Steven G Deeks (Steve G Deeks, Steven Deeks)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 99

Top Venues

Science (New York, N.Y.)

Nature

PLoS pathogens

Science translational medicine

University of California San Francisco

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California San Francisco

United States

Professor of Medicine

Publications

Michael J Peluso, Dylan Ryder, Robert Richard Flavell, Yingbing Wang, Jelena Levi, Brian H LaFranchi, Tyler-Marie Deveau, Amanda M Buck, Sadie E Munter, Kofi A Asare, Maya Aslam, Walter Koch, Gyula Szabo, Rebecca Hoh, Monika Deswal, Antonio E Rodriguez, Melissa Buitrago, Viva Tai, Uttam Shrestha, Scott Lu, Sarah A Goldberg, Thomas Dalhuisen, Joshua J Vásquez, Matthew S Durstenfeld, Priscilla Y Hsue, J Daniel Kelly, Nitasha A Kumar, Jeffrey N Martin, Aruna Gambhir, Ma Somsouk, Youngho Seo, Steven G Deeks, Zoltan G Laszik, Henry F VanBrocklin, Timothy J Henrich
Tissue-based T cell activation and viral RNA persist for up to 2 years after SARS-CoV-2 infection. Science translational medicine 16 (754) (2024)
Mathias Viard, Colm O'hUigin, Yuko Yuki, Arman A Bashirova, David R Collins, Jonathan M Urbach, Steven M Wolinsky, Susan P Buchbinder, Gregory D Kirk, James J Goedert, Nelson L Michael, David W Haas, Steven G Deeks, Bruce D Walker, Xu G Yu, Mary N Carrington
Impact of HLA class I functional divergence on HIV control. Science (New York, N.Y.) 383 (6680) (2024)
Mathias Viard, Colm O'hUigin, Yuko Yuki, Arman A Bashirova, David R Collins, Jonathan M Urbach, Steven M Wolinsky, Susan P Buchbinder, Gregory D Kirk, James J Goedert, Nelson L Michael, David W Haas, Steven G Deeks, Bruce D Walker, Xu G Yu, Mary N Carrington
Impact of HLA class I functional divergence on HIV control. Science (New York, N.Y.) 383 (6680) (2024)
Mathias Viard, Colm O'hUigin, Yuko Yuki, Arman A Bashirova, David R Collins, Jonathan M Urbach, Steven M Wolinsky, Susan P Buchbinder, Gregory D Kirk, James J Goedert, Nelson L Michael, David W Haas, Steven G Deeks, Bruce D Walker, Xu G Yu, Mary N Carrington
Impact of HLA class I functional divergence on HIV control. Science (New York, N.Y.) 383 (6680) (2024)
Mathias Viard, Colm O'hUigin, Yuko Yuki, Arman A Bashirova, David R Collins, Jonathan M Urbach, Steven M Wolinsky, Susan P Buchbinder, Gregory D Kirk, James J Goedert, Nelson L Michael, David W Haas, Steven G Deeks, Bruce D Walker, Xu G Yu, Mary N Carrington
Impact of HLA class I functional divergence on HIV control. Science (New York, N.Y.) 383 (6680) (2024)
Mathias Viard, Colm O'hUigin, Yuko Yuki, Arman A Bashirova, David R Collins, Jonathan M Urbach, Steven M Wolinsky, Susan P Buchbinder, Gregory D Kirk, James J Goedert, Nelson L Michael, David W Haas, Steven G Deeks, Bruce D Walker, Xu G Yu, Mary N Carrington
Impact of HLA class I functional divergence on HIV control. Science (New York, N.Y.) 383 (6680) (2024)
Michael J Peluso, Dylan Ryder, Robert Richard Flavell, Yingbing Wang, Jelena Levi, Brian H LaFranchi, Tyler-Marie Deveau, Amanda M Buck, Sadie E Munter, Kofi A Asare, Maya Aslam, Walter Koch, Gyula Szabo, Rebecca Hoh, Monika Deswal, Antonio E Rodriguez, Melissa Buitrago, Viva Tai, Uttam Shrestha, Scott Lu, Sarah A Goldberg, Thomas Dalhuisen, Joshua J Vásquez, Matthew S Durstenfeld, Priscilla Y Hsue, J Daniel Kelly, Nitasha A Kumar, Jeffrey N Martin, Aruna Gambhir, Ma Somsouk, Youngho Seo, Steven G Deeks, Zoltan G Laszik, Henry F VanBrocklin, Timothy J Henrich
Tissue-based T cell activation and viral RNA persist for up to 2 years after SARS-CoV-2 infection. Science translational medicine 16 (754) (2024)
Mathias Viard, Colm O'hUigin, Yuko Yuki, Arman A Bashirova, David R Collins, Jonathan M Urbach, Steven M Wolinsky, Susan P Buchbinder, Gregory D Kirk, James J Goedert, Nelson L Michael, David W Haas, Steven G Deeks, Bruce D Walker, Xu G Yu, Mary N Carrington
Impact of HLA class I functional divergence on HIV control. Science (New York, N.Y.) 383 (6680) (2024)
Mathias Viard, Colm O'hUigin, Yuko Yuki, Arman A Bashirova, David R Collins, Jonathan M Urbach, Steven M Wolinsky, Susan P Buchbinder, Gregory D Kirk, James J Goedert, Nelson L Michael, David W Haas, Steven G Deeks, Bruce D Walker, Xu G Yu, Mary N Carrington
Impact of HLA class I functional divergence on HIV control. Science (New York, N.Y.) 383 (6680) (2024)
Scott Lu, Michael J Peluso, David V Glidden, Michelle C Davidson, Kara Lugtu, Jesus Pineda-Ramirez, Michel Tassetto, Miguel Garcia-Knight, Amethyst Zhang, Sarah A Goldberg, Jessica Y Chen, Maya Fortes-Cobby, Sara Park, Ana Martinez, Matthew So, Aidan Donovan, Badri Viswanathan, Rebecca Hoh, Kevin C Donohue, David R McIlwain, Brice L Gaudilliere, Khamal Anglin, Brandon C Yee, Ahmed Chenna, John W Winslow, Christos J Petroupoulos, Steven G Deeks, Melissa Briggs-Hagen, Raul Andino, Claire M Midgley, Jeffrey N Martin, Sharon H Saydah, J Daniel Kelly
Early biological markers of post-acute sequelae of SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Scott Lu, Michael J Peluso, David V Glidden, Michelle C Davidson, Kara Lugtu, Jesus Pineda-Ramirez, Michel Tassetto, Miguel Garcia-Knight, Amethyst Zhang, Sarah A Goldberg, Jessica Y Chen, Maya Fortes-Cobby, Sara Park, Ana Martinez, Matthew So, Aidan Donovan, Badri Viswanathan, Rebecca Hoh, Kevin C Donohue, David R McIlwain, Brice L Gaudilliere, Khamal Anglin, Brandon C Yee, Ahmed Chenna, John W Winslow, Christos J Petroupoulos, Steven G Deeks, Melissa Briggs-Hagen, Raul Andino, Claire M Midgley, Jeffrey N Martin, Sharon H Saydah, J Daniel Kelly
Early biological markers of post-acute sequelae of SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Mathias Viard, Colm O'hUigin, Yuko Yuki, Arman A Bashirova, David R Collins, Jonathan M Urbach, Steven M Wolinsky, Susan P Buchbinder, Gregory D Kirk, James J Goedert, Nelson L Michael, David W Haas, Steven G Deeks, Bruce D Walker, Xu G Yu, Mary N Carrington
