Standards in genomic sciences

Keyphrases

Publications

volume 13, 2018

Rakshak Kumar, Vishal Acharya, Dharam Singh, Sanjay Kumar
Strategies for high-altitude adaptation revealed from high-quality draft genome of non-violacein producing Janthinobacterium lividum ERGS5:01. Standards in genomic sciences 13 (2018)
Samuel M Luedin, Joël F Pothier, Francesco Danza, Nicola Storelli, Niels-Ulrik Frigaard, Matthias Wittwer, Mauro Tonolla
Complete genome sequence of "Thiodictyon syntrophicum" sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno. Standards in genomic sciences 13 (2018)
Anish K Pandey, David W Cleary, Jay R Laver, Martin C J Maiden, Xavier Didelot, Andrew Gorringe, Robert C Read
Correction to: Neisseria lactamica Y92-1009 complete genome sequence. Standards in genomic sciences 13 (2018)
Enjuro Harunari, Hisayuki Komaki, Natsuko Ichikawa, Akira Hosoyama, Akane Kimura, Moriyuki Hamada, Yasuhiro Igarashi
Draft genome sequence of Streptomyces hyaluromycini MB-PO13T, a hyaluromycin producer. Standards in genomic sciences 13 (2018)
Jakub Ridl, Jachym Suman, Serena Fraraccio, Miluse Hradilova, Michal Strejcek, Tomas Cajthaml, Andrea Zubrova, Tomas Macek, Hynek Strnad, Ondrej Uhlik
Complete genome sequence of Pseudomonas alcaliphila JAB1 (=DSM 26533), a versatile degrader of organic pollutants. Standards in genomic sciences 13 (2018)
Hyein Jang, Jungha Woo, Youyoung Lee, Flavia Negrete, Samantha Finkelstein, Hannah R Chase, Nicole Addy, Laura Ewing, Junia Jean Gilles Beaubrun, Isha Patel, Jayanthi Gangiredla, Athmanya Eshwar, Ziad W Jaradat, Kunho Seo, Srikumar Shabarinath, Séamus Fanning, Roger Stephan, Angelika Lehner, Ben D Tall, Gopal R Gopinath
Draft genomes of Cronobacter sakazakii strains isolated from dried spices bring unique insights into the diversity of plant-associated strains. Standards in genomic sciences 13 (2018)
Denis S Grouzdev, Maria S Rysina, Irina A Bryantseva, Vladimir M Gorlenko, Vasil A Gaisin
Draft genome sequences of 'Candidatus Chloroploca asiatica' and 'Candidatus Viridilinea mediisalina', candidate representatives of the Chloroflexales order: phylogenetic and taxonomic implications. Standards in genomic sciences 13 (2018)
Ruiqi Yang, Guangxiu Liu, Tuo Chen, Wei Zhang, Gaosen Zhang, Sijing Chang
The complete genomic sequence of a novel cold-adapted bacterium, Planococcus maritimus Y42, isolated from crude oil-contaminated soil. Standards in genomic sciences 13 (2018)
Xia Fan, Jingwei Tang, Li Nie, Jing Huang, Gejiao Wang
High-quality-draft genome sequence of the heavy metal resistant and exopolysaccharides producing bacterium Mucilaginibacter pedocola TBZ30T. Standards in genomic sciences 13 (2018)
Jong-Hyun Jung, Min-Ho Joe, Dong-Ho Kim, Hyun Park, Jong-Il Choi, Sangyong Lim
Complete genome sequence of Planococcus sp. PAMC21323 isolated from Antarctica and its metabolic potential to detoxify pollutants. Standards in genomic sciences 13 (2018)
Chava L Weitzman, Richard L Tillett, Franziska C Sandmeier, C Richard Tracy, David Alvarez-Ponce
High quality draft genome sequence of Mycoplasma testudineum strain BH29T, isolated from the respiratory tract of a desert tortoise. Standards in genomic sciences 13 (2018)
Samuel C Epstein, Louise K Charkoudian, Marnix H Medema
A standardized workflow for submitting data to the Minimum Information about a Biosynthetic Gene cluster (MIBiG) repository: prospects for research-based educational experiences. Standards in genomic sciences 13 (2018)
