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simAIRR: simulation of adaptive immune repertoires with realistic receptor sequence sharing for benchmarking of immune state prediction methods.

Chakravarthi KanduriLonneke SchefferMilena PavlovićKnut Dagestad RandMaria ChernigovskayaOz PirvandyGur YaariVictor GreiffGeir Kjetil F Sandve
Published in: GigaScience (2023)
This study sheds light on the potential shortcut learning opportunities for ML methods that can arise with the state-of-the-art way of simulating AIRR datasets. simAIRR is available as a Python package: https://github.com/KanduriC/simAIRR.
Keyphrases
  • social media
  • rna seq