Impact of HLA class I functional divergence on HIV control. Science (New York, N.Y.) 383 (6680) (2024)
Michael J Peluso, Dylan Ryder, Robert Richard Flavell, Yingbing Wang, Jelena Levi, Brian H LaFranchi, Tyler-Marie Deveau, Amanda M Buck, Sadie E Munter, Kofi A Asare, Maya Aslam, Walter Koch, Gyula Szabo, Rebecca Hoh, Monika Deswal, Antonio E Rodriguez, Melissa Buitrago, Viva Tai, Uttam Shrestha, Scott Lu, Sarah A Goldberg, Thomas Dalhuisen, Joshua J Vásquez, Matthew S Durstenfeld, Priscilla Y Hsue, J Daniel Kelly, Nitasha A Kumar, Jeffrey N Martin, Aruna Gambhir, Ma Somsouk, Youngho Seo, Steven G Deeks, Zoltan G Laszik, Henry F VanBrocklin, Timothy J Henrich
Tissue-based T cell activation and viral RNA persist for up to 2 years after SARS-CoV-2 infection. Science translational medicine 16 (754) (2024)
Mathias Viard, Colm O'hUigin, Yuko Yuki, Arman A Bashirova, David R Collins, Jonathan M Urbach, Steven M Wolinsky, Susan P Buchbinder, Gregory D Kirk, James J Goedert, Nelson L Michael, David W Haas, Steven G Deeks, Bruce D Walker, Xu G Yu, Mary N Carrington
Impact of HLA class I functional divergence on HIV control. Science (New York, N.Y.) 383 (6680) (2024)
Mathias Viard, Colm O'hUigin, Yuko Yuki, Arman A Bashirova, David R Collins, Jonathan M Urbach, Steven M Wolinsky, Susan P Buchbinder, Gregory D Kirk, James J Goedert, Nelson L Michael, David W Haas, Steven G Deeks, Bruce D Walker, Xu G Yu, Mary N Carrington
Impact of HLA class I functional divergence on HIV control. Science (New York, N.Y.) 383 (6680) (2024)
Michael J Peluso, Dylan Ryder, Robert Richard Flavell, Yingbing Wang, Jelena Levi, Brian H LaFranchi, Tyler-Marie Deveau, Amanda M Buck, Sadie E Munter, Kofi A Asare, Maya Aslam, Walter Koch, Gyula Szabo, Rebecca Hoh, Monika Deswal, Antonio E Rodriguez, Melissa Buitrago, Viva Tai, Uttam Shrestha, Scott Lu, Sarah A Goldberg, Thomas Dalhuisen, Joshua J Vásquez, Matthew S Durstenfeld, Priscilla Y Hsue, J Daniel Kelly, Nitasha A Kumar, Jeffrey N Martin, Aruna Gambhir, Ma Somsouk, Youngho Seo, Steven G Deeks, Zoltan G Laszik, Henry F VanBrocklin, Timothy J Henrich
Tissue-based T cell activation and viral RNA persist for up to 2 years after SARS-CoV-2 infection. Science translational medicine 16 (754) (2024)
Mathias Viard, Colm O'hUigin, Yuko Yuki, Arman A Bashirova, David R Collins, Jonathan M Urbach, Steven M Wolinsky, Susan P Buchbinder, Gregory D Kirk, James J Goedert, Nelson L Michael, David W Haas, Steven G Deeks, Bruce D Walker, Xu G Yu, Mary N Carrington
Impact of HLA class I functional divergence on HIV control. Science (New York, N.Y.) 383 (6680) (2024)
Scott Lu, Michael J Peluso, David V Glidden, Michelle C Davidson, Kara Lugtu, Jesus Pineda-Ramirez, Michel Tassetto, Miguel Garcia-Knight, Amethyst Zhang, Sarah A Goldberg, Jessica Y Chen, Maya Fortes-Cobby, Sara Park, Ana Martinez, Matthew So, Aidan Donovan, Badri Viswanathan, Rebecca Hoh, Kevin C Donohue, David R McIlwain, Brice L Gaudilliere, Khamal Anglin, Brandon C Yee, Ahmed Chenna, John W Winslow, Christos J Petroupoulos, Steven G Deeks, Melissa Briggs-Hagen, Raul Andino, Claire M Midgley, Jeffrey N Martin, Sharon H Saydah, J Daniel Kelly
Early biological markers of post-acute sequelae of SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Mathias Viard, Colm O'hUigin, Yuko Yuki, Arman A Bashirova, David R Collins, Jonathan M Urbach, Steven M Wolinsky, Susan P Buchbinder, Gregory D Kirk, James J Goedert, Nelson L Michael, David W Haas, Steven G Deeks, Bruce D Walker, Xu G Yu, Mary N Carrington
Impact of HLA class I functional divergence on HIV control. Science (New York, N.Y.) 383 (6680) (2024)
Mathias Viard, Colm O'hUigin, Yuko Yuki, Arman A Bashirova, David R Collins, Jonathan M Urbach, Steven M Wolinsky, Susan P Buchbinder, Gregory D Kirk, James J Goedert, Nelson L Michael, David W Haas, Steven G Deeks, Bruce D Walker, Xu G Yu, Mary N Carrington
Impact of HLA class I functional divergence on HIV control. Science (New York, N.Y.) 383 (6680) (2024)
Mathias Viard, Colm O'hUigin, Yuko Yuki, Arman A Bashirova, David R Collins, Jonathan M Urbach, Steven M Wolinsky, Susan P Buchbinder, Gregory D Kirk, James J Goedert, Nelson L Michael, David W Haas, Steven G Deeks, Bruce D Walker, Xu G Yu, Mary N Carrington
Impact of HLA class I functional divergence on HIV control. Science (New York, N.Y.) 383 (6680) (2024)
Daniel B Reeves, Christian Gaebler, Thiago Y Oliveria, Michael J Peluso, Joshua T Schiffer, Lillian B Cohn, Steven G Deeks, Michel C Nussenzweig
Impact of misclassified defective proviruses on HIV reservoir measurements. Nature communications 14 (1) (2023)
Laura P Kincer, Sarah Beth Joseph, Maria M Gilleece, Blake M Hauser, Sabrina Sizemore, Shuntai Zhou, Clara Di Germanio, Henrik Zetterberg, Dietmar Fuchs, Steven G Deeks, Serena Spudich, Magnus Gisslen, Richard W Price, Ronald Swanstrom
Rebound HIV-1 in cerebrospinal fluid after antiviral therapy interruption is mainly clonally amplified R5 T cell-tropic virus. Nature microbiology (2023)
Abbas Mohammadi, Behzad Etemad, Xin Zhang, Yijia Li, Gregory J Bedwell, Radwa Sharaf, Autumn Kittilson, Meghan Melberg, Colline Wong, Jesse Fajnzylber, Daniel P Worrall, Alex Rosenthal, Hannah Jordan, Nikolaus Jilg, Clarety Kaseke, Francoise Giguel, Xiaodong Lian, Rinki Deo, Elisabeth Gillespie, Rida Chishti, Sara Abrha, Taylor Adams, Abigail Siagian, Peter L Anderson, Steven G Deeks, Michael M Lederman, Sigal Yawetz, Daniel R Kuritzkes, Mathias D Lichterfeld, Athe Tsibris, Mary Carrington, Zabrina L Brumme, Jose R Castillo-Mancilla, Alan N Engelman, Gaurav D Gaiha, Jonathan Z Li
Viral and Host Mediators of Non-Suppressible HIV-1 Viremia. medRxiv : the preprint server for health sciences (2023)
Paul Ogongo, Anthony Tran, Florence Marzan, David Gingrich, Melissa Krone, Francesca Aweeka, Cecilia S Lindestam Arlehamn, Jeffrey N Martin, Steven G Deeks, Peter W Hunt, Joel D Ernst
