Chuan-Le Xiao (Chuanle Xiao)

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 22

Top Topics

Single Molecule

Top Venues

Nature communications

Briefings in bioinformatics

International journal of genomics

Scientific reports

This page only lists publications with an associated author ORCID identifier.

Publications

Xin Bai, Hui-Cong Yao, Bo Wu, Luo-Ran Liu, Yu-Ying Ding, Chuan-Le Xiao
DeepBAM: a high-accuracy single-molecule CpG methylation detection tool for Oxford nanopore sequencing. Briefings in bioinformatics 25 (5) (2024)
Fan Nie, Peng Ni, Neng Huang, Jun Zhang, Zhenyu Wang, Chuan-Le Xiao, Feng Luo, Jian-Xin Wang
De novo diploid genome assembly using long noisy reads. Nature communications 15 (1) (2024)
Fan Nie, Peng Ni, Neng Huang, Jun Zhang, Zhenyu Wang, Chuan-Le Xiao, Feng Luo, Jian-Xin Wang
De novo diploid genome assembly using long noisy reads. Nature communications 15 (1) (2024)
Xin Bai, Hui-Cong Yao, Bo Wu, Luo-Ran Liu, Yu-Ying Ding, Chuan-Le Xiao
DeepBAM: a high-accuracy single-molecule CpG methylation detection tool for Oxford nanopore sequencing. Briefings in bioinformatics 25 (5) (2024)
Fan Nie, Peng Ni, Neng Huang, Jun Zhang, Zhenyu Wang, Chuan-Le Xiao, Feng Luo, Jian-Xin Wang
De novo diploid genome assembly using long noisy reads. Nature communications 15 (1) (2024)
Zhuo-Xing Shi, Zhi-Chao Chen, Jia-Yong Zhong, Kun-Hua Hu, Ying-Feng Zheng, Ying Chen, Shang-Qian Xie, Xiao-Chen Bo, Feng Luo, Chong Tang, Chuan-Le Xiao, Yi-Zhi Liu
High-throughput and high-accuracy single-cell RNA isoform analysis using PacBio circular consensus sequencing. Nature communications 14 (1) (2023)
Zhuo-Xing Shi, Zhi-Chao Chen, Jia-Yong Zhong, Kun-Hua Hu, Ying-Feng Zheng, Ying Chen, Shang-Qian Xie, Xiao-Chen Bo, Feng Luo, Chong Tang, Chuan-Le Xiao, Yi-Zhi Liu
High-throughput and high-accuracy single-cell RNA isoform analysis using PacBio circular consensus sequencing. Nature communications 14 (1) (2023)
Zhuo-Xing Shi, Zhi-Chao Chen, Jia-Yong Zhong, Kun-Hua Hu, Ying-Feng Zheng, Ying Chen, Shang-Qian Xie, Xiao-Chen Bo, Feng Luo, Chong Tang, Chuan-Le Xiao, Yi-Zhi Liu
High-throughput and high-accuracy single-cell RNA isoform analysis using PacBio circular consensus sequencing. Nature communications 14 (1) (2023)
Jia-Yong Zhong, Longjian Niu, Zhuo-Bin Lin, Xin Bai, Ying Chen, Feng Luo, Chunhui Hou, Chuan-Le Xiao
High-throughput Pore-C reveals the single-allele topology and cell type-specificity of 3D genome folding. Nature communications 14 (1) (2023)
Jia-Yong Zhong, Longjian Niu, Zhuo-Bin Lin, Xin Bai, Ying Chen, Feng Luo, Chunhui Hou, Chuan-Le Xiao
High-throughput Pore-C reveals the single-allele topology and cell type-specificity of 3D genome folding. Nature communications 14 (1) (2023)
Jia-Yong Zhong, Longjian Niu, Zhuo-Bin Lin, Xin Bai, Ying Chen, Feng Luo, Chunhui Hou, Chuan-Le Xiao
High-throughput Pore-C reveals the single-allele topology and cell type-specificity of 3D genome folding. Nature communications 14 (1) (2023)
Peng Ni, Fan Nie, Zeyu Zhong, Jinrui Xu, Neng Huang, Jun Zhang, Haochen Zhao, You Zou, Yuanfeng Huang, Jin-Chen Li, Chuan-Le Xiao, Feng Luo, Jian-Xin Wang
DNA 5-methylcytosine detection and methylation phasing using PacBio circular consensus sequencing. Nature communications 14 (1) (2023)
Zhuo-Xing Shi, Zhi-Chao Chen, Jia-Yong Zhong, Kun-Hua Hu, Ying-Feng Zheng, Ying Chen, Shang-Qian Xie, Xiao-Chen Bo, Feng Luo, Chong Tang, Chuan-Le Xiao, Yi-Zhi Liu
