Rory Johnson

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 20

Top Venues

Nucleic acids research

Nature reviews. Genetics

Genome research

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Bhavya Dhaka, Marc Zimmerli, Daniel Hanhart, Mario B Moser, Hugo Guillen-Ramirez, Sanat Mishra, Roberta Esposito, Taisia Polidori, Maro Widmer, Raquel García-Pérez, Marianna Kruithof-de Julio, Dmitri D Pervouchine, Marta Melé, Panagiotis Chouvardas, Rory Johnson
Functional identification of cis-regulatory long noncoding RNAs at controlled false discovery rates. Nucleic acids research (2024)
Bhavya Dhaka, Marc Zimmerli, Daniel Hanhart, Mario B Moser, Hugo Guillen-Ramirez, Sanat Mishra, Roberta Esposito, Taisia Polidori, Maro Widmer, Raquel García-Pérez, Marianna Kruithof-de Julio, Dmitri D Pervouchine, Marta Melé, Panagiotis Chouvardas, Rory Johnson
Functional identification of cis-regulatory long noncoding RNAs at controlled false discovery rates. Nucleic acids research 52 (6) (2024)
Michela Coan, Simon Haefliger, Samir Ounzain, Rory Johnson
Targeting and engineering long non-coding RNAs for cancer therapy. Nature reviews. Genetics (2024)
Bhavya Dhaka, Marc Zimmerli, Daniel Hanhart, Mario B Moser, Hugo Guillen-Ramirez, Sanat Mishra, Roberta Esposito, Taisia Polidori, Maro Widmer, Raquel García-Pérez, Marianna Kruithof-de Julio, Dmitri D Pervouchine, Marta Melé, Panagiotis Chouvardas, Rory Johnson
Functional identification of cis-regulatory long noncoding RNAs at controlled false discovery rates. Nucleic acids research 52 (6) (2024)
Bhavya Dhaka, Marc Zimmerli, Daniel Hanhart, Mario B Moser, Hugo Guillen-Ramirez, Sanat Mishra, Roberta Esposito, Taisia Polidori, Maro Widmer, Raquel García-Pérez, Marianna Kruithof-de Julio, Dmitri D Pervouchine, Marta Melé, Panagiotis Chouvardas, Rory Johnson
Functional identification of cis-regulatory long noncoding RNAs at controlled false discovery rates. Nucleic acids research 52 (6) (2024)
Michela Coan, Simon Haefliger, Samir Ounzain, Rory Johnson
Targeting and engineering long non-coding RNAs for cancer therapy. Nature reviews. Genetics 25 (8) (2024)
Bhavya Dhaka, Marc Zimmerli, Daniel Hanhart, Mario B Moser, Hugo Guillen-Ramirez, Sanat Mishra, Roberta Esposito, Taisia Polidori, Maro Widmer, Raquel García-Pérez, Marianna Kruithof-de Julio, Dmitri D Pervouchine, Marta Melé, Panagiotis Chouvardas, Rory Johnson
Functional identification of cis-regulatory long noncoding RNAs at controlled false discovery rates. Nucleic acids research (2024)
Roberta Esposito, Andrés Lanzós, Tina Uroda, Sunandini Ramnarayanan, Isabel Büchi, Taisia Polidori, Hugo Guillen-Ramirez, Ante Mihaljevic, Bernard Mefi Merlin, Lia Mela, Eugenio Zoni, Lusine Hovhannisyan, Finn McCluggage, Matúš Medo, Giulia Basile, Dominik F Meise, Sandra Zwyssig, Corina Wenger, Kyriakos Schwarz, Adrienne Vancura, Núria Bosch-Guiteras, Alvaro Andrades, Ai Ming Tham, Michaela Roemmele, Pedro P Medina, Adrian Franz Ochsenbein, Carsten Riether, Marianna Kruithof de Julio, Yitzhak Zimmer, Michaela Medová, Deborah M Stroka, Archa Fox, Rory Johnson
Author Correction: Tumour mutations in long noncoding RNAs enhance cell fitness. Nature communications 14 (1) (2023)
Paulo Amaral, Silvia Carbonell-Sala, Francisco M De La Vega, Tiago Faial, Adam Frankish, Thomas Gingeras, Roderic Guigo, Jennifer L Harrow, Artemis G Hatzigeorgiou, Rory Johnson, Terence D Murphy, Mihaela Pertea, Kim D Pruitt, Shashikant Pujar, Hazuki Takahashi, Igor Ulitsky, Ales Varabyou, Christine A Wells, Mark Yandell, Piero Carnici, Steven L Salzberg
The status of the human gene catalogue. Nature 622 (7981) (2023)
Roberta Esposito, Andrés Lanzós, Tina Uroda, Sunandini Ramnarayanan, Isabel Büchi, Taisia Polidori, Hugo Guillen-Ramirez, Ante Mihaljevic, Bernard Mefi Merlin, Lia Mela, Eugenio Zoni, Lusine Hovhannisyan, Finn McCluggage, Matúš Medo, Giulia Basile, Dominik F Meise, Sandra Zwyssig, Corina Wenger, Kyriakos Schwarz, Adrienne Vancura, Núria Bosch-Guiteras, Alvaro Andrades, Ai Ming Tham, Michaela Roemmele, Adrian Franz Ochsenbein, Carsten Riether, Marianna Kruithof de Julio, Yitzhak Zimmer, Michaela Medová, Deborah M Stroka, Archa Fox, Rory Johnson
