High-Throughput Genotyping of CRISPR/Cas Edited Cells in 96-Well Plates.
Lea NussbaumJelena M TeleniusStephanie HillPriscila P HirschfeldMaria C Suciunull nullDamien J DownesJim R HughesPublished in: Methods and protocols (2018)
The emergence in recent years of DNA editing technologies-Zinc finger nucleases (ZFNs), transcription activator-like effector (TALE) guided nucleases (TALENs), clustered regularly interspaced short palindromic repeats (CRISPR)/Cas family enzymes, and Base-Editors-have greatly increased our ability to generate hundreds of edited cells carrying an array of alleles, including single-nucleotide substitutions. However, the infrequency of homology-dependent repair (HDR) in generating these substitutions in general requires the screening of large numbers of edited cells to isolate the sequence change of interest. Here we present a high-throughput method for the amplification and barcoding of edited loci in a 96-well plate format. After barcoding, plates are indexed as pools which permits multiplexed sequencing of hundreds of clones simultaneously. This protocol works at high success rate with more than 94% of clones successfully genotyped following analysis.
Keyphrases
- crispr cas
- genome editing
- high throughput
- induced apoptosis
- cell cycle arrest
- single cell
- randomized controlled trial
- genome wide
- signaling pathway
- high resolution
- cell death
- transcription factor
- gene expression
- dna methylation
- single molecule
- mass spectrometry
- oxidative stress
- inflammatory response
- toll like receptor
- genetic diversity
- data analysis