Lonneke Scheffer

Publication Activity (10 Years)

Years Active: 2021-2023
Publications (10 Years): 9

Top Topics

Machine Learning

Top Venues

Nature computational science

Genome research

PLoS computational biology

This page only lists publications with an associated author ORCID identifier.

Publications

Chakravarthi Kanduri, Lonneke Scheffer, Milena Pavlović, Knut Dagestad Rand, Maria Chernigovskaya, Oz Pirvandy, Gur Yaari, Victor Greiff, Geir Kjetil F Sandve
simAIRR: simulation of adaptive immune repertoires with realistic receptor sequence sharing for benchmarking of immune state prediction methods. GigaScience 12 (2023)
Chakravarthi Kanduri, Milena Pavlović, Lonneke Scheffer, Keshav Motwani, Maria Chernigovskaya, Victor Greiff, Geir Kjetil F Sandve
Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification. GigaScience 11 (2022)
Torbjørn Rognes, Lonneke Scheffer, Victor Greiff, Geir Kjetil F Sandve
CompAIRR: ultra-fast comparison of adaptive immune receptor repertoires by exact and approximate sequence matching. Bioinformatics (Oxford, England) 38 (17) (2022)
Rahmad Akbar, Philippe A Robert, Cédric R Weber, Michael Widrich, Robert Frank, Milena Pavlović, Lonneke Scheffer, Maria Chernigovskaya, Igor Snapkov, Andrei Slabodkin, Brij Bhushan Mehta, Enkelejda Miho, Fridtjof Lund-Johansen, Jan Terje Andersen, Sepp Hochreiter, Ingrid Hobæk Haff, Guenter Klambauer, Geir Kjetil F Sandve, Victor Greiff
In silico proof of principle of machine learning-based antibody design at unconstrained scale. mAbs 14 (1) (2022)
Philippe A Robert, Rahmad Akbar, Robert Frank, Milena Pavlović, Michael Widrich, Igor Snapkov, Andrei Slabodkin, Maria Chernigovskaya, Lonneke Scheffer, Eva Smorodina, Puneet Rawat, Brij Bhushan Mehta, Mai Ha Vu, Ingvild Frøberg Mathisen, Aurél Prósz, Krzysztof Abram, Alex Olar, Enkelejda Miho, Dag Trygve Tryslew Haug, Fridtjof Lund-Johansen, Sepp Hochreiter, Ingrid Hobæk Haff, Günter Klambauer, Geir Kjetil F Sandve, Victor Greiff
Unconstrained generation of synthetic antibody-antigen structures to guide machine learning methodology for antibody specificity prediction. Nature computational science 2 (12) (2022)
Philippe A Robert, Rahmad Akbar, Robert Frank, Milena Pavlović, Michael Widrich, Igor Snapkov, Andrei Slabodkin, Maria Chernigovskaya, Lonneke Scheffer, Eva Smorodina, Puneet Rawat, Brij Bhushan Mehta, Mai Ha Vu, Ingvild Frøberg Mathisen, Aurél Prósz, Krzysztof Abram, Alex Olar, Enkelejda Miho, Dag Trygve Tryslew Haug, Fridtjof Lund-Johansen, Sepp Hochreiter, Ingrid Hobæk Haff, Günter Klambauer, Geir Kjetil F Sandve, Victor Greiff
Unconstrained generation of synthetic antibody-antigen structures to guide machine learning methodology for antibody specificity prediction. Nature computational science 2 (12) (2022)
Philippe A Robert, Rahmad Akbar, Robert Frank, Milena Pavlović, Michael Widrich, Igor Snapkov, Andrei Slabodkin, Maria Chernigovskaya, Lonneke Scheffer, Eva Smorodina, Puneet Rawat, Brij Bhushan Mehta, Mai Ha Vu, Ingvild Frøberg Mathisen, Aurél Prósz, Krzysztof Abram, Alex Olar, Enkelejda Miho, Dag Trygve Tryslew Haug, Fridtjof Lund-Johansen, Sepp Hochreiter, Ingrid Hobæk Haff, Günter Klambauer, Geir Kjetil F Sandve, Victor Greiff
Unconstrained generation of synthetic antibody-antigen structures to guide machine learning methodology for antibody specificity prediction. Nature computational science 2 (12) (2022)
Andrei Slabodkin, Maria Chernigovskaya, Ivana Mikocziova, Rahmad Akbar, Lonneke Scheffer, Milena Pavlović, Habib Bashour, Igor Snapkov, Brij Bhushan Mehta, Cédric R Weber, José Gutiérrez Marcos, Ludvig M Sollid, Ingrid Hobæk Haff, Geir Kjetil F Sandve, Philippe A Robert, Victor Greiff
Individualized VDJ recombination predisposes the available Ig sequence space. Genome research (2021)
Gabriel Balaban, Ivar Grytten, Knut Dagestad Rand, Lonneke Scheffer, Geir Kjetil F Sandve
Ten simple rules for quick and dirty scientific programming. PLoS computational biology 17 (3) (2021)