Ales Varabyou

Publication Activity (10 Years)

Years Active: 2020-2023
Publications (10 Years): 8

Top Topics

Top Venues

bioRxiv : the preprint server for biology

Genome research

This page only lists publications with an associated author ORCID identifier.

Publications

Ales Varabyou, Markus J Sommer, Beril Erdogdu, Ida Shinder, Ilia Minkin, Kuan-Hao Chao, Sukhwan Park, Jakob Heinz, Christopher Pockrandt, Alaina Shumate, Natalia Rincon, Daniela Puiu, Martin Steinegger, Steven L Salzberg, Mihaela Pertea
CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure. Genome biology 24 (1) (2023)
Beril Erdogdu, Ales Varabyou, Stephanie C Hicks, Steven L Salzberg, Mihaela Pertea
Detecting differential transcript usage in complex diseases with SPIT. bioRxiv : the preprint server for biology (2023)
Paulo Amaral, Silvia Carbonell-Sala, Francisco M De La Vega, Tiago Faial, Adam Frankish, Thomas Gingeras, Roderic Guigo, Jennifer L Harrow, Artemis G Hatzigeorgiou, Rory Johnson, Terence D Murphy, Mihaela Pertea, Kim D Pruitt, Shashikant Pujar, Hazuki Takahashi, Igor Ulitsky, Ales Varabyou, Christine A Wells, Mark Yandell, Piero Carnici, Steven L Salzberg
The status of the human gene catalogue. Nature 622 (7981) (2023)
Ales Varabyou, Beril Erdogdu, Steven L Salzberg, Mihaela Pertea
Investigating Open Reading Frames in Known and Novel Transcripts using ORFanage. bioRxiv : the preprint server for biology (2023)
Amde Selassie Shifera, Christopher Pockrandt, Natalia Rincon, Yuchen Ge, Jennifer Lu, Ales Varabyou, Anne E Jedlicka, Karen Sun, Alan L Scott, Charles Eberhart, Jennifer E Thorne, Steven L Salzberg
Identification of microbial agents in tissue specimens of ocular and periocular sarcoidosis using a metagenomics approach. F1000Research 10 (2021)
Ales Varabyou, Christopher Pockrandt, Steven L Salzberg, Mihaela Pertea
Rapid detection of inter-clade recombination in SARS-CoV-2 with Bolotie. Genetics 218 (3) (2021)
Runxia Liu, Yang-Hui Jimmy Yeh, Ales Varabyou, Jack A Collora, Scott Sherrill-Mix, C Conover Talbot, Sameet Mehta, Kristen Albrecht, Haiping Hao, Hao Zhang, Ross A Pollack, Subul A Beg, Rachela M Calvi, Jianfei Hu, Christine M Durand, Richard F Ambinder, Rebecca Hoh, Steven G Deeks, Jennifer Chiarella, Serena Spudich, Daniel C Douek, Frederic D Bushman, Mihaela Pertea, Ya-Chi Ho
Single-cell transcriptional landscapes reveal HIV-1-driven aberrant host gene transcription as a potential therapeutic target. Science translational medicine 12 (543) (2021)
Ales Varabyou, Steven L Salzberg, Mihaela Pertea
Effects of transcriptional noise on estimates of gene and transcript expression in RNA sequencing experiments. Genome research (2020)