Pavel Neumann

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 23

Top Topics

Dna Methylation

Circulating Tumor

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Plant physiology

This page only lists publications with an associated author ORCID identifier.

Publications

Petr Novák, Nina Hoštáková, Pavel Neumann, Jiří Macas
DANTE and DANTE_LTR: lineage-centric annotation pipelines for long terminal repeat retrotransposons in plant genomes. NAR genomics and bioinformatics 6 (3) (2024)
Haoyang Xin, Yiduo Wang, Wenli Zhang, Bao Yu, Pavel Neumann, Yihang Ning, Alexandre P Marand, Yufeng Wu, Ning Jiang, Jiming Jiang, Mengli Xi
Celine, a long interspersed nuclear element retrotransposon, colonizes in the centromeres of poplar chromosomes. Plant physiology 195 (4) (2024)
Haoyang Xin, Yiduo Wang, Wenli Zhang, Bao Yu, Pavel Neumann, Yihang Ning, Alexandre P Marand, Yufeng Wu, Ning Jiang, Jiming Jiang, Mengli Xi
Celine, a long interspersed nuclear element retrotransposon, colonizes in the centromeres of poplar chromosomes. Plant physiology 195 (4) (2024)
Haoyang Xin, Yiduo Wang, Wenli Zhang, Bao Yu, Pavel Neumann, Yihang Ning, Alexandre P Marand, Yufeng Wu, Ning Jiang, Jiming Jiang, Mengli Xi
Celine, a long interspersed nuclear element retrotransposon, colonizes in the centromeres of poplar chromosomes. Plant physiology (2024)
Murukarthick Jayakodi, Agnieszka A Golicz, Jonathan Kreplak, Lavinia Ioana Fechete, Deepti Angra, Petr Bednář, Elesandro Bornhofen, Hailin Zhang, Raphael Boussageon, Sukhjiwan Kaur, Kwok Cheung, Jana Čížková, Heidrun Gundlach, Asis Hallab, Baptiste Imbert, Gabriel Keeble-Gagnère, Andrea Koblížková, Lucie Kobrlová, Petra Krejčí, Troels W Mouritzen, Pavel Neumann, Marcin Nadzieja, Linda Kærgaard Nielsen, Petr Novák, Jihad Orabi, Sudharsan Padmarasu, Tom Robertson-Shersby-Harvie, Laura Ávila Robledillo, Andrea Schiemann, Jaakko Tanskanen, Petri Törönen, Ahmed O Warsame, Alexander H J Wittenberg, Axel Himmelbach, Grégoire Aubert, Pierre-Emmanuel Courty, Jaroslav Dolezel, Liisa U Holm, Luc L Janss, Hamid Khazaei, Jiří Macas, Martin Mascher, Petr Smýkal, Rod J Snowdon, Nils Stein, Frederick L Stoddard, Jens Stougaard, Nadim Tayeh, Ana M Torres, Björn Usadel, Ingo Schubert, Donal Martin O'Sullivan, Alan H Schulman, Stig Uggerhøj Andersen
The giant diploid faba genome unlocks variation in a global protein crop. Nature (2023)
Jiří Macas, Laura Ávila Robledillo, Jonathan Kreplak, Petr Novák, Andrea Koblížková, Iva Vrbová, Judith Burstin, Pavel Neumann
Assembly of the 81.6 Mb centromere of pea chromosome 6 elucidates the structure and evolution of metapolycentric chromosomes. PLoS genetics 19 (2) (2023)
Murukarthick Jayakodi, Agnieszka A Golicz, Jonathan Kreplak, Lavinia Ioana Fechete, Deepti Angra, Petr Bednář, Elesandro Bornhofen, Hailin Zhang, Raphael Boussageon, Sukhjiwan Kaur, Kwok Cheung, Jana Čížková, Heidrun Gundlach, Asis Hallab, Baptiste Imbert, Gabriel Keeble-Gagnère, Andrea Koblížková, Lucie Kobrlová, Petra Krejčí, Troels W Mouritzen, Pavel Neumann, Marcin Nadzieja, Linda Kærgaard Nielsen, Petr Novák, Jihad Orabi, Sudharsan Padmarasu, Tom Robertson-Shersby-Harvie, Laura Ávila Robledillo, Andrea Schiemann, Jaakko Tanskanen, Petri Törönen, Ahmed O Warsame, Alexander H J Wittenberg, Axel Himmelbach, Grégoire Aubert, Pierre-Emmanuel Courty, Jaroslav Dolezel, Liisa U Holm, Luc L Janss, Hamid Khazaei, Jiří Macas, Martin Mascher, Petr Smýkal, Rod J Snowdon, Nils Stein, Frederick L Stoddard, Jens Stougaard, Nadim Tayeh, Ana M Torres, Björn Usadel, Ingo Schubert, Donal Martin O'Sullivan, Alan H Schulman, Stig Uggerhøj Andersen
The giant diploid faba genome unlocks variation in a global protein crop. Nature 615 (7953) (2023)
