Transcriptional drift in aging cells: A global decontroller.
Tyler MatsuzakiCorey WeistuchAdam de GraffKen A DillGábor BalázsiPublished in: Proceedings of the National Academy of Sciences of the United States of America (2024)
As cells age, they undergo a remarkable global change: In transcriptional drift, hundreds of genes become overexpressed while hundreds of others become underexpressed. Using archetype modeling and Gene Ontology analysis on data from aging Caenorhabditis elegans worms, we find that the up-regulated genes code for sensory proteins upstream of stress responses and down-regulated genes are growth- and metabolism-related. We observe similar trends within human fibroblasts, suggesting that this process is conserved in higher organisms. We propose a simple mechanistic model for how such global coordination of multiprotein expression levels may be achieved by the binding of a single factor that concentrates with age in C. elegans . A key implication is that a cell's own responses are part of its aging process, so unlike wear-and-tear processes, intervention might be able to modulate these effects.
Keyphrases
- transcription factor
- genome wide identification
- genome wide
- induced apoptosis
- cell cycle arrest
- randomized controlled trial
- endothelial cells
- genome wide analysis
- bioinformatics analysis
- poor prognosis
- endoplasmic reticulum stress
- dna methylation
- signaling pathway
- oxidative stress
- single cell
- stem cells
- copy number
- cell therapy
- heat shock
- bone marrow
- mesenchymal stem cells
- pi k akt
- induced pluripotent stem cells
- extracellular matrix