Daniel B Lipka (Daniel Lipka, D Lipka)

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 30

Top Topics

Acute Myeloid Leukemia

Dna Methylation

Listeria Monocytogenes

Top Venues

Nature communications

Science immunology

This page only lists publications with an associated author ORCID identifier.

Publications

Julia Schöpf, Sebastian Uhrig, Christoph E Heilig, Kwang-Seok Lee, Tatjana Walther, Alexander Carazzato, Anna Maria Dobberkau, Dieter Weichenhan, Christoph Plass, Mark Hartmann, Gaurav D Diwan, Zunamys Itzell Carrero, Claudia R Ball, Tobias Hohl, Thomas Kindler, Patricia Rudolph-Hähnel, Dominic Helm, Martin Schneider, Anna Nilsson, Ingrid Öra, Roland Imle, Ana Banito, Robert B Russell, Barbara C Jones, Daniel B Lipka, Hanno Glimm, Daniel Hübschmann, Wolfgang Hartmann, Stefan Fröhling, Claudia Scholl
Multi-omic and functional analysis for classification and treatment of sarcomas with FUS-TFCP2 or EWSR1-TFCP2 fusions. Nature communications 15 (1) (2024)
Dieter Weichenhan, Anna Riedel, Etienne Sollier, Umut H Toprak, Joschka Hey, Kersten Henrik Breuer, Justyna Anna Wierzbinska, Aurore Touzart, Pavlo Lutsik, Marion Bähr, Anders Östlund, Tina Nilsson, Susanna Jacobsson, Ahmed Waraky, Yvonne Lisa Behrens, Gudrun Göhring, Brigitte Schlegelberger, Clemens Steinek, Hartmann Harz, Heinrich Leonhardt, Anna Dolnik, Dirk Reinhardt, Lars Bullinger, Lars Palmqvist, Daniel B Lipka, Christoph Plass
Altered enhancer-promoter interaction leads to MNX1 expression in pediatric acute myeloid leukemia with t(7;12)(q36;p13). Blood advances (2024)
Julia Schöpf, Sebastian Uhrig, Christoph E Heilig, Kwang-Seok Lee, Tatjana Walther, Alexander Carazzato, Anna Maria Dobberkau, Dieter Weichenhan, Christoph Plass, Mark Hartmann, Gaurav D Diwan, Zunamys Itzell Carrero, Claudia R Ball, Tobias Hohl, Thomas Kindler, Patricia Rudolph-Hähnel, Dominic Helm, Martin Schneider, Anna Nilsson, Ingrid Öra, Roland Imle, Ana Banito, Robert B Russell, Barbara C Jones, Daniel B Lipka, Hanno Glimm, Daniel Hübschmann, Wolfgang Hartmann, Stefan Fröhling, Claudia Scholl
Multi-omic and functional analysis for classification and treatment of sarcomas with FUS-TFCP2 or EWSR1-TFCP2 fusions. Nature communications 15 (1) (2024)
Julia Schöpf, Sebastian Uhrig, Christoph E Heilig, Kwang-Seok Lee, Tatjana Walther, Alexander Carazzato, Anna Maria Dobberkau, Dieter Weichenhan, Christoph Plass, Mark Hartmann, Gaurav D Diwan, Zunamys Itzell Carrero, Claudia R Ball, Tobias Hohl, Thomas Kindler, Patricia Rudolph-Hähnel, Dominic Helm, Martin Schneider, Anna Nilsson, Ingrid Öra, Roland Imle, Ana Banito, Robert B Russell, Barbara C Jones, Daniel B Lipka, Hanno Glimm, Daniel Hübschmann, Wolfgang Hartmann, Stefan Fröhling, Claudia Scholl
Multi-omic and functional analysis for classification and treatment of sarcomas with FUS-TFCP2 or EWSR1-TFCP2 fusions. Nature communications 15 (1) (2024)
Julia Schöpf, Sebastian Uhrig, Christoph E Heilig, Kwang-Seok Lee, Tatjana Walther, Alexander Carazzato, Anna Maria Dobberkau, Dieter Weichenhan, Christoph Plass, Mark Hartmann, Gaurav D Diwan, Zunamys Itzell Carrero, Claudia R Ball, Tobias Hohl, Thomas Kindler, Patricia Rudolph-Hähnel, Dominic Helm, Martin Schneider, Anna Nilsson, Ingrid Öra, Roland Imle, Ana Banito, Robert B Russell, Barbara C Jones, Daniel B Lipka, Hanno Glimm, Daniel Hübschmann, Wolfgang Hartmann, Stefan Fröhling, Claudia Scholl