Murukarthick Jayakodi, Agnieszka A Golicz, Jonathan Kreplak, Lavinia Ioana Fechete, Deepti Angra, Petr Bednář, Elesandro Bornhofen, Hailin Zhang, Raphael Boussageon, Sukhjiwan Kaur, Kwok Cheung, Jana Čížková, Heidrun Gundlach, Asis Hallab, Baptiste Imbert, Gabriel Keeble-Gagnère, Andrea Koblížková, Lucie Kobrlová, Petra Krejčí, Troels W Mouritzen, Pavel Neumann, Marcin Nadzieja, Linda Kærgaard Nielsen, Petr Novák, Jihad Orabi, Sudharsan Padmarasu, Tom Robertson-Shersby-Harvie, Laura Ávila Robledillo, Andrea Schiemann, Jaakko Tanskanen, Petri Törönen, Ahmed O Warsame, Alexander H J Wittenberg, Axel Himmelbach, Grégoire Aubert, Pierre-Emmanuel Courty, Jaroslav Dolezel, Liisa U Holm, Luc L Janss, Hamid Khazaei, Jiří Macas, Martin Mascher, Petr Smýkal, Rod J Snowdon, Nils Stein, Frederick L Stoddard, Jens Stougaard, Nadim Tayeh, Ana M Torres, Björn Usadel, Ingo Schubert, Donal Martin O'Sullivan, Alan H Schulman, Stig Uggerhøj Andersen
The giant diploid faba genome unlocks variation in a global protein crop. Nature 615 (7953) (2023)
Pavel Neumann, Ludmila Oliveira, Tae-Soo Jang, Petr Novák, Andrea Koblížková, Veit Schubert, Anastassia Boudichevskaia, Jiří Macas
Disruption of the standard kinetochore in holocentric Cuscuta species. Proceedings of the National Academy of Sciences of the United States of America 120 (21) (2023)
Jiří Macas, Laura Ávila Robledillo, Jonathan Kreplak, Petr Novák, Andrea Koblížková, Iva Vrbová, Judith Burstin, Pavel Neumann
Assembly of the 81.6 Mb centromere of pea chromosome 6 elucidates the structure and evolution of metapolycentric chromosomes. PLoS genetics 19 (2) (2023)
Jiří Macas, Laura Ávila Robledillo, Jonathan Kreplak, Petr Novák, Andrea Koblížková, Iva Vrbová, Judith Burstin, Pavel Neumann
Assembly of the 81.6 Mb centromere of pea chromosome 6 elucidates the structure and evolution of metapolycentric chromosomes. PLoS genetics 19 (2) (2023)
Murukarthick Jayakodi, Agnieszka A Golicz, Jonathan Kreplak, Lavinia Ioana Fechete, Deepti Angra, Petr Bednář, Elesandro Bornhofen, Hailin Zhang, Raphael Boussageon, Sukhjiwan Kaur, Kwok Cheung, Jana Čížková, Heidrun Gundlach, Asis Hallab, Baptiste Imbert, Gabriel Keeble-Gagnère, Andrea Koblížková, Lucie Kobrlová, Petra Krejčí, Troels W Mouritzen, Pavel Neumann, Marcin Nadzieja, Linda Kærgaard Nielsen, Petr Novák, Jihad Orabi, Sudharsan Padmarasu, Tom Robertson-Shersby-Harvie, Laura Ávila Robledillo, Andrea Schiemann, Jaakko Tanskanen, Petri Törönen, Ahmed O Warsame, Alexander H J Wittenberg, Axel Himmelbach, Grégoire Aubert, Pierre-Emmanuel Courty, Jaroslav Dolezel, Liisa U Holm, Luc L Janss, Hamid Khazaei, Jiří Macas, Martin Mascher, Petr Smýkal, Rod J Snowdon, Nils Stein, Frederick L Stoddard, Jens Stougaard, Nadim Tayeh, Ana M Torres, Björn Usadel, Ingo Schubert, Donal Martin O'Sullivan, Alan H Schulman, Stig Uggerhøj Andersen
The giant diploid faba genome unlocks variation in a global protein crop. Nature (2023)
Murukarthick Jayakodi, Agnieszka A Golicz, Jonathan Kreplak, Lavinia Ioana Fechete, Deepti Angra, Petr Bednář, Elesandro Bornhofen, Hailin Zhang, Raphael Boussageon, Sukhjiwan Kaur, Kwok Cheung, Jana Čížková, Heidrun Gundlach, Asis Hallab, Baptiste Imbert, Gabriel Keeble-Gagnère, Andrea Koblížková, Lucie Kobrlová, Petra Krejčí, Troels W Mouritzen, Pavel Neumann, Marcin Nadzieja, Linda Kærgaard Nielsen, Petr Novák, Jihad Orabi, Sudharsan Padmarasu, Tom Robertson-Shersby-Harvie, Laura Ávila Robledillo, Andrea Schiemann, Jaakko Tanskanen, Petri Törönen, Ahmed O Warsame, Alexander H J Wittenberg, Axel Himmelbach, Grégoire Aubert, Pierre-Emmanuel Courty, Jaroslav Dolezel, Liisa U Holm, Luc L Janss, Hamid Khazaei, Jiří Macas, Martin Mascher, Petr Smýkal, Rod J Snowdon, Nils Stein, Frederick L Stoddard, Jens Stougaard, Nadim Tayeh, Ana M Torres, Björn Usadel, Ingo Schubert, Donal Martin O'Sullivan, Alan H Schulman, Stig Uggerhøj Andersen