M. tuberculosis antigen-responsive IL17 + CD4 T cells are disproportionately spared in ART-suppressed HIV. bioRxiv : the preprint server for biology (2023)
Iain C Clark, Prakriti Mudvari, Shravan Thaploo, Samuel Smith, Mohammad Abu-Laban, Mehdi Hamouda, Marc W Theberge, Sakshi Shah, Sung Hee Ko, Liliana Pérez, Daniel G Bunis, James S Lee, Divya Kilam, Saami Zakaria, Sally Choi, Samuel Darko, Amy R Henry, Michael A Wheeler, Rebecca Hoh, Salwan Butrus, Steven G Deeks, Francisco J Quintana, Daniel C Douek, Adam R Abate, Eli A Boritz
HIV silencing and cell survival signatures in infected T cell reservoirs. Nature 614 (7947) (2023)
Iain C Clark, Prakriti Mudvari, Shravan Thaploo, Samuel Smith, Mohammad Abu-Laban, Mehdi Hamouda, Marc W Theberge, Sakshi Shah, Sung Hee Ko, Liliana Pérez, Daniel G Bunis, James S Lee, Divya Kilam, Saami Zakaria, Sally Choi, Samuel Darko, Amy R Henry, Michael A Wheeler, Rebecca Hoh, Salwan Butrus, Steven G Deeks, Francisco J Quintana, Daniel C Douek, Adam R Abate, Eli A Boritz
HIV silencing and cell survival signatures in infected T cell reservoirs. Nature (2023)
Laura P Kincer, Sarah Beth Joseph, Maria M Gilleece, Blake M Hauser, Sabrina Sizemore, Shuntai Zhou, Clara Di Germanio, Henrik Zetterberg, Dietmar Fuchs, Steven G Deeks, Serena Spudich, Magnus Gisslen, Richard W Price, Ronald Swanstrom
Rebound HIV-1 in cerebrospinal fluid after antiviral therapy interruption is mainly clonally amplified R5 T cell-tropic virus. Nature microbiology 8 (2) (2023)
Michael J Peluso, Zoe N Swank, Sarah A Goldberg, Scott Lu, Thomas Dalhuisen, Ella Borberg, Yasmeen Senussi, Michael A Luna, Celina Chang Song, Alexus Clark, Andhy Zamora, Megan Lew, Badri Viswanathan, Beatrice Huang, Khamal Anglin, Rebecca Hoh, Priscila Y Hsue, Matthew S Durstenfeld, Matthew A Spinelli, David V Glidden, Timothy J Henrich, J Daniel Kelly, Steven G Deeks, David R Walt, Jeffrey N Martin
Plasma-based antigen persistence in the post-acute phase of SARS-CoV-2 infection. medRxiv : the preprint server for health sciences (2023)
Srona Sengupta, Josephine Zhang, Madison C Reed, Jeanna Yu, Aeryon Kim, Tatiana N Boronina, Nathan L Board, James O Wrabl, Kevin Shenderov, Robin A Welsh, Weiming Yang, Andrew E Timmons, Rebecca Hoh, Robert N Cole, Steven G Deeks, Janet M Siliciano, Robert F Siliciano, Scheherazade Sadegh-Nasseri
A cell-free antigen processing system informs HIV-1 epitope selection and vaccine design. The Journal of experimental medicine 220 (7) (2023)
Iain C Clark, Prakriti Mudvari, Shravan Thaploo, Samuel Smith, Mohammad Abu-Laban, Mehdi Hamouda, Marc W Theberge, Sakshi Shah, Sung Hee Ko, Liliana Pérez, Daniel G Bunis, James S Lee, Divya Kilam, Saami Zakaria, Sally Choi, Samuel Darko, Amy R Henry, Michael A Wheeler, Rebecca Hoh, Salwan Butrus, Steven G Deeks, Francisco J Quintana, Daniel C Douek, Adam R Abate, Eli A Boritz
HIV silencing and cell survival signatures in infected T cell reservoirs. Nature 614 (7947) (2023)
Raphael J Landovitz, Hyman Scott, Steven G Deeks
Prevention, treatment and cure of HIV infection. Nature reviews. Microbiology (2023)
Laura P Kincer, Sarah Beth Joseph, Maria M Gilleece, Blake M Hauser, Sabrina Sizemore, Shuntai Zhou, Clara Di Germanio, Henrik Zetterberg, Dietmar Fuchs, Steven G Deeks, Serena Spudich, Magnus Gisslen, Richard W Price, Ronald Swanstrom
Rebound HIV-1 in cerebrospinal fluid after antiviral therapy interruption is mainly clonally amplified R5 T cell-tropic virus. Nature microbiology 8 (2) (2023)
Iain C Clark, Prakriti Mudvari, Shravan Thaploo, Samuel Smith, Mohammad Abu-Laban, Mehdi Hamouda, Marc W Theberge, Sakshi Shah, Sung Hee Ko, Liliana Pérez, Daniel G Bunis, James S Lee, Divya Kilam, Saami Zakaria, Sally Choi, Samuel Darko, Amy R Henry, Michael A Wheeler, Rebecca Hoh, Salwan Butrus, Steven G Deeks, Francisco J Quintana, Daniel C Douek, Adam R Abate, Eli A Boritz
HIV silencing and cell survival signatures in infected T cell reservoirs. Nature (2023)
Iain C Clark, Prakriti Mudvari, Shravan Thaploo, Samuel Smith, Mohammad Abu-Laban, Mehdi Hamouda, Marc W Theberge, Sakshi Shah, Sung Hee Ko, Liliana Pérez, Daniel G Bunis, James S Lee, Divya Kilam, Saami Zakaria, Sally Choi, Samuel Darko, Amy R Henry, Michael A Wheeler, Rebecca Hoh, Salwan Butrus, Steven G Deeks, Francisco J Quintana, Daniel C Douek, Adam R Abate, Eli A Boritz
HIV silencing and cell survival signatures in infected T cell reservoirs. Nature 614 (7947) (2023)
Iain C Clark, Prakriti Mudvari, Shravan Thaploo, Samuel Smith, Mohammad Abu-Laban, Mehdi Hamouda, Marc W Theberge, Sakshi Shah, Sung Hee Ko, Liliana Pérez, Daniel G Bunis, James S Lee, Divya Kilam, Saami Zakaria, Sally Choi, Samuel Darko, Amy R Henry, Michael A Wheeler, Rebecca Hoh, Salwan Butrus, Steven G Deeks, Francisco J Quintana, Daniel C Douek, Adam R Abate, Eli A Boritz
HIV silencing and cell survival signatures in infected T cell reservoirs. Nature (2023)
Iain C Clark, Prakriti Mudvari, Shravan Thaploo, Samuel Smith, Mohammad Abu-Laban, Mehdi Hamouda, Marc W Theberge, Sakshi Shah, Sung Hee Ko, Liliana Pérez, Daniel G Bunis, James S Lee, Divya Kilam, Saami Zakaria, Sally Choi, Samuel Darko, Amy R Henry, Michael A Wheeler, Rebecca Hoh, Salwan Butrus, Steven G Deeks, Francisco J Quintana, Daniel C Douek, Adam R Abate, Eli A Boritz
HIV silencing and cell survival signatures in infected T cell reservoirs. Nature 614 (7947) (2023)
Abbas Mohammadi, Behzad Etemad, Xin Zhang, Yijia Li, Gregory J Bedwell, Radwa Sharaf, Autumn Kittilson, Meghan Melberg, Charles R Crain, Anna K Traunbauer, Colline Wong, Jesse Fajnzylber, Daniel P Worrall, Alex Rosenthal, Hannah Jordan, Nikolaus Jilg, Clarety Kaseke, Francoise Giguel, Xiaodong Lian, Rinki Deo, Elisabeth Gillespie, Rida Chishti, Sara Abrha, Taylor Adams, Abigail Siagian, Dominic Dorazio, Peter L Anderson, Steven G Deeks, Michael M Lederman, Sigal Yawetz, Daniel R Kuritzkes, Mathias D Lichterfeld, Scott F Sieg, Athe Tsibris, Mary N Carrington, Zabrina L Brumme, Jose R Castillo-Mancilla, Alan N Engelman, Gaurav D Gaiha, Jonathan Z Li