Multi-omic and functional analysis for classification and treatment of sarcomas with FUS-TFCP2 or EWSR1-TFCP2 fusions. Nature communications 15 (1) (2024)
Andreas Mock, Maria-Veronica Teleanu, Simon Kreutzfeldt, Christoph E Heilig, Jennifer Hüllein, Lino Möhrmann, Arne Jahn, Dorothea Hanf, Irina A Kerle, Hans Martin Singh, Barbara Hutter, Sebastian Uhrig, Martina Fröhlich, Olaf Neumann, Andreas Hartig, Sascha Brückmann, Steffen Hirsch, Kerstin Grund, Nicola Dikow, Daniel B Lipka, Marcus Renner, Irfan Ahmed Bhatti, Leonidas Apostolidis, Richard F Schlenk, Christian P Schaaf, Albrecht Stenzinger, Evelin Schröck, Daniel Hübschmann, Christoph Heining, Peter Horak, Hanno Glimm, Stefan Fröhling
NCT/DKFZ MASTER handbook of interpreting whole-genome, transcriptome, and methylome data for precision oncology. NPJ precision oncology 7 (1) (2023)
N Zioni, A Akhiad Bercovich, N Chapal-Ilani, Tal Bacharach, N Rappoport, A Solomon, R Avraham, E Kopitman, Ziv Porat, M Sacma, G Hartmut, Marina Scheller, Carsten Muller-Tidow, Daniel B Lipka, E Shlush, M Minden, N Kaushansky, Liran I Shlush
Inflammatory signals from fatty bone marrow support DNMT3A driven clonal hematopoiesis. Nature communications 14 (1) (2023)
Mehdi Manoochehri, Nasim Borhani, Clarissa Gerhäuser, Yassen Assenov, Maximilian Schönung, Thomas Hielscher, Brock C Christensen, Min Kyung Lee, Hermann-Josef Gröne, Daniel B Lipka, Thomas Brüning, Hiltrud B Brauch, Yon-Dschun Ko, Ute Hamann
DNA methylation biomarkers for noninvasive detection of triple-negative breast cancer using liquid biopsy. International journal of cancer (2022)
Ruth Meier, Gabriele Greve, Dennis Zimmer, Helena Bresser, Bettina Berberich, Ralitsa Langova, Julia Stomper, Anne Rubarth, Lars Feuerbach, Daniel B Lipka, Joschka Hey, Björn Grüning, Benedikt Brors, Justus Duyster, Christoph Plass, Heiko Becker, Michael Lübbert
The antileukemic activity of decitabine upon PML/RARA-negative AML blasts is supported by all-trans retinoic acid: in vitro and in vivo evidence for cooperation. Blood cancer journal 12 (8) (2022)
Lino Möhrmann, Maximilian Werner, Małgorzata Oleś, Andreas Mock, Sebastian Uhrig, Arne Jahn, Simon Kreutzfeldt, Martina Fröhlich, Barbara Hutter, Nagarajan Paramasivam, Daniela Richter, Katja Beck, Ulrike Winter, Katrin Pfütze, Christoph E Heilig, Veronica Teleanu, Daniel B Lipka, Marc Zapatka, Dorothea Hanf, Catrin List, Michael Allgäuer, Roland Penzel, Gina Rüter, Ivan Jelas, Rainer Hamacher, Johanna Falkenhorst, Sebastian Wagner, Christian H Brandts, Melanie Börries, Anna L Illert, Klaus H Metzeler, C Benedikt Westphalen, Alexander Desuki, Thomas Kindler, Gunnar Folprecht, Wilko Weichert, Benedikt Brors, Albrecht Stenzinger, Evelin Schröck, Daniel Hübschmann, Peter Horak, Christoph Heining, Stefan Fröhling, Hanno Glimm
Comprehensive genomic and epigenomic analysis in cancer of unknown primary guides molecularly-informed therapies despite heterogeneity. Nature communications 13 (1) (2022)
Nikolaus Dietlein, Xi Wang, Jonas Metz, Olivier Disson, Fuwei Shang, Celine Beyersdörffer, Esther Rodríguez Correa, Daniel B Lipka, Yvonne Begus-Nahrmann, Robyn Laura Kosinsky, Steven A Johnsen, Marc Lecuit, Thomas Höfer, Hans-Reimer Rodewald
