Peng Qiu (P Qiu)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 33

Top Venues

PLoS computational biology

Communications biology

Nature communications

Journal of computational biology : a journal of computational molecular cell biology

Georgia Institute of Technology

University of Maryland, College Park (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Georgia Institute of Technology

United States

Associate Professor :: Biomedical Engineering

University of Texas MD Anderson Cancer Center

United States

Assistant Professor :: Bioinformatics and Computational Biology

Stanford University

United States

Postdoc :: Radiology

Education History

University of Maryland, College Park

United States

PHD :: Electrical and Computer Engineering

University of Science and Technology of China

China

BSC :: Electronic Science and Technology

Publications

Hong Seo Lim, Peng Qiu
Quantifying the clusterness and trajectoriness of single-cell RNA-seq data. PLoS computational biology 20 (2) (2024)
Xinling Li, Peng Qiu
Gene representation bias in spatial transcriptomics. Journal of bioinformatics and computational biology (2024)
Ziqi Zhang, Xinye Zhao, Mehak Bindra, Peng Qiu, Xiuwei Zhang
scDisInFact: disentangled learning for integration and prediction of multi-batch multi-condition single-cell RNA-sequencing data. Nature communications 15 (1) (2024)
Ziqi Zhang, Xinye Zhao, Mehak Bindra, Peng Qiu, Xiuwei Zhang
scDisInFact: disentangled learning for integration and prediction of multi-batch multi-condition single-cell RNA-sequencing data. Nature communications 15 (1) (2024)
Xinling Li, Peng Qiu
Gene representation bias in spatial transcriptomics. Journal of bioinformatics and computational biology 22 (3) (2024)
Xinling Li, Peng Qiu
Gene representation bias in spatial transcriptomics. Journal of bioinformatics and computational biology 22 (3) (2024)
Hong Seo Lim, Peng Qiu
Quantifying the clusterness and trajectoriness of single-cell RNA-seq data. PLoS computational biology 20 (2) (2024)
Hong Seo Lim, Peng Qiu
Quantifying the clusterness and trajectoriness of single-cell RNA-seq data. PLoS computational biology 20 (2) (2024)
Ziqi Zhang, Xinye Zhao, Mehak Bindra, Peng Qiu, Xiuwei Zhang
scDisInFact: disentangled learning for integration and prediction of multi-batch multi-condition single-cell RNA-sequencing data. Nature communications 15 (1) (2024)
Hong Seo Lim, Peng Qiu
Quantifying the clusterness and trajectoriness of single-cell RNA-seq data. PLoS computational biology 20 (2) (2024)
Ziqi Zhang, Xinye Zhao, Mehak Bindra, Peng Qiu, Xiuwei Zhang
scDisInFact: disentangled learning for integration and prediction of multi-batch multi-condition single-cell RNA-sequencing data. Nature communications 15 (1) (2024)
Hong Seo Lim, Peng Qiu
Quantifying Cell-Type-Specific Differences of Single-Cell Datasets Using Uniform Manifold Approximation and Projection for Dimension Reduction and Shapley Additive exPlanations. Journal of computational biology : a journal of computational molecular cell biology (2023)
Hong Seo Lim, Peng Qiu
Quantifying Cell-Type-Specific Differences of Single-Cell Datasets Using Uniform Manifold Approximation and Projection for Dimension Reduction and Shapley Additive exPlanations. Journal of computational biology : a journal of computational molecular cell biology (2023)
Hong Seo Lim, Peng Qiu
Quantifying Cell-Type-Specific Differences of Single-Cell Datasets Using Uniform Manifold Approximation and Projection for Dimension Reduction and Shapley Additive exPlanations. Journal of computational biology : a journal of computational molecular cell biology (2023)
Lauren A Hymel, Shannon E Anderson, Thomas C Turner, William Y York, Hongmanlin Zhang, Adrian R Liversage, Hong Seo Lim, Peng Qiu, Luke J Mortensen, Young Charles Jang, Nick J Willett, Edward A Botchwey
Identifying dysregulated immune cell subsets following volumetric muscle loss with pseudo-time trajectories. Communications biology 6 (1) (2023)
