Zhi Xie

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 28

Top Venues

Nucleic acids research

Aging cell

Bioengineering (Basel, Switzerland)

Cell death & disease

Sun Yat-Sen University

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Sun Yat-Sen University Oct 01 2013

China

Professor

National Cancer Institute Sep 01 2010 - Sep 09 2013

United States

Investigator

Publications

Zhikun Wu, Tong Li, Zehang Jiang, Jingjing Zheng, Yizhou Gu, Yizhi Liu, Yun Liu, Zhi Xie
Human pangenome analysis of sequences missing from the reference genome reveals their widespread evolutionary, phenotypic, and functional roles. Nucleic acids research (2024)
Hao Zhou, Yao He, Xiaoxiao Cui, Zhi Xie
AGSAM: Agent-Guided Segment Anything Model for Automatic Segmentation in Few-Shot Scenarios. Bioengineering (Basel, Switzerland) 11 (5) (2024)
Cheng Wu, Tianxiang Tu, Mingzhe Xie, Yiting Wang, Biao Yan, Yajun Gong, Jiayi Zhang, Xiaolai Zhou, Zhi Xie
Spatially resolved transcriptome of the aging mouse brain. Aging cell 23 (5) (2024)
Zhikun Wu, Tong Li, Zehang Jiang, Jingjing Zheng, Yizhou Gu, Yizhi Liu, Yun Liu, Zhi Xie
Human pangenome analysis of sequences missing from the reference genome reveals their widespread evolutionary, phenotypic, and functional roles. Nucleic acids research 52 (5) (2024)
Cheng Wu, Tianxiang Tu, Mingzhe Xie, Yiting Wang, Biao Yan, Yajun Gong, Jiayi Zhang, Xiaolai Zhou, Zhi Xie
Spatially resolved transcriptome of the aging mouse brain. Aging cell (2024)
Cheng Wu, Tianxiang Tu, Mingzhe Xie, Yiting Wang, Biao Yan, Yajun Gong, Jiayi Zhang, Xiaolai Zhou, Zhi Xie
Spatially resolved transcriptome of the aging mouse brain. Aging cell 23 (5) (2024)
Zhikun Wu, Tong Li, Zehang Jiang, Jingjing Zheng, Yizhou Gu, Yizhi Liu, Yun Liu, Zhi Xie
Human pangenome analysis of sequences missing from the reference genome reveals their widespread evolutionary, phenotypic, and functional roles. Nucleic acids research 52 (5) (2024)
Cheng Wu, Tianxiang Tu, Mingzhe Xie, Yiting Wang, Biao Yan, Yajun Gong, Jiayi Zhang, Xiaolai Zhou, Zhi Xie
Spatially resolved transcriptome of the aging mouse brain. Aging cell 23 (5) (2024)
Hao Zhou, Yao He, Xiaoxiao Cui, Zhi Xie
AGSAM: Agent-Guided Segment Anything Model for Automatic Segmentation in Few-Shot Scenarios. Bioengineering (Basel, Switzerland) 11 (5) (2024)
Zhikun Wu, Tong Li, Zehang Jiang, Jingjing Zheng, Yizhou Gu, Yizhi Liu, Yun Liu, Zhi Xie
Human pangenome analysis of sequences missing from the reference genome reveals their widespread evolutionary, phenotypic, and functional roles. Nucleic acids research 52 (5) (2024)
Wenhan Yang, Hao Zhou, Yun Zhang, Limei Sun, Li Huang, Songshan Li, Xiaoling Luo, Yili Jin, Wei Sun, Wenjia Yan, Jing Li, Jianxiang Deng, Zhi Xie, Yao He, Xiaoyan Ding
An Interpretable System for Screening the Severity Level of Retinopathy in Premature Infants Using Deep Learning. Bioengineering (Basel, Switzerland) 11 (8) (2024)
Wenhan Yang, Hao Zhou, Yun Zhang, Limei Sun, Li Huang, Songshan Li, Xiaoling Luo, Yili Jin, Wei Sun, Wenjia Yan, Jing Li, Jianxiang Deng, Zhi Xie, Yao He, Xiaoyan Ding
An Interpretable System for Screening the Severity Level of Retinopathy in Premature Infants Using Deep Learning. Bioengineering (Basel, Switzerland) 11 (8) (2024)
Cheng Wu, Tianxiang Tu, Mingzhe Xie, Yiting Wang, Biao Yan, Yajun Gong, Jiayi Zhang, Xiaolai Zhou, Zhi Xie
Spatially resolved transcriptome of the aging mouse brain. Aging cell 23 (5) (2024)
Xintong Zheng, Mingwei Wang, Shuting Liu, Haiqiao Chen, Yifei Li, Fa Yuan, Ludong Yang, Suo Qiu, Hongwei Wang, Zhi Xie, Mengqing Xiang