Usp22 is an intracellular regulator of systemic emergency hematopoiesis. Science immunology 7 (78) (2022)
Nikolaus Dietlein, Xi Wang, Jonas Metz, Olivier Disson, Fuwei Shang, Celine Beyersdörffer, Esther Rodríguez Correa, Daniel B Lipka, Yvonne Begus-Nahrmann, Robyn Laura Kosinsky, Steven A Johnsen, Marc Lecuit, Thomas Höfer, Hans-Reimer Rodewald
Usp22 is an intracellular regulator of systemic emergency hematopoiesis. Science immunology 7 (78) (2022)
Nikolaus Dietlein, Xi Wang, Jonas Metz, Olivier Disson, Fuwei Shang, Celine Beyersdörffer, Esther Rodríguez Correa, Daniel B Lipka, Yvonne Begus-Nahrmann, Robyn Laura Kosinsky, Steven A Johnsen, Marc Lecuit, Thomas Höfer, Hans-Reimer Rodewald
Usp22 is an intracellular regulator of systemic emergency hematopoiesis. Science immunology 7 (78) (2022)
Nikolaus Dietlein, Xi Wang, Jonas Metz, Olivier Disson, Fuwei Shang, Celine Beyersdörffer, Esther Rodríguez Correa, Daniel B Lipka, Yvonne Begus-Nahrmann, Robyn Laura Kosinsky, Steven A Johnsen, Marc Lecuit, Thomas Höfer, Hans-Reimer Rodewald
Usp22 is an intracellular regulator of systemic emergency hematopoiesis. Science immunology 7 (78) (2022)
Marina Scheller, Anne Kathrin Ludwig, Stefanie Göllner, Christian Rohde, Stephen Krämer, Sina Stäble, Maike Janssen, James-Arne Müller, Lixiazi He, Nicole Bäumer, Christian Arnold, Joachim Gerß, Maximilian Schönung, Christian Thiede, Christian Niederwieser, Dietger Niederwieser, Hubert Serve, Wolfgang E Berdel, Ulrich Thiem, Inga Hemmerling, Florian Leuschner, Christoph Plass, Matthias Schlesner, Judith Barbara Zaugg, Michael D Milsom, Flavia Carla Meotti, Caroline Pabst, Daniel B Lipka, Carsten Muller-Tidow
Hotspot DNMT3A mutations in clonal hematopoiesis and acute myeloid leukemia sensitize cells to azacytidine via viral mimicry response. Nature cancer 2 (5) (2021)
Costanza Zanetti, Rahul Kumar, Joscha Ender, Parimala S Godavarthy, Mark Hartmann, Joschka Hey, Kersten Henrik Breuer, Eva S Weissenberger, Valentina R Minciacchi, Christina Karantanou, Zhaohui Gu, Kathryn G Roberts, Markus Metzler, Wendy Stock, Charles G Mullighan, Clara D Bloomfield, Natalie Filmann, Katrin Bankov, Sylvia Hartmann, Robert P Hasserjian, Antony F Cousins, Christina Halsey, Christoph Plass, Daniel B Lipka, Daniela S Krause
The age of the bone marrow microenvironment influences B-cell acute lymphoblastic leukemia progression via CXCR5-CXCL13. Blood 138 (19) (2021)
Peter Horak, Christoph Heining, Simon Kreutzfeldt, Barbara Hutter, Andreas Mock, Jennifer Hüllein, Martina Fröhlich, Sebastian Uhrig, Arne Jahn, Andreas Rump, Laura Gieldon, Lino Möhrmann, Dorothea Hanf, Veronica Teleanu, Christoph E Heilig, Daniel B Lipka, Michael Allgäuer, Leo Ruhnke, Andreas Laßmann, Volker Endris, Olaf Neumann, Roland Penzel, Katja Beck, Daniela Richter, Ulrike Winter, Stephan Wolf, Katrin Pfütze, Christina Geörg, Bettina Meißburger, Ivo Buchhalter, Marinela Augustin, Walter E Aulitzky, Peter Hohenberger, Matthias Kroiss, Peter Schirmacher, Richard F Schlenk, Ulrich Keilholz, Frederick Klauschen, Gunnar Folprecht, Sebastian Bauer, Jens Thomas Siveke, Christian H Brandts, Thomas Kindler, Melanie Börries, Anna L Illert, Nikolas von Bubnoff, Philipp J Jost, Karsten Spiekermann, Michael Bitzer, Klaus Schulze-Osthoff, Christof von Kalle, Barbara Klink, Benedikt Brors, Albrecht Stenzinger, Evelin Schröck, Daniel Hübschmann, Wilko Weichert, Hanno Glimm, Stefan Fröhling
