Methylome-based cell-of-origin modeling (Methyl-COOM) identifies aberrant expression of immune regulatory molecules in CLL.
Justyna A WierzbinskaReka TothNaveed IshaqueKarsten RippeJan-Philipp MallmLara C KlettDaniel MertensThorsten ZenzThomas HielscherMarc SeifertRalf KüppersYassen AssenovPavlo LutsikStephan StilgenbauerPhilipp M RoessnerMartina SeiffertJohn ByrdChristopher C OakesChristoph PlassDaniel B LipkaPublished in: Genome medicine (2020)
Methyl-COOM analysis of CLL identified disease-specific aberrant gene regulation. The aberrantly expressed genes identified in this study might play a role in immune-evasion in CLL and might serve as novel targets for immunotherapy approaches. In summary, we propose a novel framework for in silico modeling of reference DNA methylomes and for the identification of cancer-specific epigenetic changes, a concept that can be broadly applied to other human malignancies.
Keyphrases
- chronic lymphocytic leukemia
- genome wide
- endothelial cells
- dna methylation
- poor prognosis
- papillary thyroid
- bioinformatics analysis
- single cell
- gene expression
- circulating tumor
- cell therapy
- molecular docking
- induced pluripotent stem cells
- squamous cell
- stem cells
- mesenchymal stem cells
- pluripotent stem cells
- long non coding rna
- young adults