A lncRNA-encoded mitochondrial micropeptide exacerbates microglia-mediated neuroinflammation in retinal ischemia/reperfusion injury. Cell death & disease 14 (2) (2023)
Xintong Zheng, Mingwei Wang, Shuting Liu, Haiqiao Chen, Yifei Li, Fa Yuan, Ludong Yang, Suo Qiu, Hongwei Wang, Zhi Xie, Mengqing Xiang
A lncRNA-encoded mitochondrial micropeptide exacerbates microglia-mediated neuroinflammation in retinal ischemia/reperfusion injury. Cell death & disease 14 (2) (2023)
Xintong Zheng, Mingwei Wang, Shuting Liu, Haiqiao Chen, Yifei Li, Fa Yuan, Ludong Yang, Suo Qiu, Hongwei Wang, Zhi Xie, Mengqing Xiang
A lncRNA-encoded mitochondrial micropeptide exacerbates microglia-mediated neuroinflammation in retinal ischemia/reperfusion injury. Cell death & disease 14 (2) (2023)
Jianxia Li, Huabin Hu, Ge Qin, Fan Bai, Xianrui Wu, Haoxian Ke, Jian-Wei Zhang, Yuqian Xie, Zehua Wu, Yang Fu, Hongbo Zheng, Longlong Gong, Zhi Xie, Yan-Hong Deng
Biomarkers of Pathological Complete Response to Neoadjuvant Immunotherapy in Mismatch Repair Deficiency Colorectal Cancer. Clinical cancer research : an official journal of the American Association for Cancer Research (2023)
Yizhao Luan, Zehua Tang, Yao He, Zhi Xie
Intra-Domain Residue Coevolution in Transcription Factors Contributes to DNA Binding Specificity. Microbiology spectrum (2023)
Cheng Wu, Jiaqi Yang, Wei Xiao, Zehang Jiang, Shuxia Chen, Dianlei Guo, Ping Zhang, Chunqiao Liu, Huasheng Yang, Zhi Xie
Single-cell characterization of malignant phenotypes and microenvironment alteration in retinoblastoma. Cell death & disease 13 (5) (2022)
Yizhao Luan, Nan Tang, Jiaqi Yang, Shuting Liu, Chichi Cheng, Yan Wang, Congying Chen, Ya-Nan Guo, Hongwei Wang, Wenxue Zhao, Qian Zhao, Wei Li, Mengqing Xiang, Rong Ju, Zhi Xie
Deficiency of ribosomal proteins reshapes the transcriptional and translational landscape in human cells. Nucleic acids research 50 (12) (2022)
Mingzhe Xie, Ludong Yang, Gennong Chen, Yan Wang, Zhi Xie, Hongwei Wang
RiboChat: a chat-style web interface for analysis and annotation of ribosome profiling data. Briefings in bioinformatics 23 (2) (2022)
Zhikun Wu, Zehang Jiang, Tong Li, Chuanbo Xie, Liansheng Zhao, Jiaqi Yang, Shuai Ouyang, Yizhi Liu, Tao Li, Zhi Xie
Structural variants in the Chinese population and their impact on phenotypes, diseases and population adaptation. Nature communications 12 (1) (2021)
Surui Pei, Tao Liu, Xue Ren, Weizhong Li, Chongjian Chen, Zhi Xie
Benchmarking variant callers in next-generation and third-generation sequencing analysis. Briefings in bioinformatics 22 (3) (2021)
Hongwei Wang, Yan Wang, Jiaqi Yang, Qian Zhao, Nan Tang, Congying Chen, Huihui Li, Chichi Cheng, Mingzhe Xie, Yang Yang, Zhi Xie
Tissue- and stage-specific landscape of the mouse translatome. Nucleic acids research 49 (11) (2021)
Kaining Chen, Congying Chen, Huihui Li, Jiaqi Yang, Mengqing Xiang, Hongwei Wang, Zhi Xie
Widespread translational control regulates retinal development in mouse. Nucleic acids research 49 (17) (2021)
Yao He, Hao Yuan, Cheng Wu, Zhi Xie
DISC: a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning. Genome biology 21 (1) (2020)
Yongquan Lin, Yan Wang, Hui Li, Yuhang Chen, Wentao Qiao, Zhi Xie, Juan Tan, Zhilong Yang
Simultaneous and systematic analysis of cellular and viral gene expression during Enterovirus 71-induced host shutoff. Protein & cell 10 (1) (2019)
Chuan-Le Xiao, Ying Chen, Shang-Qian Xie, Kai-Ning Chen, Yan Wang, Yue Han, Feng Luo, Zhi Xie
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads. Nature methods 14 (11) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Zhi Xie