Comprehensive Genomic and Transcriptomic Analysis for Guiding Therapeutic Decisions in Patients with Rare Cancers. Cancer discovery 11 (11) (2021)
Charlotte M Niemeyer, Christian Flotho, Daniel B Lipka, Jan Starý, Claudia Rossig, Andre Baruchel, Thomas Klingebiel, Concetta Micalizzi, Gérard Michel, Karsten Nysom, Susana Rives, Markus Schmugge Liner, Marco Zecca, Maximilian Schönung, Irith Baumann, Peter Noellke, Bouchra Benettaib, Noha Biserna, Jennifer Poon, Mathew Simcock, Meera Patturajan, Daniel Menezes, Allison Gaudy, Marry M van den Heuvel-Eibrink, Franco Locatelli
Response to upfront azacitidine in juvenile myelomonocytic leukemia in the AZA-JMML-001 trial. Blood advances 5 (14) (2021)
Melinda Czeh, Sina Stäble, Stephen Krämer, Lena Tepe, Sweta Talyan, Joana Carrelha, Yiran Meng, Barbara Heitplatz, Marius Schwabenland, Michael D Milsom, Christoph Plass, Marco Prinz, Matthias Schlesner, Miguel A Andrade-Navarro, Claus Nerlov, Sten Eirik W Jacobsen, Daniel B Lipka, Frank Rosenbauer
DNMT1 Deficiency Impacts on Plasmacytoid Dendritic Cells in Homeostasis and Autoimmune Disease. Journal of immunology (Baltimore, Md. : 1950) 208 (2) (2021)
Julia Höhn, Achim Hekler, Eva Krieghoff-Henning, Jakob Nikolas Kather, Jochen Sven Utikal, Friedegund Meier, Frank Friedrich Gellrich, Axel Hauschild, Lars Einar French, Justin Gabriel Schlager, Kamran Ghoreschi, Tabea Wilhelm, Heinz Kutzner, Markus Vincent Heppt, Sebastian Haferkamp, Wiebke Sondermann, Dirk Schadendorf, Bastian Schilling, Roman Christoph Maron, Max Schmitt, Tanja Jutzi, Stefan Fröhling, Daniel B Lipka, Titus Josef Brinker
Integrating Patient Data Into Skin Cancer Classification Using Convolutional Neural Networks: Systematic Review. Journal of medical Internet research 23 (7) (2021)
Justyna A Wierzbinska, Reka Toth, Naveed Ishaque, Karsten Rippe, Jan-Philipp Mallm, Lara C Klett, Daniel Mertens, Thorsten Zenz, Thomas Hielscher, Marc Seifert, Ralf Küppers, Yassen Assenov, Pavlo Lutsik, Stephan Stilgenbauer, Philipp M Roessner, Martina Seiffert, John Byrd, Christopher C Oakes, Christoph Plass, Daniel B Lipka
Methylome-based cell-of-origin modeling (Methyl-COOM) identifies aberrant expression of immune regulatory molecules in CLL. Genome medicine 12 (1) (2020)
Christoph E Heilig, Peter Horak, Daniel B Lipka, Andreas Mock, Sebastian Uhrig, Simon Kreutzfeldt, Susan Richter, Laura Gieldon, Martina Fröhlich, Barbara Hutter, Daniel Hübschmann, Veronica Teleanu, Johann-Wilhelm Schmier, Johannes Philipzen, Bettina Beuthien-Baumann, Evelin Schröck, Andreas von Deimling, Sebastian Bauer, Christoph Heining, Gunhild Mechtersheimer, Albrecht Stenzinger, Benedikt Brors, Eva Wardelmann, Hanno Glimm, Wolfgang Hartmann, Stefan Fröhling
Germline SDHB-inactivating mutation in gastric spindle cell sarcoma. Genes, chromosomes & cancer 59 (10) (2020)
Maximilian Schönung, Jana Hess, Pascal Bawidamann, Sina Stäble, Joschka Hey, Jens Langstein, Yassen Assenov, Dieter Weichenhan, Pavlo Lutsik, Daniel B Lipka
AmpliconDesign - an interactive web server for the design of high-throughput targeted DNA methylation assays. Epigenetics 16 (9) (2020)