Alejandro Mateos-Rivera, Tajul Islam, Ian P G Marshall, Lars Schreiber, Lise Øvreås
High-quality draft genome of the methanotroph Methylovulum psychrotolerans Str. HV10-M2 isolated from plant material at a high-altitude environment. Standards in genomic sciences 13 (2018)
Dagmar Waltemath, Frank T Bergmann, Claudine Chaouiya, Tobias Czauderna, Padraig Gleeson, Carole Goble, Martin Golebiewski, Michael Hucka, Nick Juty, Olga Krebs, Nicolas Le Novère, Huaiyu Mi, Ion I Moraru, Chris J Myers, David Nickerson, Brett G Olivier, Nicolas Rodriguez, Falk Schreiber, Lucian Smith, Fengkai Zhang, Eric Bonnet
Correction to: Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE). Standards in genomic sciences 13 (2018)
Xinye Wang, Yantao Luo, Dongying Liu, Jiamei Wang, Shi Wei, Liang Zhao
Complete genome sequence of the Robinia pseudoacacia L. symbiont Mesorhizobium amorphae CCNWGS0123. Standards in genomic sciences 13 (2018)
David Alvarez-Ponce, Chava L Weitzman, Richard L Tillett, Franziska C Sandmeier, C Richard Tracy
High quality draft genome sequences of Mycoplasma agassizii strains PS6T and 723 isolated from Gopherus tortoises with upper respiratory tract disease. Standards in genomic sciences 13 (2018)
Alexandra B Walczak, Nathan Yee, Lily Y Young
Draft genome sequence of Bosea sp. WAO an arsenite and sulfide oxidizer isolated from a pyrite rock outcrop in New Jersey. Standards in genomic sciences 13 (2018)
Juan Liang, Anne Hoffrichter, Andreas Brachmann, Macarena Marín
Complete genome of Rhizobium leguminosarum Norway, an ineffective Lotus micro-symbiont. Standards in genomic sciences 13 (2018)
Nassima Illikoud, Christophe Klopp, Alain Roulet, Olivier Bouchez, Nathalie Marsaud, Emmanuel Jaffrès, Monique Zagorec
One complete and three draft genome sequences of four Brochothrix thermosphacta strains, CD 337, TAP 175, BSAS1 3 and EBP 3070. Standards in genomic sciences 13 (2018)
Gamaliel López-Leal, Fernanda Cornejo-Granados, Juan Manuel Hurtado-Ramírez, Alfredo Mendoza-Vargas, Ochoa-Leyva Adrian
Functional and taxonomic classification of a greenhouse water drain metagenome. Standards in genomic sciences 13 (2018)
Xian Xia, Jiahong Li, Zijie Zhou, Dan Wang, Jing Huang, Gejiao Wang
High-quality-draft genome sequence of the multiple heavy metal resistant bacterium Pseudaminobacter manganicus JH-7T. Standards in genomic sciences 13 (2018)
Dimitra Sakoula, Boris Nowka, Eva Spieck, Holger Daims, Sebastian Lücker
The draft genome sequence of "Nitrospira lenta" strain BS10, a nitrite oxidizing bacterium isolated from activated sludge. Standards in genomic sciences 13 (2018)
Cátia Pinto, Susana Sousa, Hugo Froufe, Conceição Egas, Christophe Clément, Florence Fontaine, Ana C Gomes
Draft genome sequence of Bacillus amyloliquefaciens subsp. plantarum strain Fito_F321, an endophyte microorganism from Vitis vinifera with biocontrol potential. Standards in genomic sciences 13 (2018)
José L Steffani-Vallejo, Marion E Brunck, Erika Y Acosta-Cruz, Rafael Montiel, Francisco Barona-Gómez
Genomic insights into Mycobacterium simiae human colonization. Standards in genomic sciences 13 (2018)
Honghui Liu, Xinchun Liu, Jinqing Li
Correction to: Complete genome of a novel virulent phage ST0 lysing Escherichia coli H8. Standards in genomic sciences 13 (2018)
Mamadou Beye, Sofiane Bakour, Sory Ibrahima Traore, Jaishriram Rathored, Noémie Labas, Didier Raoult, Pierre Edouard Fournier