The giant diploid faba genome unlocks variation in a global protein crop. Nature 615 (7953) (2023)
Yi-Tzu Kuo, Amanda Souza Câmara, Veit Schubert, Pavel Neumann, Jiří Macas, Michael Melzer, Jianyong Chen, Joerg Fuchs, Simone Abel, Evelyn Klocke, Bruno Huettel, Axel Himmelbach, Dmitri Demidov, Frank Dunemann, Martin Mascher, Takayoshi Ishii, André Marques, Anastassia Boudichevskaia
Holocentromeres can consist of merely a few megabase-sized satellite arrays. Nature communications 14 (1) (2023)
Pavel Neumann, Ludmila Oliveira, Tae-Soo Jang, Petr Novák, Andrea Koblížková, Veit Schubert, Anastassia Boudichevskaia, Jiří Macas
Disruption of the standard kinetochore in holocentric Cuscuta species. Proceedings of the National Academy of Sciences of the United States of America 120 (21) (2023)
Pavel Neumann, Ludmila Oliveira, Tae-Soo Jang, Petr Novák, Andrea Koblížková, Veit Schubert, Anastassia Boudichevskaia, Jiří Macas
Disruption of the standard kinetochore in holocentric Cuscuta species. Proceedings of the National Academy of Sciences of the United States of America 120 (21) (2023)
Jiří Macas, Laura Ávila Robledillo, Jonathan Kreplak, Petr Novák, Andrea Koblížková, Iva Vrbová, Judith Burstin, Pavel Neumann
Assembly of the 81.6 Mb centromere of pea chromosome 6 elucidates the structure and evolution of metapolycentric chromosomes. PLoS genetics 19 (2) (2023)
Pavel Neumann, Ludmila Oliveira, Jana Čížková, Tae-Soo Jang, Sonja Klemme, Petr Novák, Katarzyna Stelmach, Andrea Koblížková, Jaroslav Dolezel, Jiří Macas
Impact of parasitic lifestyle and different types of centromere organization on chromosome and genome evolution in the plant genus Cuscuta. The New phytologist 229 (4) (2020)
Petr Novák, Maïté S Guignard, Pavel Neumann, Laura J Kelly, Jelena Mlinarec, Andrea Koblížková, Steven Dodsworth, Aleš Kovařík, Jaume Pellicer, Wencai Wang, Jiří Macas, Ilia J Leitch, Andrew R Leitch
Repeat-sequence turnover shifts fundamentally in species with large genomes. Nature plants 6 (11) (2020)
Petr Novák, Pavel Neumann, Jiří Macas
Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2. Nature protocols 15 (11) (2020)
Veit Schubert, Pavel Neumann, André Marques, Stefan Heckmann, Jiri Macas, Andrea Pedrosa Harand, Ingo Schubert, Tae-Soo Jang, Anastassia Boudichevskaia
Super-Resolution Microscopy Reveals Diversity of Plant Centromere Architecture. International journal of molecular sciences 21 (10) (2020)
Jonathan Kreplak, Mohammed-Amin Madoui, Petr Cápal, Petr Novák, Karine Labadie, Grégoire Aubert, Philipp Emanuel Bayer, Krishna K Gali, Robert A Syme, Dorrie Main, Anthony Klein, Aurélie Bérard, Iva Vrbová, Cyril Fournier, Leo d'Agata, Caroline Belser, Wahiba Berrabah, Helena Toegelová, Zbyněk Milec, Jan Vrána, HueyTyng Lee, Ayité Kougbeadjo, Morgane Térézol, Cécile Huneau, Chala J Turo, Nacer Mohellibi, Pavel Neumann, Matthieu Falque, Karine Gallardo, Rebecca McGee, Bunyamin Tar'an, Abdelhafid Bendahmane, Jean-Marc Aury, Jacqueline Batley, Marie-Christine Le Paslier, T H Noel Ellis, Thomas D Warkentin, Clarice J Coyne, Jérome Salse, David Edwards, Judith Lichtenzveig, Jiří Macas, Jaroslav Dolezel, Patrick Wincker, Judith Burstin
A reference genome for pea provides insight into legume genome evolution. Nature genetics 51 (9) (2019)
Pavel Neumann, Petr Novák, Nina Hoštáková, Jiří Macas
Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification. Mobile DNA 10 (2019)