Yutong Sun, Peng Qiu
Domain adaptation for supervised integration of scRNA-seq data. Communications biology 6 (1) (2023)
Yutong Sun, Peng Qiu
Domain adaptation for supervised integration of scRNA-seq data. Communications biology 6 (1) (2023)
Yutong Sun, Peng Qiu
Domain adaptation for supervised integration of scRNA-seq data. Communications biology 6 (1) (2023)
Yutong Sun, Peng Qiu
Domain adaptation for supervised integration of scRNA-seq data. Communications biology 6 (1) (2023)
Yutong Sun, Peng Qiu
Domain adaptation for supervised integration of scRNA-seq data. Communications biology 6 (1) (2023)
Quoc D Mac, Anirudh Sivakumar, Hathaichanok Phuengkham, Congmin Xu, James R Bowen, Fang-Yi Su, Samuel Z Stentz, Hyoungjun Sim, Adrian M Harris, Tonia T Li, Peng Qiu, Gabriel A Kwong
Urinary detection of early responses to checkpoint blockade and of resistance to it via protease-cleaved antibody-conjugated sensors. Nature biomedical engineering 6 (3) (2022)
Marc A Fernandez-Yague, Lauren A Hymel, Claire E Olingy, Claire A McClain, Molly E Ogle, José R García, Dustin Minshew, Sofiya Vyshnya, Hong Seo Lim, Peng Qiu, Andres J Garcia, Edward A Botchwey
Analyzing immune response to engineered hydrogels by hierarchical clustering of inflammatory cell subsets. Science advances 8 (8) (2022)
Hong Seo Lim, Peng Qiu
JSOM: Jointly-evolving self-organizing maps for alignment of biological datasets and identification of related clusters. PLoS computational biology 17 (3) (2021)
Maria M Coronel, Karen E Martin, Michael D Hunckler, Graham Barber, Eric B O'Neill, Juan D Medina, Enrico Opri, Claire A McClain, Lalit Batra, Jessica D Weaver, Hong Seo Lim, Peng Qiu, Edward A Botchwey, Esma S Yolcu, Haval Shirwan, Andres J Garcia
Immunotherapy via PD-L1-presenting biomaterials leads to long-term islet graft survival. Science advances 6 (35) (2020)
T C Turner, M C P Sok, Lauren A Hymel, F S Pittman, W Y York, Quoc D Mac, Sofiya Vyshnya, Hong Seo Lim, Gabriel A Kwong, Peng Qiu, Edward A Botchwey
Harnessing lipid signaling pathways to target specialized pro-angiogenic neutrophil subsets for regenerative immunotherapy. Science advances 6 (44) (2020)
William Pilcher, Xingyu Yang, Anastasia Zhurikhina, Olga Chernaya, Yinghan Xu, Peng Qiu, Denis Tsygankov
Shape-to-graph mapping method for efficient characterization and classification of complex geometries in biological images. PLoS computational biology 16 (9) (2020)
Peng Qiu
Embracing the dropouts in single-cell RNA-seq analysis. Nature communications 11 (1) (2020)
Congmin Xu, Huaiqiu Zhu, Peng Qiu
Aging progression of human gut microbiota. BMC microbiology 19 (1) (2019)
Qinwei Zhuang, Brandon Alexander Holt, Gabriel A Kwong, Peng Qiu
Deconvolving multiplexed protease signatures with substrate reduction and activity clustering. PLoS computational biology 15 (9) (2019)
John Cg Spainhour, Hong Seo Lim, Soojin V Yi, Peng Qiu
Correlation Patterns Between DNA Methylation and Gene Expression in The Cancer Genome Atlas. Cancer informatics 18 (2019)
Jenny Jeong, Nicholas J Frohberg, Enlu Zhou, Todd Sulchek, Peng Qiu
Accurately tracking single-cell movement trajectories in microfluidic cell sorting devices. PloS one 13 (2) (2018)
Dyana T Saenz, Warren Fiskus, Taghi Manshouri, Christopher P Mill, Yimin Qian, Kanak Raina, Kimal Rajapakshe, Cristian Coarfa, Raffaella Soldi, Prithviraj Bose, Gautam Borthakur, Tapan Mahendra Kadia, Joseph D Khoury, Lucia Masarova, Agnieszka J Nowak, Baohua Sun, David N Saenz, Steven M Kornblau, Steve Horrigan, Sunil Sharma, Peng Qiu, Craig M Crews, Srdan Verstovsek, Kapil N Bhalla
Targeting nuclear β-catenin as therapy for post-myeloproliferative neoplasm secondary AML. Leukemia 33 (6) (2018)
Xingyu Yang, Peng Qiu
Automatically generate two-dimensional gating hierarchy from clustered cytometry data. Cytometry. Part A : the journal of the International Society for Analytical Cytology 93 (10) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Peng Qiu (P Qiu)