Draft genome sequence of Fermentimonas caenicola strain SIT8, isolated from the human gut. Standards in genomic sciences 13 (2018)
Juan J Fuentes-Valdés, Katia Soto-Liebe, Danilo Pérez-Pantoja, Javier Tamames, Lucy Belmar, Carlos Pedrós-Alió, Daniel Garrido, Mónica Vásquez
Draft genome sequences of Cylindrospermopsis raciborskii strains CS-508 and MVCC14, isolated from freshwater bloom events in Australia and Uruguay. Standards in genomic sciences 13 (2018)
Insa Bakenhus, Sonja Voget, Anja Poehlein, Thorsten Brinkhoff, Rolf Daniel, Meinhard Simon
Genome sequence of Planktotalea frisia type strain (SH6-1T), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom. Standards in genomic sciences 13 (2018)
Mohamed Seghir Daas, Albert Remus R Rosana, Jeella Z Acedo, Malika Douzane, Farida Nateche, Salima Kebbouche-Gana, John C Vederas
Insights into the draft genome sequence of bioactives-producing Bacillus thuringiensis DNG9 isolated from Algerian soil-oil slough. Standards in genomic sciences 13 (2018)
Doglas Parise, Mariana T D Parise, Marcus V C Viana, Adrian V Muñoz-Bucio, Yazmin A Cortés-Pérez, Beatriz Arellano-Reynoso, Efrén Díaz-Aparicio, Fernanda A Dorella, Felipe L Pereira, Alex F Carvalho, Henrique C P Figueiredo, Preetam Ghosh, Debmalya Barh, Anne C P Gomide, Vasco A C Azevedo
First genome sequencing and comparative analyses of Corynebacterium pseudotuberculosis strains from Mexico. Standards in genomic sciences 13 (2018)
Joaquin Bernal-Bayard, Laura Gomez-Valero, Aimee Wessel, Varun Khanna, Christiane Bouchier, Jean-Marc Ghigo
Short genome report of cellulose-producing commensal Escherichia coli 1094. Standards in genomic sciences 13 (2018)
Ji-Hyun Yun, Hojun Sung, Hyun Sik Kim, Euon Jung Tak, Woorim Kang, June-Young Lee, Dong-Wook Hyun, Pil Soo Kim, Jin-Woo Bae
Complete genome sequence of the halophile bacterium Kushneria konosiri X49T, isolated from salt-fermented Konosirus punctatus. Standards in genomic sciences 13 (2018)
Yi Li, Xiao-Han Guo, Yan-Ru Dang, Lin-Lin Sun, Xi-Ying Zhang, Xiu-Lan Chen, Qi-Long Qin, Peng Wang
Complete genome sequence of Arcticibacterium luteifluviistationis SM1504T, a cytophagaceae bacterium isolated from Arctic surface seawater. Standards in genomic sciences 13 (2018)
Zhen Yu, Guiqin Yang, Xiaoming Liu, Yueqiang Wang, Li Zhuang, Shungui Zhou
Complete genome sequence of the nitrogen-fixing bacterium Azospirillum humicireducens type strain SgZ-5T. Standards in genomic sciences 13 (2018)
Pierre Faye, Claire Bertrand, Jacques Pédron, Marie-Anne Barny
Draft genomes of "Pectobacterium peruviense" strains isolated from fresh water in France. Standards in genomic sciences 13 (2018)

volume 12, 2017

Laura T Morales, Laura N González-García, María C Orozco, Silvia Restrepo, Martha J Vives
The genomic study of an environmental isolate of Scedosporium apiospermum shows its metabolic potential to degrade hydrocarbons. Standards in genomic sciences 12 (2017)
Romy Chakraborty, Hannah Woo, Paramvir Dehal, Robert Walker, Marcin Zemla, Manfred Auer, Lynne A Goodwin, Alexey Kazakov, Pavel Novichkov, Adam P Arkin, Terry C Hazen
Complete genome sequence of Pseudomonas stutzeri strain RCH2 isolated from a Hexavalent Chromium [Cr(VI)] contaminated site. Standards in genomic sciences 12 (2017)
Nikola Palevich, William J Kelly, Sinead C Leahy, Eric Altermann, Jasna Rakonjac, Graeme T Attwood