Tumour mutations in long noncoding RNAs enhance cell fitness. Nature communications 14 (1) (2023)
Adam Frankish, Sílvia Carbonell-Sala, Mark E Diekhans, Irwin Jungreis, Jane E Loveland, Jonathan M Mudge, Cristina Sisu, James C Wright, Carme Arnan, If Barnes, Abhimanyu Banerjee, Ruth Bennett, Andrew Berry, Alexandra Bignell, Carles Boix, Ferriol Calvet, Daniel Cerdán-Vélez, Fiona Cunningham, Claire Davidson, Sarah Donaldson, Cagatay Dursun, Reham Fatima, Stefano Giorgetti, Carlos Garcıa Giron, Jose Manuel Gonzalez, Matthew Hardy, Peter W Harrison, Thibaut Hourlier, Zoe Hollis, Toby Hunt, Benjamin James, Yunzhe Jiang, Rory Johnson, Mike Kay, Julien Lagarde, Fergal J Martin, Laura Martínez Gómez, Surag Nair, Pengyu Ni, Fernando Pozo, Vivek Ramalingam, Magali Ruffier, Bianca M Schmitt, Jacob M Schreiber, Emily Steed, Marie-Marthe Suner, Dulika Sumathipala, Irina Sycheva, Barbara Uszczynska-Ratajczak, Elizabeth Wass, Yucheng T Yang, Andrew D Yates, Zahoor Zafrulla, Jyoti S Choudhary, Mark Gerstein, Roderic Guigo, Tim J P Hubbard, Manolis Kellis, Anshul Kundaje, Benedict Paten, Michael Liam Tress, Paul Flicek
GENCODE: reference annotation for the human and mouse genomes in 2023. Nucleic acids research (2022)
Adrienne Vancura, Andrés Lanzós, Núria Bosch-Guiteras, Mònica Torres Esteban, Alejandro H Gutierrez, Simon Haefliger, Rory Johnson
Cancer LncRNA Census 2 (CLC2): an enhanced resource reveals clinical features of cancer lncRNAs. NAR cancer 3 (2) (2021)
Carlos Pulido-Quetglas, Rory Johnson
Designing libraries for pooled CRISPR functional screens of long noncoding RNAs. Mammalian genome : official journal of the International Mammalian Genome Society (2021)
Núria Bosch-Guiteras, Tina Uroda, Hugo A Guillen-Ramirez, Rahel Riedo, Amiq Gazdhar, Roberta Esposito, Carlos Pulido-Quetglas, Yitzhak Zimmer, Michaela Medová, Rory Johnson
Enhancing CRISPR deletion via pharmacological delay of DNA-PKcs. Genome research 31 (3) (2021)
Barbara Uszczynska-Ratajczak, Julien Lagarde, Adam Frankish, Roderic Guigó, Rory Johnson
Towards a complete map of the human long non-coding RNA transcriptome. Nature reviews. Genetics 19 (9) (2019)
Joana Carlevaro-Fita, Taisia Polidori, Monalisa Das, Carmen Navarro, Tatjana I Zoller, Rory Johnson
Ancient exapted transposable elements promote nuclear enrichment of human long noncoding RNAs. Genome research 29 (2) (2018)
Julien Lagarde, Barbara Uszczynska-Ratajczak, Silvia Carbonell, Sílvia Pérez-Lluch, Amaya Abad, Carrie Davis, Thomas R Gingeras, Adam Frankish, Jennifer Harrow, Roderic Guigo, Rory Johnson
High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing. Nature genetics 49 (12) (2017)
David Mas-Ponte, Joana Carlevaro-Fita, Emilio Palumbo, Antonio Hermoso Pulido, Roderic Guigo, Rory Johnson
LncATLAS database for subcellular localization of long noncoding RNAs. RNA (New York, N.Y.) 23 (7) (2017)
Carlos Pulido-Quetglas, Estel Aparicio-Prat, Carme Arnan, Taisia Polidori, Antonio Hermoso Pulido, Emilio Palumbo, Julia Ponomarenko, Roderic Guigo, Rory Johnson
Scalable Design of Paired CRISPR Guide RNAs for Genomic Deletion. PLoS computational biology 13 (3) (2017)
Jocelyn Plassais, Laetitia Lagoutte, Solenne Correard, Manon Paradis, Eric Guaguère, Benoit Hédan, Alix Pommier, Nadine Botherel, Marie Christine Cadiergues, Philippe Pilorge, David Silversides, Maud Bizot, Mark Samuels, Carme Arnan, Rory Johnson, Christophe Hitte, Gilles Salbert, Agnès Méreau, Pascale Quignon, Thomas Derrien, Catherine André
A Point Mutation in a lincRNA Upstream of GDNF Is Associated to a Canine Insensitivity to Pain: A Spontaneous Model for Human Sensory Neuropathies. PLoS genetics 12 (12) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Rory Johnson