High-throughput and high-accuracy single-cell RNA isoform analysis using PacBio circular consensus sequencing. Nature communications 14 (1) (2023)
Erich D Jarvis, Giulio Formenti, Arang Rhie, Andrea Guarracino, Chentao Yang, Jonathan M D Wood, Alan Tracey, Françoise Thibaud-Nissen, Mitchell R Vollger, David Porubsky, Haoyu Cheng, Mobin Asri, Glennis A Logsdon, Paolo Carnevali, Mark J P Chaisson, Chen-Shan Chin, Sarah Cody, Joanna Collins, Peter Ebert, Merly Escalona, Olivier Fedrigo, Robert S Fulton, Lucinda L Fulton, Shilpa Garg, Jennifer L Gerton, Jay Ghurye, Anastasiya Granat, Richard E Green, William Harvey, Patrick Hasenfeld, Alex Hastie, Marina Haukness, Erich B Jaeger, Miten Jain, Melanie Kirsche, Mikhail Kolmogorov, Jan O Korbel, Sergey Koren, Jonas Korlach, Joyce Lee, Daofeng Li, Tina Lindsay, Julian Lucas, Feng Luo, Tobias Marschall, Matthew W Mitchell, Jennifer McDaniel, Fan Nie, Hugh E Olsen, Nathan D Olson, Trevor Pesout, Tamara Potapova, Daniela Puiu, Allison Regier, Jue Ruan, Steven L Salzberg, Ashley D Sanders, Michael C Schatz, Anthony Schmitt, Valerie A Schneider, Siddarth Selvaraj, Kishwar Shafin, Alaina Shumate, Nathan O Stitziel, Catherine Stober, James Torrance, Justin Wagner, Jian-Xin Wang, Aaron Wenger, Chuan-Le Xiao, Aleksey V Zimin, Guo-Jie Zhang, Ting Wang, Heng Li, Erik Garrison, David Haussler, Ira Hall, Justin M Zook, Evan E Eichler, Adam M Phillippy, Benedict Paten, Kerstin Howe, Karen H Miga, null null
Semi-automated assembly of high-quality diploid human reference genomes. Nature 611 (7936) (2022)
Qiqi Cao, Shipo Wu, Chuan-Le Xiao, Shuzhen Chen, Xiangyang Chi, Xiuliang Cui, Hao Tang, Wenru Su, Yingfeng Zheng, Jiayong Zhong, Zhaomin Li, Fang Li, Haijia Chen, Lihua Hou, Hong-Yang Wang, Wen Wen
Integrated single-cell analysis revealed immune dynamics during Ad5-nCoV immunization. Cell discovery 7 (1) (2021)
Ying Chen, Fan Nie, Shang-Qian Xie, Ying-Feng Zheng, Qi Dai, Thomas Bray, Yao-Xin Wang, Jian-Feng Xing, Zhi-Jian Huang, De-Peng Wang, Li-Juan He, Feng Luo, Jian-Xin Wang, Yi-Zhi Liu, Chuan-Le Xiao
Efficient assembly of nanopore reads via highly accurate and intact error correction. Nature communications 12 (1) (2021)
Peng Ni, Neng Huang, Fan Nie, Jun Zhang, Zhi Zhang, Bo Wu, Lu Bai, Wende Liu, Chuan-Le Xiao, Feng Luo, Jian-Xin Wang
Genome-wide detection of cytosine methylations in plant from Nanopore data using deep learning. Nature communications 12 (1) (2021)
Qian Liu, Li Fang, Guoliang Yu, Depeng Wang, Chuan-Le Xiao, Kai Wang
Detection of DNA base modifications by deep recurrent neural network on Oxford Nanopore sequencing data. Nature communications 10 (1) (2019)
Zhao-Yu Liu, Jian-Feng Xing, Wei Chen, Mei-Wei Luan, Rui Xie, Jing Huang, Shang-Qian Xie, Chuan-Le Xiao
MDR: an integrative DNA N6-methyladenine and N4-methylcytosine modification database for Rosaceae. Horticulture research 6 (2019)
Shang-Qian Xie, Yue Han, Xiao-Zhou Chen, Tai-Yu Cao, Kai-Kai Ji, Jie Zhu, Peng Ling, Chuan-Le Xiao
ISOdb: A Comprehensive Database of Full-Length Isoforms Generated by Iso-Seq. International journal of genomics 2018 (2018)
Chuan-Le Xiao, Shang-Qian Xie, Qing-Biao Xie, Zhao-Yu Liu, Jian-Feng Xing, Kai-Kai Ji, Jun Tao, Liang-Ying Dai, Feng Luo
N6-Methyladenine DNA modification in Xanthomonas oryzae pv. oryzicola genome. Scientific reports 8 (1) (2018)
Chuan-Le Xiao, Ying Chen, Shang-Qian Xie, Kai-Ning Chen, Yan Wang, Yue Han, Feng Luo, Zhi Xie
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads. Nature methods 14 (11) (2017)