The complete genome sequence of the rumen bacterium Butyrivibrio hungatei MB2003. Standards in genomic sciences 12 (2017)
Diogo N Proença, William B Whitman, Nicole Shapiro, Tanja Woyke, Nikos C Kyrpides, Paula V Morais
Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2T. Standards in genomic sciences 12 (2017)
Nils-Kåre Birkeland, Peter Schönheit, Lianna Poghosyan, Anne Fiebig, Hans-Peter Klenk
Complete genome sequence analysis of Archaeoglobus fulgidus strain 7324 (DSM 8774), a hyperthermophilic archaeal sulfate reducer from a North Sea oil field. Standards in genomic sciences 12 (2017)
Akbar Adjie Pratama, Irshad Ul Haq, Rashid Nazir, Maryam Chaib De Mares, Jan Dirk van Elsas
Draft genome sequences of three fungal-interactive Paraburkholderia terrae strains, BS007, BS110 and BS437. Standards in genomic sciences 12 (2017)
Wan Adnawani Meor Osman, Peter van Berkum, Milagros León-Barrios, Encarna Velázquez, Patrick Elia, Rui Tian, Julie Ardley, Margaret Gollagher, Rekha Seshadri, T B K Reddy, Natalia Ivanova, Tanja Woyke, Amrita Pati, Victor Markowitz, Mohamed N Baeshen, Naseebh Nabeeh Baeshen, Nikos Kyrpides, Wayne Reeve
High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain. Standards in genomic sciences 12 (2017)
Carolina Díaz-Cárdenas, Gina López, José David Alzate-Ocampo, Laura N González, Nicole Shapiro, Tanja Woyke, Nikos C Kyrpides, Silvia Restrepo, Sandra Baena
Draft genome sequence of Dethiosulfovibrio salsuginis DSM 21565T an anaerobic, slightly halophilic bacterium isolated from a Colombian saline spring. Standards in genomic sciences 12 (2017)
Inés Martínez-Raudales, Yumiko De La Cruz-Rodríguez, Alejandro Alvarado-Gutiérrez, Julio Vega-Arreguín, Ahuitz Fraire-Mayorga, Miguel Alvarado-Rodríguez, Victor Balderas-Hernández, Saul Fraire-Velázquez
Draft genome sequence of Bacillus velezensis 2A-2B strain: a rhizospheric inhabitant of Sporobolus airoides (Torr.) Torr., with antifungal activity against root rot causing phytopathogens. Standards in genomic sciences 12 (2017)
Miho Watanabe, Riho Tokizawa, Hisaya Kojima, Manabu Fukui
High-quality draft genome sequence of Effusibacillus lacus strain skLN1T, facultative anaerobic spore-former isolated from freshwater lake sediment. Standards in genomic sciences 12 (2017)
Outi Niemi, Pia Laine, Patrik Koskinen, Miia Pasanen, Ville Pennanen, Heidi Harjunpää, Johanna Nykyri, Liisa Holm, Lars Paulin, Petri Auvinen, E Tapio Palva, Minna Pirhonen
Genome sequence of the model plant pathogen Pectobacterium carotovorum SCC1. Standards in genomic sciences 12 (2017)
Kok Gan Chan, Wen-Si Tan
Insights into Cedecea neteri strain M006 through complete genome sequence, a rare bacterium from aquatic environment. Standards in genomic sciences 12 (2017)
Anish K Pandey, David W Cleary, Jay R Laver, Martin C J Maiden, Xavier Didelot, Andrew Gorringe, Robert Charles Read
Neisseria lactamica Y92-1009 complete genome sequence. Standards in genomic sciences 12 (2017)
Emily Denise Melton, Dimitry Y Sorokin, Lex Overmars, Alla L Lapidus, Manoj Pillay, Natalia Ivanova, Tijana Glavina Del Rio, Nikos C Kyrpides, Tanja Woyke, Gerard Muyzer
Draft genome sequence of Dethiobacter alkaliphilus strain AHT1T, a gram-positive sulfidogenic polyextremophile. Standards in genomic sciences 12 (2017)
Hong Cheng, Ying-Yi Huo, Jing Hu, Xue-Wei Xu, Min Wu
High quality draft genome sequence of an extremely halophilic archaeon Natrinema altunense strain AJ2T. Standards in genomic sciences 12 (2017)