, Yi Shen, Shentong Tao, Zhu-Kuan Cheng, Wenli Zhang
Low cell number ChIP-seq reveals chromatin state-based regulation of gene transcription in the rice male meiocytes. Plant biotechnology journal 20 (12) (2022)
Dongyang Zheng, Wenli Zhang
Characterization of Expression and Epigenetic Features of Core Genes in Common Wheat. Genes 13 (7) (2022)
Johnmark Onyino, Stephen Indieka, Gaoqiong Liu, Manje Gowda, Suresh L M, Wenli Zhang, Xiquan Gao
Fighting Death for Living: Recent Advances in Molecular and Genetic Mechanisms Underlying Maize Lethal Necrosis Disease Resistance. Viruses 14 (12) (2022)
Shentong Tao, Peng Liu, Yining Shi, Yilong Feng, Jingjing Gao, Lifen Chen, Aicen Zhang, Xuejiao Cheng, Hairong Wei, Alexandre P Marand, Wenli Zhang
Single-Cell Transcriptome and Network Analyses Unveil Key Transcription Factors Regulating Mesophyll Cell Development in Maize. Genes 13 (2) (2022)
Yilong Feng, Zhenyu Luo, Ranran Huang, Xueming Yang, Xuejiao Cheng, Wenli Zhang
Epigenomic Features and Potential Functions of K + and Na + Favorable DNA G-Quadruplexes in Rice. International journal of molecular sciences 23 (15) (2022)
Jingjing Gao, Pengyue Zhang, Xinxu Li, Wenqi Wu, Hairong Wei, Wenli Zhang
Toward an understanding of the detection and function of R-loops in plants. Journal of experimental botany 72 (18) (2021)
Qingquan Zhu, Shenghua Gao, Wenli Zhang
Identification of Key Transcription Factors Related to Bacterial Spot Resistance in Pepper through Regulatory Network Analyses. Genes 12 (9) (2021)
Meiyue Wang, Zijuan Li, Yu'e Zhang, Yuyun Zhang, Yilin Xie, Luhuan Ye, Yili Zhuang, Kande Lin, Fei Zhao, Jingyu Guo, Wan Teng, Wenli Zhang, Yiping Tong, Yongbiao Xue, Yi-Jing Zhang
An atlas of wheat epigenetic regulatory elements reveals subgenome divergence in the regulation of development and stress responses. The Plant cell 33 (4) (2021)
Yuyun Zhang, Zijuan Li, Yu'e Zhang, Kande Lin, Yuan Peng, Luhuan Ye, Yili Zhuang, Meiyue Wang, Yilin Xie, Jingyu Guo, Wan Teng, Yiping Tong, Wenli Zhang, Yongbiao Xue, Zhaobo Lang, Yijing Zhang
Evolutionary rewiring of the wheat transcriptional regulatory network by lineage-specific transposable elements. Genome research (2021)
Pengyue Zhang, Jingjing Gao, Xinxu Li, Yilong Feng, Manli Shi, Yining Shi, Wenli Zhang
Interplay of DNA and RNA N 6 -methyladenine with R-loops in regulating gene transcription in Arabidopsis. Physiology and molecular biology of plants : an international journal of functional plant biology 27 (6) (2021)
Wenqi Wu, Jiang Li, Qiao Wang, Kaiwen Lv, Kang Du, Wenli Zhang, Quanzi Li, Xiangyang Kang, Hairong Wei
Growth-regulating factor 5 (GRF5)-mediated gene regulatory network promotes leaf growth and expansion in poplar. The New phytologist 230 (2) (2021)
Yuan Fang, Lifen Chen, Kande Lin, Yilong Feng, Pengyue Zhang, Xiucai Pan, Jennifer Sanders, Yufeng Wu, Xiu-E Wang, Zhen Su, Caiyan Chen, Hairong Wei, Wenli Zhang
Characterization of functional relationships of R-loops with gene transcription and epigenetic modifications in rice. Genome research 29 (8) (2019)
Alexandre P Marand, Hainan Zhao, Wenli Zhang, Zixian Zeng, Chao Fang, Jiming Jiang
Historical Meiotic Crossover Hotspots Fueled Patterns of Evolutionary Divergence in Rice. The Plant cell 31 (3) (2019)
Hainan Zhao, Wenli Zhang, Lifen Chen, Lei Wang, Alexandre P Marand, Yufeng Wu, Jiming Jiang
Proliferation of Regulatory DNA Elements Derived from Transposable Elements in the Maize Genome. Plant physiology 176 (4) (2018)
Xiucai Pan, Yuan Fang, Xueming Yang, Dongyang Zheng, Lifen Chen, Lei Wang, Jin Xiao, Xiu-E Wang, Kai Wang, Zhukuan Cheng, Hengxiu Yu, Wenli Zhang
Chromatin states responsible for the regulation of differentially expressed genes under 60Co~γ ray radiation in rice. BMC genomics 18 (1) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Wenli Zhang