Viral and host mediators of non-suppressible HIV-1 viremia. Nature medicine (2023)
Aaron Bodansky, Chung-Yu Wang, Aditi Saxena, Anthea Mitchell, Saki Takahashi, Khamal Anglin, Beatrice Huang, Rebecca Hoh, Scott Lu, Sarah A Goldberg, Justin Romero, Brandon Tran, Raushun Kirtikar, Halle Grebe, Matthew So, Bryan Greenhouse, Matthew S Durstenfeld, Priscilla Y Hsue, Joanna Hellmuth, J Daniel Kelly, Jeffrey N Martin, Mark S Anderson, Steven G Deeks, Timothy J Henrich, Joseph L DeRisi, Michael J Peluso
Autoantigen profiling reveals a shared post-COVID signature in fully recovered and Long COVID patients. medRxiv : the preprint server for health sciences (2023)
Ashok K Dwivedi, David A Siegel, Cassandra Thanh, Rebecca Hoh, Kristen S Hobbs, Tony Pan, Erica A Gibson, Jeffrey N Martin, Frederick Hecht, Christopher Pilcher, Jeffrey Milush, Michael P Busch, Mars Stone, Meei-Li Huang, Claire N Levy, Pavitra Roychoudhury, Florian Hladik, Keith R Jerome, Timothy J Henrich, Steven G Deeks, Sulggi A Lee
Differences in expression of tumor suppressor, innate immune, inflammasome, and potassium/gap junction channel host genes significantly predict viral reservoir size during treated HIV infection. bioRxiv : the preprint server for biology (2023)
Danillo Gardenal Augusto, Lawton D Murdolo, Demetra S M Chatzileontiadou, Joseph J Sabatino, Tasneem Yusufali, Noah D Peyser, Xochitl Butcher, Kerry Kizer, Karoline Guthrie, Victoria Wong Murray, Vivian Pae, Sannidhi Sarvadhavabhatla, Fiona Beltran, Gurjot S Gill, Kara L Lynch, Cassandra Yun, Colin T Maguire, Michael J Peluso, Rebecca Hoh, Timothy J Henrich, Steven G Deeks, Michelle C Davidson, Scott Lu, Sarah A Goldberg, J Daniel Kelly, Jeffrey N Martin, Cynthia A Vierra-Green, Stephen R Spellman, David J Langton, Michael J Dewar-Oldis, Corey Smith, Peter J Barnard, Sulggi A Lee, Gregory M Marcus, Jeffrey E Olgin, Mark J Pletcher, Martin Maiers, Stephanie Gras, Jill A Hollenbach
A common allele of HLA is associated with asymptomatic SARS-CoV-2 infection. Nature (2023)
Laura P Kincer, Sarah Beth Joseph, Maria M Gilleece, Blake M Hauser, Sabrina Sizemore, Shuntai Zhou, Clara Di Germanio, Henrik Zetterberg, Dietmar Fuchs, Steven G Deeks, Serena Spudich, Magnus Gisslen, Richard W Price, Ronald Swanstrom
Rebound HIV-1 in cerebrospinal fluid after antiviral therapy interruption is mainly clonally amplified R5 T cell-tropic virus. Nature microbiology 8 (2) (2023)
Laura P Kincer, Sarah Beth Joseph, Maria M Gilleece, Blake M Hauser, Sabrina Sizemore, Shuntai Zhou, Clara Di Germanio, Henrik Zetterberg, Dietmar Fuchs, Steven G Deeks, Serena Spudich, Magnus Gisslen, Richard W Price, Ronald Swanstrom
Rebound HIV-1 in cerebrospinal fluid after antiviral therapy interruption is mainly clonally amplified R5 T cell-tropic virus. Nature microbiology 8 (2) (2023)
Laura P Kincer, Sarah Beth Joseph, Maria M Gilleece, Blake M Hauser, Sabrina Sizemore, Shuntai Zhou, Clara Di Germanio, Henrik Zetterberg, Dietmar Fuchs, Steven G Deeks, Serena Spudich, Magnus Gisslen, Richard W Price, Ronald Swanstrom
Rebound HIV-1 in cerebrospinal fluid after antiviral therapy interruption is mainly clonally amplified R5 T cell-tropic virus. Nature microbiology 8 (2) (2023)
Paul Ogongo, Anthony Tran, Florence Marzan, David Gingrich, Melissa Krone, Francesca Aweeka, Cecilia S Lindestam Arlehamn, Jeffrey N Martin, Steven G Deeks, Peter W Hunt, Joel D Ernst
M. tuberculosis antigen-responsive IL17 + CD4 T cells are disproportionately spared in ART-suppressed HIV. bioRxiv : the preprint server for biology (2023)
Daniel B Reeves, Charline Bacchus-Souffan, Mark Fitch, Mohamed Abdel-Mohsen, Rebecca Hoh, Haelee Ahn, Mars Stone, Frederick M Hecht, Jeffrey N Martin, Steven G Deeks, Marc K Hellerstein, Joseph M McCune, Joshua T Schiffer, Peter W Hunt
Estimating the contribution of CD4 T cell subset proliferation and differentiation to HIV persistence. Nature communications 14 (1) (2023)
Paul Ogongo, Anthony Tran, Florence Marzan, David Gingrich, Melissa Krone, Francesca Aweeka, Cecilia S Lindestam Arlehamn, Jeffrey N Martin, Steven G Deeks, Peter W Hunt, Joel D Ernst
M. tuberculosis antigen-responsive IL17 + CD4 T cells are disproportionately spared in ART-suppressed HIV. bioRxiv : the preprint server for biology (2023)
Aaron Bodansky, Chung-Yu Wang, Aditi Saxena, Anthea Mitchell, Saki Takahashi, Khamal Anglin, Beatrice Huang, Rebecca Hoh, Scott Lu, Sarah A Goldberg, Justin Romero, Brandon Tran, Raushun Kirtikar, Halle Grebe, Matthew So, Bryan Greenhouse, Matthew S Durstenfeld, Priscilla Y Hsue, Joanna Hellmuth, J Daniel Kelly, Jeffrey N Martin, Mark S Anderson, Steven G Deeks, Timothy J Henrich, Joseph L DeRisi, Michael J Peluso
Autoantigen profiling reveals a shared post-COVID signature in fully recovered and Long COVID patients. medRxiv : the preprint server for health sciences (2023)
Iain C Clark, Prakriti Mudvari, Shravan Thaploo, Samuel Smith, Mohammad Abu-Laban, Mehdi Hamouda, Marc W Theberge, Sakshi Shah, Sung Hee Ko, Liliana Pérez, Daniel G Bunis, James S Lee, Divya Kilam, Saami Zakaria, Sally Choi, Samuel Darko, Amy R Henry, Michael A Wheeler, Rebecca Hoh, Salwan Butrus, Steven G Deeks, Francisco J Quintana, Daniel C Douek, Adam R Abate, Eli A Boritz
HIV silencing and cell survival signatures in infected T cell reservoirs. Nature 614 (7947) (2023)
Matthew S Durstenfeld, Michael J Peluso, Matthew A Spinelli, Danny Li, Rebecca Hoh, Ahmed Chenna, Brandon Yee, John Winslow, Christos J Petroupoulos, Monica Gandhi, Timothy J Henrich, Mandar A Aras, Carlin S Long, Steven G Deeks, Priscilla Y Hsue
Association of SARS-CoV-2 Infection and Cardiopulmonary Long COVID With Exercise Capacity and Chronotropic Incompetence Among People With HIV. Journal of the American Heart Association (2023)
