Xiuwei Zhang

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 31

Top Topics

Gene Expression

Top Venues

Nature communications

bioRxiv : the preprint server for biology

Biophysical reviews

Research square

This page only lists publications with an associated author ORCID identifier.

Publications

Ziqi Zhang, Xinye Zhao, Mehak Bindra, Peng Qiu, Xiuwei Zhang
scDisInFact: disentangled learning for integration and prediction of multi-batch multi-condition single-cell RNA-sequencing data. Nature communications 15 (1) (2024)
Ziqi Zhang, Xinye Zhao, Mehak Bindra, Peng Qiu, Xiuwei Zhang
scDisInFact: disentangled learning for integration and prediction of multi-batch multi-condition single-cell RNA-sequencing data. Nature communications 15 (1) (2024)
Ziqi Zhang, Xinye Zhao, Mehak Bindra, Peng Qiu, Xiuwei Zhang
scDisInFact: disentangled learning for integration and prediction of multi-batch multi-condition single-cell RNA-sequencing data. Nature communications 15 (1) (2024)
Ziqi Zhang, Xinye Zhao, Mehak Bindra, Peng Qiu, Xiuwei Zhang
scDisInFact: disentangled learning for integration and prediction of multi-batch multi-condition single-cell RNA-sequencing data. Nature communications 15 (1) (2024)
Ziqi Zhang, Xinye Zhao, Peng Qiu, Xiuwei Zhang
scDisInFact: disentangled learning for integration and prediction of multi-batch multi-condition single-cell RNA-sequencing data. bioRxiv : the preprint server for biology (2023)
Xinhai Pan, Hechen Li, Pranav Putta, Xiuwei Zhang
LinRace: single cell lineage reconstruction using paired lineage barcode and gene expression data. bioRxiv : the preprint server for biology (2023)
Ziqi Zhang, Haoran Sun, Ragunathan Mariappan, Xi Chen, Xinyu Chen, Mika S Jain, Mirjana Efremova, Sarah A Teichmann, Vaibhav Rajan, Xiuwei Zhang
scMoMaT jointly performs single cell mosaic integration and multi-modal bio-marker detection. Nature communications 14 (1) (2023)
Ziqi Zhang, Haoran Sun, Ragunathan Mariappan, Xi Chen, Xinyu Chen, Mika S Jain, Mirjana Efremova, Sarah A Teichmann, Vaibhav Rajan, Xiuwei Zhang
scMoMaT jointly performs single cell mosaic integration and multi-modal bio-marker detection. Nature communications 14 (1) (2023)
Xinhai Pan, Xiuwei Zhang
Studying temporal dynamics of single cells: expression, lineage and regulatory networks. Biophysical reviews 16 (1) (2023)
Xinhai Pan, Hechen Li, Pranav Putta, Xiuwei Zhang
LinRace: single cell lineage reconstruction using paired lineage barcode and gene expression data. bioRxiv : the preprint server for biology (2023)
Xinhai Pan, Hechen Li, Pranav Putta, Xiuwei Zhang
LinRace: cell division history reconstruction of single cells using paired lineage barcode and gene expression data. Nature communications 14 (1) (2023)
Ziqi Zhang, Haoran Sun, Ragunathan Mariappan, Xi Chen, Xinyu Chen, Mika S Jain, Mirjana Efremova, Sarah A Teichmann, Vaibhav Rajan, Xiuwei Zhang
scMoMaT jointly performs single cell mosaic integration and multi-modal bio-marker detection. Nature communications 14 (1) (2023)
Ziqi Zhang, Haoran Sun, Ragunathan Mariappan, Xi Chen, Xinyu Chen, Mika S Jain, Mirjana Efremova, Sarah A Teichmann, Vaibhav Rajan, Xiuwei Zhang
scMoMaT jointly performs single cell mosaic integration and multi-modal bio-marker detection. Nature communications 14 (1) (2023)
Xinhai Pan, Hechen Li, Pranav Putta, Xiuwei Zhang
LinRace: single cell lineage reconstruction using paired lineage barcode and gene expression data. bioRxiv : the preprint server for biology (2023)
Xinhai Pan, Hechen Li, Pranav Putta, Xiuwei Zhang
LinRace: cell division history reconstruction of single cells using paired lineage barcode and gene expression data. Nature communications 14 (1) (2023)
Xinhai Pan, Xiuwei Zhang
Studying temporal dynamics of single cells: expression, lineage and regulatory networks. Biophysical reviews 16 (1) (2023)
Hechen Li, Ziqi Zhang, Michael Squires, Xi Chen, Xiuwei Zhang
scMultiSim: simulation of multi-modality single cell data guided by cell-cell interactions and gene regulatory networks. Research square (2023)
Xinhai Pan, Hechen Li, Pranav Putta, Xiuwei Zhang
LinRace: single cell lineage reconstruction using paired lineage barcode and gene expression data. bioRxiv : the preprint server for biology (2023)
Xinhai Pan, Xiuwei Zhang
Studying temporal dynamics of single cells: expression, lineage and regulatory networks. Biophysical reviews 16 (1) (2023)
Xinhai Pan, Hechen Li, Pranav Putta, Xiuwei Zhang
LinRace: cell division history reconstruction of single cells using paired lineage barcode and gene expression data. Nature communications 14 (1) (2023)
Xinhai Pan, Hechen Li, Pranav Putta, Xiuwei Zhang
LinRace: cell division history reconstruction of single cells using paired lineage barcode and gene expression data. Nature communications 14 (1) (2023)
Ziqi Zhang, Xinye Zhao, Peng Qiu, Xiuwei Zhang
scDisInFact: disentangled learning for integration and prediction of multi-batch multi-condition single-cell RNA-sequencing data. bioRxiv : the preprint server for biology (2023)
Xiuwei Zhang, Xinhai Pan, Hechen Li, Pranav Putta
LinRace: single cell lineage reconstruction using paired lineage barcode and gene expression data. Research square (2023)
Xinhai Pan, Xiuwei Zhang
Studying temporal dynamics of single cells: expression, lineage and regulatory networks. Biophysical reviews 16 (1) (2023)
Xiuwei Zhang, Hechen Li, Ziqi Zhang, Michael Squires, Xi Chen
scMultiSim: simulation of single cell multi-omics and spatial data guided by gene regulatory networks and cell-cell interactions. Research square (2023)
Xinhai Pan, Hechen Li, Pranav Putta, Xiuwei Zhang
LinRace: single cell lineage reconstruction using paired lineage barcode and gene expression data. bioRxiv : the preprint server for biology (2023)
Ziqi Zhang, Chengkai Yang, Xiuwei Zhang
scDART: integrating unmatched scRNA-seq and scATAC-seq data and learning cross-modality relationship simultaneously. Genome biology 23 (1) (2022)
Xinhai Pan, Hechen Li, Xiuwei Zhang
TedSim: temporal dynamics simulation of single-cell RNA sequencing data and cell division history. Nucleic acids research 50 (8) (2022)
Xiuwei Zhang, Chenling A Xu, Nir Yosef
Simulating multiple faceted variability in single cell RNA sequencing. Nature communications 10 (1) (2019)
Ricardo J Miragaia, Xiuwei Zhang, Tomás Gomes, Valentine Svensson, Tomislav Ilicic, Johan Henriksson, Gozde Kar, Tapio Lönnberg
Single-cell RNA-sequencing resolves self-antigen expression during mTEC development. Scientific reports 8 (1) (2018)
Xiuwei Zhang, Nir Yosef
A new way to build cell lineages. eLife 6 (2017)