Damien J Downes (Damien Downes)

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 14

Top Venues

Nature communications

Nature protocols

Methods and protocols

Cancer research

Kansas State University (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

Kansas State University Aug 12 2010 - May 16 2015

United States

PHD :: Plant Pathology

University of Melbourne Feb 01 2006 - Oct 01 2009

Australia

BSC :: Genetics

Publications

Damien J Downes, Alastair L Smith, Magdalena A Karpińska, Taras Velychko, Kevin Christophe Rue-Albrecht, David Sims, Thomas A Milne, James O J Davies, A Marieke Oudelaar, Jim R Hughes
Author Correction: Capture-C: a modular and flexible approach for high-resolution chromosome conformation capture. Nature protocols (2023)
Joseph C Hamley, Hangpeng Li, Nicholas D R Denny, Damien J Downes, James O J Davies
Determining chromatin architecture with Micro Capture-C. Nature protocols (2023)
Dominic D G Owens, Giorgio Anselmi, A Marieke Oudelaar, Damien J Downes, Alessandro Cavallo, Joe R Harman, Ron Schwessinger, Akin Bucakci, Lucas Greder, Sara de Ornellas, Danuta Jeziorska, Jelena Telenius, Jim R Hughes, Marella F T R de Bruijn
Dynamic Runx1 chromatin boundaries affect gene expression in hematopoietic development. Nature communications 13 (1) (2022)
Julia Truch, Damien J Downes, Caroline Scott, E Ravza Gür, Jelena M Telenius, Emmanouela Repapi, Ron Schwessinger, Matthew E Gosden, Jill M Brown, Stephen Taylor, Pak Leng Cheong, Jim R Hughes, Douglas R Higgs, Richard J Gibbons
The chromatin remodeller ATRX facilitates diverse nuclear processes, in a stochastic manner, in both heterochromatin and euchromatin. Nature communications 13 (1) (2022)
Damien J Downes, Alastair L Smith, Magdalena A Karpińska, Taras Velychko, Kevin Christophe Rue-Albrecht, David Sims, Thomas A Milne, James O J Davies, A Marieke Oudelaar, Jim R Hughes
Capture-C: a modular and flexible approach for high-resolution chromosome conformation capture. Nature protocols 17 (2) (2022)
Lance D Hentges, Martin J Sergeant, Christopher B Cole, Damien J Downes, Jim R Hughes, Stephen Taylor
LanceOtron: a deep learning peak caller for genome sequencing experiments. Bioinformatics (Oxford, England) 38 (18) (2022)
Damien J Downes, Amy R Cross, Peng Hua, Nigel A Roberts, Ron Schwessinger, Antony J Cutler, Altar M Munis, Jill M Brown, Olga Mielczarek, Carlos E de Andrea, Ignacio Melero, null null, Deborah R Gill, Stephen C Hyde, Julian C Knight, John A Todd, Stephen N Sansom, Fadi Issa, James O J Davies, Jim R Hughes
Identification of LZTFL1 as a candidate effector gene at a COVID-19 risk locus. Nature genetics 53 (11) (2021)
Andrew J King, Duantida Songdej, Damien J Downes, Robert A Beagrie, Siyu Liu, Megan Buckley, Peng Hua, Maria C Suciu, A Marieke Oudelaar, Lars L P Hanssen, Danuta Jeziorska, Nigel A Roberts, Stephanie J Carpenter, Helena S Francis, Jelena Telenius, Aude-Anais Olijnik, Jacqueline A Sharpe, Jacqueline Sloane-Stanley, Jennifer Eglinton, Mira T Kassouf, Stuart H Orkin, Len A Pennacchio, James O J Davies, Jim R Hughes, Douglas R Higgs, Christian Babbs
Reactivation of a developmentally silenced embryonic globin gene. Nature communications 12 (1) (2021)
Peng Hua, Mohsin Badat, Lars L P Hanssen, Lance D Hentges, Nicholas T Crump, Damien J Downes, Danuta M Jeziorska, A Marieke Oudelaar, Ron Schwessinger, Stephen Taylor, Thomas A Milne, Jim R Hughes, Douglas R Higgs, James O J Davies
Defining genome architecture at base-pair resolution. Nature 595 (7865) (2021)
Damien J Downes, Robert A Beagrie, Matthew E Gosden, Jelena Telenius, Stephanie J Carpenter, Lea Nussbaum, Sara De Ornellas, Martin Sergeant, Chris Q Eijsbouts, Ron Schwessinger, Jon Kerry, Nigel A Roberts, Arun Shivalingam, Afaf Helmy El-Sagheer, A Marieke Oudelaar, Tom Brown, Veronica J Buckle, James O J Davies, Jim R Hughes
High-resolution targeted 3C interrogation of cis-regulatory element organization at genome-wide scale. Nature communications 12 (1) (2021)
Yavor K Bozhilov, Damien J Downes, Jelena Telenius, A Marieke Oudelaar, Emmanuel N Olivier, Joanne C Mountford, Jim R Hughes, Richard J Gibbons, Douglas R Higgs
A gain-of-function single nucleotide variant creates a new promoter which acts as an orientation-dependent enhancer-blocker. Nature communications 12 (1) (2021)
Martin J Sergeant, Jim R Hughes, Lance D Hentges, Gerton Lunter, Damien J Downes, Stephen Taylor
Multi Locus View: an extensible web-based tool for the analysis of genomic data. Communications biology 4 (1) (2021)
Ana Miar, Esther Arnaiz, Esther Bridges, Shaunna Beedie, Adam P Cribbs, Damien J Downes, Robert A Beagrie, Jan Rehwinkel, Adrian L Harris
Hypoxia Induces Transcriptional and Translational Downregulation of the Type I IFN Pathway in Multiple Cancer Cell Types. Cancer research 80 (23) (2020)
Lea Nussbaum, Jelena M Telenius, Stephanie Hill, Priscila P Hirschfeld, Maria C Suciu, null null, Damien J Downes, Jim R Hughes
High-Throughput Genotyping of CRISPR/Cas Edited Cells in 96-Well Plates. Methods and protocols 1 (3) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Damien J Downes (Damien Downes)