Iain C Clark, Prakriti Mudvari, Shravan Thaploo, Samuel Smith, Mohammad Abu-Laban, Mehdi Hamouda, Marc W Theberge, Sakshi Shah, Sung Hee Ko, Liliana Pérez, Daniel G Bunis, James S Lee, Divya Kilam, Saami Zakaria, Sally Choi, Samuel Darko, Amy R Henry, Michael A Wheeler, Rebecca Hoh, Salwan Butrus, Steven G Deeks, Francisco J Quintana, Daniel C Douek, Adam R Abate, Eli A Boritz
HIV silencing and cell survival signatures in infected T cell reservoirs. Nature (2023)
Iain C Clark, Prakriti Mudvari, Shravan Thaploo, Samuel Smith, Mohammad Abu-Laban, Mehdi Hamouda, Marc W Theberge, Sakshi Shah, Sung Hee Ko, Liliana Pérez, Daniel G Bunis, James S Lee, Divya Kilam, Saami Zakaria, Sally Choi, Samuel Darko, Amy R Henry, Michael A Wheeler, Rebecca Hoh, Salwan Butrus, Steven G Deeks, Francisco J Quintana, Daniel C Douek, Adam R Abate, Eli A Boritz
HIV silencing and cell survival signatures in infected T cell reservoirs. Nature (2023)
Iain C Clark, Prakriti Mudvari, Shravan Thaploo, Samuel Smith, Mohammad Abu-Laban, Mehdi Hamouda, Marc W Theberge, Sakshi Shah, Sung Hee Ko, Liliana Pérez, Daniel G Bunis, James S Lee, Divya Kilam, Saami Zakaria, Sally Choi, Samuel Darko, Amy R Henry, Michael A Wheeler, Rebecca Hoh, Salwan Butrus, Steven G Deeks, Francisco J Quintana, Daniel C Douek, Adam R Abate, Eli A Boritz
HIV silencing and cell survival signatures in infected T cell reservoirs. Nature 614 (7947) (2023)
Iain C Clark, Prakriti Mudvari, Shravan Thaploo, Samuel Smith, Mohammad Abu-Laban, Mehdi Hamouda, Marc W Theberge, Sakshi Shah, Sung Hee Ko, Liliana Pérez, Daniel G Bunis, James S Lee, Divya Kilam, Saami Zakaria, Sally Choi, Samuel Darko, Amy R Henry, Michael A Wheeler, Rebecca Hoh, Salwan Butrus, Steven G Deeks, Francisco J Quintana, Daniel C Douek, Adam R Abate, Eli A Boritz
HIV silencing and cell survival signatures in infected T cell reservoirs. Nature (2023)
Akif Altinbas, Jacinta A Holmes, Shadi Salloum, Anna Lidofsky, Nadia Alatrakchi, Peter W Hunt, Steven G Deeks, Kara W Chew, Georg Lauer, Annie J Kruger, Wenyu Lin, Raymond T Chung
LOXL-2 and TNC-C are markers of liver fibrogenesis in HCV/HIV-, HIV- and HCV-infected patients. Biomarkers in medicine 16 (11) (2022)
Denis R Beckford-Vera, Robert Richard Flavell, Youngho Seo, Enrique Martinez-Ortiz, Maya Aslam, Cassandra Thanh, Emily Fehrman, Marion Pardons, Shreya Kumar, Amelia N Deitchman, Vahid Ravanfar, Brailee Schulte, I-Wei Katherine Wu, Tony Pan, Jacqueline D Reeves, Christopher C Nixon, Nikita S Iyer, Leonel Torres, Sadie E Munter, Tony Hyunh, Christos J Petroupoulos, Rebecca Hoh, Benjamin L Franc, Lucio Gama, Richard A Koup, John R Mascola, Nicolas Chomont, Steven G Deeks, Henry F VanBrocklin, Timothy J Henrich
First-in-human immunoPET imaging of HIV-1 infection using 89 Zr-labeled VRC01 broadly neutralizing antibody. Nature communications 13 (1) (2022)
Thomas S Uldrick, Scott V Adams, Remi Fromentin, Michael Roche, Steven P Fling, Priscila H Gonçalves, Kathryn Lurain, Ramya Ramaswami, Chia-Ching Jackie Wang, Robert J Gorelick, Jorden L Welker, Liz O'Donoghue, Harleen Choudhary, Jeffrey D Lifson, Thomas A Rasmussen, Ajantha Rhodes, Carolin Tumpach, Robert Yarchoan, Frank Maldarelli, Martin A Cheever, Rafick-Pierre Sekaly, Nicolas Chomont, Steven G Deeks, Sharon R Lewin
Pembrolizumab induces HIV latency reversal in people living with HIV and cancer on antiretroviral therapy. Science translational medicine 14 (629) (2022)
Matthew S Durstenfeld, Michael J Peluso, Punita Kaveti, Christopher Hill, Danny Li, Erica Sander, Shreya Swaminathan, Victor M Arechiga, Kaiwen Sun, Yifei Ma, Victor Zepeda, Scott Lu, Sarah A Goldberg, Rebecca Hoh, Ahmed Chenna, Brandon C Yee, John W Winslow, Christos J Petroupoulos, Sithu Win, J Daniel Kelly, David V Glidden, Timothy J Henrich, Jeffrey N Martin, Yoo Jin Lee, Mandar A Aras, Carlin S Long, Donald J Grandis, Steven G Deeks, Priscilla Y Hsue
Inflammation during early post-acute COVID-19 is associated with reduced exercise capacity and Long COVID symptoms after 1 year. medRxiv : the preprint server for health sciences (2022)
Matthew S Durstenfeld, Kaiwen Sun, Peggy M Tahir, Michael J Peluso, Steven G Deeks, Mandar A Aras, Donald J Grandis, Carlin S Long, Alexis Beatty, Priscilla Y Hsue
Cardiopulmonary exercise testing to evaluate post-acute sequelae of COVID-19 ("Long COVID"): a systematic review and meta-analysis. medRxiv : the preprint server for health sciences (2022)
Jeffrey A Tomalka, Mehul S Suthar, Steven G Deeks, Rafick-Pierre Sekaly
Fighting the SARS-CoV-2 pandemic requires a global approach to understanding the heterogeneity of vaccine responses. Nature immunology 23 (3) (2022)
Michael J Peluso, Hannah M Sans, Carrie A Forman, Alyssa N Nylander, Hsi-En Ho, Scott Lu, Sarah A Goldberg, Rebecca Hoh, Viva Tai, Sadie E Munter, Ahmed Chenna, Brandon C Yee, John W Winslow, Christos J Petropoulos, Jeffrey N Martin, J D Kelly, Matthew S Durstenfeld, Priscilla Y Hsue, Peter W Hunt, Meredith Greene, Felicia C Chow, Joanna Hellmuth, Timothy J Henrich, David V Glidden, Steven G Deeks
Plasma Markers of Neurologic Injury and Inflammation in People With Self-Reported Neurologic Postacute Sequelae of SARS-CoV-2 Infection. Neurology(R) neuroimmunology & neuroinflammation 9 (5) (2022)
Devi SenGupta, Cynthia Brinson, Edwin DeJesus, Anthony Mills, Peter Shalit, Susan Guo, Yanhui Cai, Jeffrey J Wallin, Liao Zhang, Rita Humeniuk, Rebecca Begley, Romas Geleziunas, John W Mellors, Terri Wrin, Norman Jones, Jeffrey Milush, April L Ferre, Barbara L Shacklett, Gregory M Laird, Brian Moldt, Elena Vendrame, Diana M Brainard, Moti Ramgopal, Steven G Deeks
The TLR7 agonist vesatolimod induced a modest delay in viral rebound in HIV controllers after cessation of antiretroviral therapy. Science translational medicine 13 (599) (2021)