Maximilian Schönung, Julia Meyer, Peter Noellke, Adam B Olshen, Mark Hartmann, Norihiro Murakami, Manabu Wakamatsu, Yusuke Okuno, Christoph Plass, Mignon L Loh, Charlotte M Niemeyer, Hideki Muramatsu, Christian Flotho, Elliot Stieglitz, Daniel B Lipka
International Consensus Definition of DNA Methylation Subgroups in Juvenile Myelomonocytic Leukemia. Clinical cancer research : an official journal of the American Association for Cancer Research 27 (1) (2020)
Swati Garg, Armando Reyes-Palomares, Lixiazi He, Anne Bergeron, Vincent-Philippe Lavallée, Sébastien Lemieux, Patrick Gendron, Christian Rohde, Jianglong Xia, Prarabdha Jagdhane, Carsten Muller-Tidow, Daniel B Lipka, Suzan Imren, R Keith Humphries, Claudia Waskow, Binje Vick, Irmela Jeremias, Guillaume Richard Carpentier, Josée Hébert, Guy Sauvageau, Judith Barbara Zaugg, Frédéric Barabé, Caroline Pabst
Hepatic leukemia factor is a novel leukemic stem cell regulator in DNMT3A, NPM1, and FLT3-ITD triple-mutated AML. Blood 134 (3) (2019)
Christopher F Krombholz, Lorena Gallego-Villar, Sushree S Sahoo, Pritam Kumar Panda, Marcin W Wlodarski, Konrad Aumann, Mark Hartmann, Daniel B Lipka, Michael Daskalakis, Christoph Plass, Charlotte M Niemeyer, Miriam Erlacher, Christian Flotho
Azacitidine is effective for targeting leukemia-initiating cells in juvenile myelomonocytic leukemia. Leukemia 33 (7) (2019)
Katharina Schlereth, Dieter Weichenhan, Tobias Bauer, Tina Heumann, Evangelia Giannakouri, Daniel B Lipka, Samira Jaeger, Matthias Schlesner, Patrick Aloy, Roland Eils, Christoph Plass, Hellmut G Augustin
The transcriptomic and epigenetic map of vascular quiescence in the continuous lung endothelium. eLife 7 (2018)
Daniel B Lipka, Tania Witte Tobar, Reka Toth, Jing Yang, Manuel Wiesenfarth, Peter Noellke, Alexandra Fischer, David Brocks, Zuguang Gu, Jeongbin Park, Brigitte Strahm, Marcin W Wlodarski, Ayami Yoshimi, Rainer Claus, Michael Lübbert, Hauke Busch, Melanie Boerries, Mark Hartmann, Maximilian Schönung, Umut Kilik, Jens Langstein, Justyna A Wierzbinska, Caroline Pabst, Swati Garg, Albert Català, Barbara De Moerloose, Michael Dworzak, Henrik Hasle, Franco Locatelli, Riccardo Masetti, Markus Schmugge, Owen Smith, Jan Stary, Marek Ussowicz, Marry M van den Heuvel-Eibrink, Yassen Assenov, Matthias Schlesner, Charlotte Niemeyer, Christian Flotho, Christoph Plass
RAS-pathway mutation patterns define epigenetic subclasses in juvenile myelomonocytic leukemia. Nature communications 8 (1) (2017)
Elliot Stieglitz, Tali Mazor, Adam B Olshen, Huimin Geng, Laura C Gelston, Jon Akutagawa, Daniel B Lipka, Christoph Plass, Christian Flotho, Farid F Chehab, Benjamin S Braun, Joseph F Costello, Mignon L Loh
Genome-wide DNA methylation is predictive of outcome in juvenile myelomonocytic leukemia. Nature communications 8 (1) (2017)
Ruth Merkle, Bernhard Steiert, Florian Salopiata, Sofia Depner, Andreas Raue, Nao Iwamoto, Max Schelker, Helge Hass, Marvin Wäsch, Martin E Böhm, Oliver Mücke, Daniel B Lipka, Christoph Plass, Wolf D Lehmann, Clemens Kreutz, Jens Timmer, Marcel Schilling, Ursula Klingmüller
Identification of Cell Type-Specific Differences in Erythropoietin Receptor Signaling in Primary Erythroid and Lung Cancer Cells. PLoS computational biology 12 (8) (2016)