Yu Chen

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 23

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Nature communications

Nature protocols

Molecular systems biology

Chalmers University of Technology

East China University of Science and Technology (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Chalmers University of Technology

Sweden

Postdoctoral researcher

Education History

East China University of Science and Technology

China

PHD :: School of Biotechnology

Chalmers tekniska högskola

Sweden

PHD :: Department of Biology and Biological Engineering

Huazhong Agriculture University

China

BSC :: College of Life Sciences & Technology

Publications

Yu Chen, Feiran Li
Metabolomes evolve faster than metabolic network structures. Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Yu Chen, Feiran Li
Metabolomes evolve faster than metabolic network structures. Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Ning Qin, Lingyun Li, Xiaozhen Wan, Xu Ji, Yu Chen, Chaokun Li, Ping Liu, Yijie Zhang, Weijie Yang, Junfeng Jiang, Jian-Ye Xia, Shuobo Shi, Tianwei Tan, Jens B Nielsen, Yun Chen, Zihe Liu
Increased CO 2 fixation enables high carbon-yield production of 3-hydroxypropionic acid in yeast. Nature communications 15 (1) (2024)
Yu Chen, Johan Gustafsson, Albert Tafur Rangel, Petre Mihail Anton, Iván Domenzain, Cheewin Kittikunapong, Feiran Li, Le Yuan, Jens Nielsen, Eduard Johannes Kerkhoven
Reconstruction, simulation and analysis of enzyme-constrained metabolic models using GECKO Toolbox 3.0. Nature protocols (2024)
Yu Chen, Johan Gustafsson, Albert Tafur Rangel, Petre Mihail Anton, Iván Domenzain, Cheewin Kittikunapong, Feiran Li, Le Yuan, Jens Nielsen, Eduard Johannes Kerkhoven
Reconstruction, simulation and analysis of enzyme-constrained metabolic models using GECKO Toolbox 3.0. Nature protocols 19 (3) (2024)
Yu Chen, Feiran Li
Metabolomes evolve faster than metabolic network structures. Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Ning Qin, Lingyun Li, Xiaozhen Wan, Xu Ji, Yu Chen, Chaokun Li, Ping Liu, Yijie Zhang, Weijie Yang, Junfeng Jiang, Jian-Ye Xia, Shuobo Shi, Tianwei Tan, Jens B Nielsen, Yun Chen, Zihe Liu
Increased CO 2 fixation enables high carbon-yield production of 3-hydroxypropionic acid in yeast. Nature communications 15 (1) (2024)
Yu Chen, Feiran Li
Metabolomes evolve faster than metabolic network structures. Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Yu Chen, Johan Gustafsson, Albert Tafur Rangel, Petre Mihail Anton, Iván Domenzain, Cheewin Kittikunapong, Feiran Li, Le Yuan, Jens Nielsen, Eduard Johannes Kerkhoven
Reconstruction, simulation and analysis of enzyme-constrained metabolic models using GECKO Toolbox 3.0. Nature protocols 19 (3) (2024)
Ning Qin, Lingyun Li, Xiaozhen Wan, Xu Ji, Yu Chen, Chaokun Li, Ping Liu, Yijie Zhang, Weijie Yang, Junfeng Jiang, Jian-Ye Xia, Shuobo Shi, Tianwei Tan, Jens B Nielsen, Yun Chen, Zihe Liu
Increased CO 2 fixation enables high carbon-yield production of 3-hydroxypropionic acid in yeast. Nature communications 15 (1) (2024)
Hongzhong Lu, Feiran Li, Le Yuan, Iván Domenzain, Rosemary Yu, Hao Wang, Gang Li, Yu Chen, Boyang Ji, Eduard Johannes Kerkhoven, Jens B Nielsen
Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection. Molecular systems biology 17 (10) (2022)
Yu Chen, Feiran Li, Jens B Nielsen
Genome-scale modeling of yeast metabolism: retrospectives and perspectives. FEMS yeast research 22 (1) (2022)
Yu Chen, Jens B Nielsen
Yeast has evolved to minimize protein resource cost for synthesizing amino acids. Proceedings of the National Academy of Sciences of the United States of America 119 (4) (2022)
Feiran Li, Yu Chen, Qi Qi, Yanyan Wang, Le Yuan, Mingtao Huang, Ibrahim E Elsemman, Amir Feizi, Eduard Johannes Kerkhoven, Jens B Nielsen
Improving recombinant protein production by yeast through genome-scale modeling using proteome constraints. Nature communications 13 (1) (2022)
Ruibing Chen, Jiaoqi Gao, Wei Yu, Xianghui Chen, Xiaoxin Zhai, Yu Chen, Lei Zhang, Yongjin J Zhou
Engineering cofactor supply and recycling to drive phenolic acid biosynthesis in yeast. Nature chemical biology 18 (5) (2022)
Feiran Li, Yu Chen, Mihail Anton, Jens B Nielsen
GotEnzymes: an extensive database of enzyme parameter predictions. Nucleic acids research (2022)
Jian-Ye Xia, Benjamin J Sánchez, Yu Chen, Kate Campbell, Sergo Kasvandik, Jens B Nielsen
Proteome allocations change linearly with the specific growth rate of Saccharomyces cerevisiae under glucose limitation. Nature communications 13 (1) (2022)
Yu Chen, Feiran Li, Jiwei Mao, Yun Chen, Jens B Nielsen
Yeast optimizes metal utilization based on metabolic network and enzyme kinetics. Proceedings of the National Academy of Sciences of the United States of America 118 (12) (2021)
Yu Chen, Jens B Nielsen
In vitro turnover numbers do not reflect in vivo activities of yeast enzymes. Proceedings of the National Academy of Sciences of the United States of America 118 (32) (2021)
Yu Chen, Eunice van Pelt-KleinJan, Berdien van Olst, Sieze Douwenga, Sjef Boeren, Herwig Bachmann, Douwe Molenaar, Jens B Nielsen, Bas Teusink
Proteome constraints reveal targets for improving microbial fitness in nutrient-rich environments. Molecular systems biology 17 (4) (2021)
Jie Zhang, Søren D Petersen, Tijana Radivojević, Andrés Ramirez, Andrés Pérez-Manríquez, Eduardo Abeliuk, Benjamín J Sánchez, Zak Costello, Yu Chen, Michael J Fero, Héctor García Martín, Jens Nielsen, Jay D Keasling, Michael Krogh Jensen
Combining mechanistic and machine learning models for predictive engineering and optimization of tryptophan metabolism. Nature communications 11 (1) (2020)
Yu Chen, Yan Sun, Zhihao Liu, Fengqing Dong, Yuanyuan Li, Yonghong Wang
Genome-scale modeling for Bacillus coagulans to understand the metabolic characteristics. Biotechnology and bioengineering 117 (11) (2020)
Yu Chen, Jens B Nielsen
Energy metabolism controls phenotypes by protein efficiency and allocation. Proceedings of the National Academy of Sciences of the United States of America 116 (35) (2019)

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Publication Activity (10 Years)

Top Topics

Top Venues

Yu Chen