Michael J Peluso, J Daniel Kelly, Scott Lu, Sarah A Goldberg, Michelle C Davidson, Sujata Mathur, Matthew S Durstenfeld, Matthew A Spinelli, Rebecca Hoh, Viva Tai, Emily A Fehrman, Leonel Torres, Yanel Hernandez, Meghann C Williams, Mireya I Arreguin, Jennifer A Bautista, Lynn H Ngo, Monika Deswal, Sadie E Munter, Enrique O Martinez, Khamal A Anglin, Mariela D Romero, Jacqueline Tavs, Paulina R Rugart, Jessica Y Chen, Hannah M Sans, Victoria W Murray, Payton K Ellis, Kevin C Donohue, Jonathan A Massachi, Jacob O Weiss, Irum Mehdi, Jesus Pineda-Ramirez, Alex F Tang, Megan Wenger, Melissa Assenzio, Yan Yuan, Melissa Krone, Rachel L Rutishauser, Isabel Rodriguez-Barraquer, Bryan Greenhouse, John A Sauceda, Monica Gandhi, Priscilla Y Hsue, Timothy J Henrich, Steven G Deeks, Jeffrey N Martin
Rapid implementation of a cohort for the study of post-acute sequelae of SARS-CoV-2 infection/COVID-19. medRxiv : the preprint server for health sciences (2021)
Shaheed Abdulhaqq, Abigail B Ventura, Jason S Reed, Arman A Bashirova, Katherine B Bateman, Eric McDonald, Helen L Wu, Justin M Greene, John B Schell, David W Morrow, Karin Wisskirchen, Jeffrey N Martin, Steven G Deeks, Mary N Carrington, Ulrike Protzer, Klaus Früh, Scott G Hansen, Louis J Picker, Jonah B Sacha, Benjamin N Bimber
Identification and Characterization of Antigen-Specific CD8+ T Cells Using Surface-Trapped TNF-α and Single-Cell Sequencing. Journal of immunology (Baltimore, Md. : 1950) (2021)
Saki Takahashi, Michael J Peluso, Jill Hakim, Keirstinne Turcios, Owen Janson, Isobel Routledge, Michael P Busch, Rebecca Hoh, Viva Tai, J Daniel Kelly, Jeffrey N Martin, Steven G Deeks, Timothy J Henrich, Bryan Greenhouse, Isabel Rodriguez-Barraquer
SARS-CoV-2 serology across scales: a framework for unbiased seroprevalence estimation incorporating antibody kinetics and epidemic recency. medRxiv : the preprint server for health sciences (2021)
Michael J Peluso, Saki Takahashi, Jill Hakim, J Daniel Kelly, Leonel Torres, Nikita S Iyer, Keirstinne Turcios, Owen Janson, Sadie E Munter, Cassandra Thanh, Joanna Donatelli, Christopher C Nixon, Rebecca Hoh, Viva Tai, Emily A Fehrman, Yanel Hernandez, Matthew A Spinelli, Monica Gandhi, Mary-Ann Palafox, Ana S Vallari, Mary A Rodgers, John Prostko, John Hackett, Lan Trinh, Terri Wrin, Christos J Petroupoulos, Charles Y Chiu, Phillip J Norris, Clara DiGermanio, Mars Stone, Michael P Busch, Susanna K Elledge, Xin X Zhou, James A Wells, Albert Shu, Theodore W Kurtz, John E Pak, Wesley Wu, Peter Denis Burbelo, Jeffrey I Cohen, Rachel L Rutishauser, Jeffrey N Martin, Steven G Deeks, Timothy J Henrich, Isabel Rodriguez-Barraquer, Bryan Greenhouse
SARS-CoV-2 antibody magnitude and detectability are driven by disease severity, timing, and assay. Science advances 7 (31) (2021)
Xiaodong Lian, Ce Gao, Xiaoming Sun, Chenyang Jiang, Kevin B Einkauf, Kyra W Seiger, Joshua M Chevalier, Yuko Yuki, Maureen P Martin, Rebecca Hoh, Michael J Peluso, Mary N Carrington, Ezequiel Ruiz-Mateos, Steven G Deeks, Eric D Rosenberg, Bruce D Walker, Mathias D Lichterfeld, Xu G Yu
Signatures of immune selection in intact and defective proviruses distinguish HIV-1 elite controllers. Science translational medicine 13 (624) (2021)
Charline Bacchus-Souffan, Mark D Fitch, Jori Symons, Mohamed Abdel-Mohsen, Daniel B Reeves, Rebecca Hoh, Mars Stone, Joseph Hiatt, Peggy Kim, Abha Chopra, Haelee Ahn, Vanessa A York, Daniel L Cameron, Frederick M Hecht, Jeffrey N Martin, Steven A Yukl, Simon A Mallal, Paul U Cameron, Steven G Deeks, Joshua T Schiffer, Sharon R Lewin, Marc K Hellerstein, Joseph M McCune, Peter W Hunt
Relationship between CD4 T cell turnover, cellular differentiation and HIV persistence during ART. PLoS pathogens 17 (1) (2021)
Janie R Byrum, Eric Waltari, Owen Janson, Syuan-Ming Guo, Jenny Folkesson, Bryant B Chhun, Joanna Vinden, Ivan E Ivanov, Marcus L Forst, Hongquan Li, Adam G Larson, Wesley Wu, Cristina M Tato, Krista M McCutcheon, Michael J Peluso, Timothy J Henrich, Steven G Deeks, Manu Prakash, Bryan Greenhouse, John E Pak, Shalin B Mehta
multiSero: open multiplex-ELISA platform for analyzing antibody responses to SARS-CoV-2 infection. medRxiv : the preprint server for health sciences (2021)
Valerie F Boltz, Cristina Ceriani, Jason W Rausch, Wei Shao, Michael J Bale, Brandon F Keele, Rebecca Hoh, Jeffrey M Milush, Steven G Deeks, Frank Maldarelli, Mary F Kearney, John M Coffin
CpG Methylation Profiles of HIV-1 Pro-Viral DNA in Individuals on ART. Viruses 13 (5) (2021)
Runxia Liu, Yang-Hui Jimmy Yeh, Ales Varabyou, Jack A Collora, Scott Sherrill-Mix, C Conover Talbot, Sameet Mehta, Kristen Albrecht, Haiping Hao, Hao Zhang, Ross A Pollack, Subul A Beg, Rachela M Calvi, Jianfei Hu, Christine M Durand, Richard F Ambinder, Rebecca Hoh, Steven G Deeks, Jennifer Chiarella, Serena Spudich, Daniel C Douek, Frederic D Bushman, Mihaela Pertea, Ya-Chi Ho
Single-cell transcriptional landscapes reveal HIV-1-driven aberrant host gene transcription as a potential therapeutic target. Science translational medicine 12 (543) (2021)
Anjali B Thakkar, Yifei Ma, Mark Dela Cruz, Yuaner Wu, Victor Arechiga, Shreya Swaminathan, Peter Ganz, Alan H B Wu, Rebecca Scherzer, Steven G Deeks, Priscilla Y Hsue
Effect of HIV-1 Infection on Angiopoietin 1 and 2 Levels and Measures of Microvascular and Macrovascular Endothelial Dysfunction. Journal of the American Heart Association 10 (22) (2021)
Feng Hsiao, Julie Frouard, Andrea Gramatica, Guorui Xie, Sushama Telwatte, Guinevere Q Lee, Pavitra Roychoudhury, Roland Schwarzer, Xiaoyu Luo, Steven A Yukl, Sulggi Lee, Rebecca Hoh, Steven G Deeks, R Brad Jones, Marielle Cavrois, Warner C Greene, Nadia R Roan
Tissue memory CD4+ T cells expressing IL-7 receptor-alpha (CD127) preferentially support latent HIV-1 infection. PLoS pathogens 16 (4) (2020)
