Metabolomic Signature Discriminates Normal Human Cornea from Keratoconus-A Pilot GC/MS Study.
Anna WojakowskaMonika PietrowskaPiotr WidlakDariusz DobrowolskiBoguslawa Orzechowska-WylegalaDorota TarnawskaPublished in: Molecules (Basel, Switzerland) (2020)
The molecular etiology of keratoconus (KC), a pathological condition of the human cornea, remains unclear. The aim of this work was to perform profiling of metabolites and identification of features discriminating this pathology from the normal cornea. The combination of gas chromatography and mass spectrometry (GC/MS) techniques has been applied for profiling and identification of metabolites in corneal buttons from 6 healthy controls and 7 KC patients. An untargeted GC/MS-based approach allowed the detection of 377 compounds, including 46 identified unique metabolites, whose levels enabled the separation of compared groups of samples in unsupervised hierarchical cluster analysis. There were 13 identified metabolites whose levels differentiated between groups of samples. Downregulation of several carboxylic acids, fatty acids, and steroids was observed in KC when compared to the normal cornea. Metabolic pathways associated with compounds that discriminated both groups were involved in energy production, lipid metabolism, and amino acid metabolism. An observed signature may reflect cellular processes involved in the development of KC pathology, including oxidative stress and inflammation.
Keyphrases
- mass spectrometry
- gas chromatography
- ms ms
- oxidative stress
- liquid chromatography
- endothelial cells
- high resolution mass spectrometry
- fatty acid
- tandem mass spectrometry
- end stage renal disease
- amino acid
- chronic kidney disease
- newly diagnosed
- ejection fraction
- induced pluripotent stem cells
- gas chromatography mass spectrometry
- high performance liquid chromatography
- machine learning
- high resolution
- single cell
- pluripotent stem cells
- cell proliferation
- randomized controlled trial
- signaling pathway
- dna damage
- prognostic factors
- peritoneal dialysis
- induced apoptosis
- ischemia reperfusion injury
- simultaneous determination
- study protocol
- optical coherence tomography
- wound healing
- diabetic rats
- data analysis