Albert Vallejo-Gracia, Irene P Chen, Rosalba Perrone, Emilie Besnard, Daniela Boehm, Emilie Battivelli, Tugsan Tezil, Karsten Krey, Kyle A Raymond, Philip A Hull, Marius Walter, Ireneusz Habrylo, Andrew Cruz, Steven G Deeks, Satish Pillai, Eric Verdin, Melanie M Ott
FOXO1 promotes HIV latency by suppressing ER stress in T cells. Nature microbiology 5 (9) (2020)
Son Nguyen, Claire Deleage, Samuel W Darko, Amy Ransier, Duc P Truong, Divyansh Agarwal, Alberto Sada Japp, Vincent H Wu, Leticia Kuri-Cervantes, Mohamed Abdel-Mohsen, Perla Mariana Del Río-Estrada, Yuria Ablanedo-Terrazas, Emma Gostick, James A Hoxie, Nancy R Zhang, Ali Naji, Gustavo Reyes-Terán, Jacob D Estes, David A Price, Daniel C Douek, Steven G Deeks, Marcus Buggert, Michael R Betts
Elite control of HIV is associated with distinct functional and transcriptional signatures in lymphoid tissue CD8+ T cells. Science translational medicine 11 (523) (2020)
Kyungyoon J Kwon, Andrew E Timmons, Srona Sengupta, Francesco R Simonetti, Hao Zhang, Rebecca Hoh, Steven G Deeks, Janet M Siliciano, Robert F Siliciano
Different human resting memory CD4+ T cell subsets show similar low inducibility of latent HIV-1 proviruses. Science translational medicine 12 (528) (2020)
Chenyang Jiang, Xiaodong Lian, Ce Gao, Xiaoming Sun, Kevin B Einkauf, Joshua M Chevalier, Samantha M Y Chen, Stephane Hua, Ben Rhee, Kaylee Chang, Jane E Blackmer, Matthew Osborn, Michael J Peluso, Rebecca Hoh, Ma Somsouk, Jeffrey Milush, Lynn N Bertagnolli, Sarah E Sweet, Joseph A Varriale, Peter D Burbelo, Tae-Wook Chun, Gregory M Laird, Erik Serrao, Alan N Engelman, Mary N Carrington, Robert F Siliciano, Janet M Siliciano, Steven G Deeks, Bruce D Walker, Mathias Lichterfeld, Xu G Yu
Distinct viral reservoirs in individuals with spontaneous control of HIV-1. Nature 585 (7824) (2020)
Jason Neidleman, Xiaoyu Luo, Julie Frouard, Guorui Xie, Feng Hsiao, Tongcui Ma, Vincent Morcilla, Ashley Lee, Sushama Telwatte, Reuben Thomas, Whitney Tamaki, Benjamin D Wheeler, Rebecca Hoh, Ma Somsouk, Poonam Vohra, Jeffrey Milush, Katherine Sholtis James, Nancie M Archin, Peter W Hunt, Steven G Deeks, Steven A Yukl, Sarah Palmer, Warner C Greene, Nadia R Roan
Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir. eLife 9 (2020)
Hossam A Abdelsamed, Caitlin C Zebley, Hai Nguyen, Rachel L Rutishauser, Yiping Fan, Hazem E Ghoneim, Jeremy Chase Crawford, Francesca Alfei, Shanta Alli, Susan Pereira Ribeiro, Ashley H Castellaw, Maureen A McGargill, Hongjian Jin, Shannon K Boi, Cate Speake, Elisavet Serti, Laurence A Turka, Michael E Busch, Mars Stone, Steven G Deeks, Rafick-Pierre Sekaly, Dietmar Zehn, Eddie A James, Gerald T Nepom, Benjamin A Youngblood
Beta cell-specific CD8+ T cells maintain stem cell memory-associated epigenetic programs during type 1 diabetes. Nature immunology 21 (5) (2020)
Jishnu Das, Anush Devadhasan, Caitlyn H Linde, Tom Broge, Jessica Sassic, Max Mangano, Sean O'Keefe, Todd J Suscovich, Hendrik Streeck, Alivelu Irrinki, Christopher W Pohlmeyer, Gundula Min-Oo, Shu Lin, Joshua A Weiner, Thomas Cihlar, Margaret E Ackerman, Boris Julg, Steven G Deeks, Douglas A Lauffenburger, Galit Alter
Mining for humoral correlates of HIV control and latent reservoir size. PLoS pathogens 16 (10) (2020)
Yetao Wang, Lawrence Lifshitz, Kyle J Gellatly, Carol L Vinton, Kathleen Busman-Sahay, Sean McCauley, Pranitha Vangala, Kyusik Kim, Alan Derr, Smita Jaiswal, Alper Kucukural, Patrick McDonel, Peter W Hunt, Thomas Greenough, JeanMarie Houghton, Ma Somsouk, Jacob D Estes, Jason M Brenchley, Manuel Garber, Steven G Deeks, Jeremy Luban
HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells. Nature immunology 21 (3) (2020)
Rémi Fromentin, Sandrina DaFonseca, Cecilia T Costiniuk, Mohamed El-Far, Francesco Andrea Procopio, Frederick M Hecht, Rebecca Hoh, Steven G Deeks, Daria J Hazuda, Sharon R Lewin, Jean-Pierre Routy, Rafick-Pierre Sékaly, Nicolas Chomont
PD-1 blockade potentiates HIV latency reversal ex vivo in CD4+ T cells from ART-suppressed individuals. Nature communications 10 (1) (2019)
Smita Kulkarni, Alexandra Lied, Viraj Kulkarni, Marijana Rucevic, Maureen P Martin, Victoria Walker-Sperling, Stephen K Anderson, Rodger Ewy, Sukhvinder Singh, Hoang Nguyen, Paul J McLaren, Mathias Viard, Vivek Naranbhai, Chengcheng Zou, Zhansong Lin, Hiroyuki Gatanaga, Shinichi Oka, Masafumi Takiguchi, Chloe L Thio, Joseph Margolick, Gregory D Kirk, James J Goedert, W Keith Hoots, Steven G Deeks, David W Haas, Nelson Michael, Bruce D Walker, Sylvie Le Gall, Fatema Z Chowdhury, Xu G Yu, Mary N Carrington
CCR5AS lncRNA variation differentially regulates CCR5, influencing HIV disease outcome. Nature immunology 20 (7) (2019)
Elena Gonzalo-Gil, Patrick B Rapuano, Uchenna Ikediobi, Rebecca Leibowitz, Sameet Mehta, Ayse K Coskun, J Zachary Porterfield, Teagan D Lampkin, Vincent C Marconi, David Rimland, Bruce D Walker, Steven G Deeks, Richard E Sutton
Transcriptional down-regulation of ccr5 in a subset of HIV+ controllers and their family members. eLife 8 (2019)
Zichong Li, Jun Wu, Leonard Chavez, Rebecca Hoh, Steven G Deeks, Satish K Pillai, Qiang Zhou
Reiterative Enrichment and Authentication of CRISPRi Targets (REACT) identifies the proteasome as a key contributor to HIV-1 latency. PLoS pathogens 15 (1) (2019)
Elizabeth R Wonderlich, Krupa Subramanian, Bryan Cox, Ann Wiegand, Carol Lackman-Smith, Michael J Bale, Mars Stone, Rebecca Hoh, Mary F Kearney, Frank Maldarelli, Steven G Deeks, Michael P Busch, Roger G Ptak, Deanna A Kulpa
Effector memory differentiation increases detection of replication-competent HIV-l in resting CD4+ T cells from virally suppressed individuals. PLoS pathogens 15 (10) (2019)
Marcus Buggert, Son Nguyen, Gonzalo Salgado-Montes de Oca, Bertram Bengsch, Samuel Darko, Amy Ransier, Emily R Roberts, Daniel Del Alcazar, Irene Bukh Brody, Laura A Vella, Lalit K Beura, Sathi Wijeyesinghe, Ramin Sedaghat Herati, Perla Mariana Del Río-Estrada, Yuria Ablanedo-Terrazas, Leticia Kuri-Cervantes, Alberto Sada Japp, Sasikanth Manne, Shant Vartanian, Austin Huffman, Johan K Sandberg, Emma Gostick, Gregory Nadolski, Guido Silvestri, David H Canaday, David A Price, Constantinos Petrovas, Laura F Su, Golnaz Vahedi, Yoav Dori, Ian Frank, Maxim G Itkin, E John Wherry, Steven G Deeks, Ali Naji, Gustavo Reyes-Terán, David Masopust, Daniel C Douek, Michael R Betts
Identification and characterization of HIV-specific resident memory CD8+ T cells in human lymphoid tissue. Science immunology 3 (24) (2019)
Brenna E Kiniry, Peter W Hunt, Frederick M Hecht, Ma Somsouk, Steven G Deeks, Barbara L Shacklett
Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection. Journal of immunology (Baltimore, Md. : 1950) 200 (5) (2018)
Louise E Hogan, Joshua J Vásquez, Kristen S Hobbs, Emily B Hanhauser, Brandon Aguilar-Rodriguez, Rajaa Hussien, Cassandra Thanh, Erica A Gibson, Alexander B Carvidi, Louis C B Smith, Shahzada Khan, Martin Trapecar, Shomyseh Sanjabi, Ma Somsouk, Cheryl A Stoddart, Daniel R Kuritzkes, Steven G Deeks, Timothy J Henrich
Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30. PLoS pathogens 14 (2) (2018)
Philip J R Goulder, Steven G Deeks
HIV control: Is getting there the same as staying there? PLoS pathogens 14 (11) (2018)
Veron Ramsuran, Vivek Naranbhai, Amir Horowitz, Ying Qi, Maureen P Martin, Yuko Yuki, Xiaojiang Gao, Victoria E K Walker-Sperling, Gregory Q Del Prete, Douglas K Schneider, Jeffrey D Lifson, Jacques Fellay, Steven G Deeks, Jeffrey N Martin, James J Goedert, Steven M Wolinsky, Nelson L Michael, Gregory D Kirk, Susan Buchbinder, David W Haas, Thumbi Ndung'u, Philip J R Goulder, Peter Parham, Bruce D Walker, Jonathan M Carlson, Mary N Carrington
Elevated HLA-A expression impairs HIV control through inhibition of NKG2A-expressing cells. Science (New York, N.Y.) 359 (6371) (2018)
Emilie Battivelli, Matthew S Dahabieh, Mohamed Abdel-Mohsen, J Peter Svensson, Israel Tojal Da Silva, Lillian B Cohn, Andrea Gramatica, Steven G Deeks, Warner C Greene, Satish K Pillai, Eric Verdin
Distinct chromatin functional states correlate with HIV latency reactivation in infected primary CD4+ T cells. eLife 7 (2018)
Avantika S Chitre, Michael G Kattah, Yenny Y Rosli, Montha Pao, Monika Deswal, Steven G Deeks, Peter W Hunt, Mohamed Abdel-Mohsen, Luis J Montaner, Charles C Kim, Averil Ma, Ma Somsouk, Joseph M McCune
A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function. PLoS pathogens 14 (3) (2018)
Sushama Telwatte, Sulggi A Lee, Ma Somsouk, Hiroyu Hatano, Christopher Baker, Philipp Kaiser, Peggy Kim, Tsui-Hua Chen, Jeffrey Milush, Peter W Hunt, Steven G Deeks, Joseph K Wong, Steven A Yukl
Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency. PLoS pathogens 14 (11) (2018)
Marcus Buggert, Son Nguyen, Laura M McLane, Maria Steblyanko, Nadia Anikeeva, Dominic Paquin-Proulx, Perla Mariana Del Río-Estrada, Yuria Ablanedo-Terrazas, Kajsa Noyan, Morgan A Reuter, Korey Demers, Johan K Sandberg, Michael A Eller, Hendrik Streeck, Marianne Jansson, Piotr Nowak, Anders Sönnerborg, David H Canaday, Ali Naji, E John Wherry, Merlin L Robb, Steven G Deeks, Gustavo Reyes-Teran, Yuri Sykulev, Annika C Karlsson, Michael R Betts
Limited immune surveillance in lymphoid tissue by cytolytic CD4+ T cells during health and HIV disease. PLoS pathogens 14 (4) (2018)
Steven G Deeks, Sharon R Lewin, Linda-Gail Bekker
The end of HIV: Still a very long way to go, but progress continues. PLoS medicine 14 (11) (2017)
Timothy J Henrich, Hiroyu Hatano, Oliver Bacon, Louise E Hogan, Rachel Rutishauser, Alison L Hill, Mary F Kearney, Elizabeth M Anderson, Susan P Buchbinder, Stephanie E Cohen, Mohamed Abdel-Mohsen, Christopher W Pohlmeyer, Remi Fromentin, Rebecca Hoh, Albert Y Liu, Joseph M McCune, Jonathan Spindler, Kelly A Metcalf Pate, Kristen S Hobbs, Cassandra Thanh, Erica A Gibson, Daniel R Kuritzkes, Robert F Siliciano, Richard W Price, Douglas D Richman, Nicolas Chomont, Janet M Siliciano, John W Mellors, Steven A Yukl, Joel N Blankson, Teri Liegler, Steven G Deeks
HIV-1 persistence following extremely early initiation of antiretroviral therapy (ART) during acute HIV-1 infection: An observational study. PLoS medicine 14 (11) (2017)
Katherine M Bruner, Alexandra J Murray, Ross A Pollack, Mary G Soliman, Sarah B Laskey, Adam A Capoferri, Jun Lai, Matthew C Strain, Steven M Lada, Rebecca Hoh, Ya-Chi Ho, Douglas D Richman, Steven G Deeks, Janet D Siliciano, Robert F Siliciano
Defective proviruses rapidly accumulate during acute HIV-1 infection. Nature medicine 22 (9) (2016)
Steven G Deeks, Sharon R Lewin, Anna Laura Ross, Jintanat Ananworanich, Monsef Benkirane, Paula Cannon, Nicolas Chomont, Daniel Douek, Jeffrey D Lifson, Ying-Ru Lo, Daniel Kuritzkes, David M Margolis, John Mellors, Deborah Persaud, Joseph D Tucker, Françoise Barre-Sinoussi, null null, Galit Alter, Judith Auerbach, Brigitte Autran, Dan H Barouch, Georg Behrens, Marina Cavazzana, Zhiwei Chen, Éric A Cohen, Giulio Maria Corbelli, Serge Eholié, Nir Eyal, Sarah Fidler, Laurindo Garcia, Cynthia Grossman, Gail Henderson, Timothy J Henrich, Richard Jefferys, Hans-Peter Kiem, Joseph McCune, Keymanthri Moodley, Peter A Newman, Monique Nijhuis, Moses Supercharger Nsubuga, Melanie Ott, Sarah Palmer, Douglas Richman, Asier Saez-Cirion, Matthew Sharp, Janet Siliciano, Guido Silvestri, Jerome Singh, Bruno Spire, Jeffrey Taylor, Martin Tolstrup, Susana Valente, Jan van Lunzen, Rochelle Walensky, Ira Wilson, Jerome Zack
International AIDS Society global scientific strategy: towards an HIV cure 2016. Nature medicine 22 (8) (2016)
Leslie R Cockerham, Steven G Deeks
Biomarker reveals HIV's hidden reservoir. eLife 3 (2014)

Steven G Deeks.css-eqlu8i{font-size:small;padding-left:4px;} (Steve G Deeks, Steven Deeks)

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Steven G Deeks (Steve G Deeks, Steven Deeks)