Frederic D Bushman (Frederic Bushman, F D Bushman)

ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 72

Top Venues

mBio

Nature

Nature medicine

Microbiology resource announcements

This page only lists publications with an associated author ORCID identifier.

Publications

Ashley Sobel Leonard, Lydia Mendoza, Alexander G McFarland, Andrew D Marques, John K Everett, Louise Moncla, Frederic D Bushman, Audrey R Odom John, Scott E Hensley
Within-host influenza viral diversity in the pediatric population as a function of age, vaccine, and health status. Virus evolution 10 (1) (2024)
Andrew D Marques, Jevon Graham-Wooten, Ayannah S Fitzgerald, Ashley Sobel Leonard, Emma J Cook, John K Everett, Kyle G Rodino, Louise H Moncla, Brendan J Kelly, Ronald G Collman, Frederic D Bushman
SARS-CoV-2 evolution during prolonged infection in immunocompromised patients. mBio (2024)
Andrew D Marques, Jevon Graham-Wooten, Ayannah S Fitzgerald, Ashley Sobel Leonard, Emma J Cook, John K Everett, Kyle G Rodino, Louise H Moncla, Brendan J Kelly, Ronald G Collman, Frederic D Bushman
SARS-CoV-2 evolution during prolonged infection in immunocompromised patients. mBio 15 (3) (2024)
Jiayi Duan, Emma Keeler, Alexander McFarland, Phillip Scott, Ronald G Collman, Frederic D Bushman
The virome of the kitome: small circular virus-like genomes in laboratory reagents. Microbiology resource announcements (2024)
Nikhila S Tanneti, Anant K Patel, Li Hui Tan, Andrew D Marques, Ranawaka A P M Perera, Scott Sherrill-Mix, Brendan J Kelly, David M Renner, Ronald G Collman, Kyle Rodino, Carole Lee, Frederic D Bushman, Noam A Cohen, Susan R Weiss
Comparison of SARS-CoV-2 variants of concern in primary human nasal cultures demonstrates Delta as most cytopathic and Omicron as fastest replicating. mBio 15 (4) (2024)
Ashley Sobel Leonard, Lydia Mendoza, Alexander G McFarland, Andrew D Marques, John K Everett, Louise Moncla, Frederic D Bushman, Audrey R Odom John, Scott E Hensley
Within-host influenza viral diversity in the pediatric population as a function of age, vaccine, and health status. Virus evolution 10 (1) (2024)
Nikhila S Tanneti, Anant K Patel, Li Hui Tan, Andrew D Marques, Ranawaka A P M Perera, Scott Sherrill-Mix, Brendan J Kelly, David M Renner, Ronald G Collman, Kyle Rodino, Carole Lee, Frederic D Bushman, Noam A Cohen, Susan R Weiss
Comparison of SARS-CoV-2 variants of concern in primary human nasal cultures demonstrates Delta as most cytopathic and Omicron as fastest replicating. mBio 15 (4) (2024)
Andrew D Marques, Jevon Graham-Wooten, Ayannah S Fitzgerald, Ashley Sobel Leonard, Emma J Cook, John K Everett, Kyle G Rodino, Louise H Moncla, Brendan J Kelly, Ronald G Collman, Frederic D Bushman
SARS-CoV-2 evolution during prolonged infection in immunocompromised patients. mBio 15 (3) (2024)
Ashley Sobel Leonard, Lydia Mendoza, Alexander G McFarland, Andrew D Marques, John K Everett, Louise Moncla, Frederic D Bushman, Audrey R Odom John, Scott E Hensley
Within-host influenza viral diversity in the pediatric population as a function of age, vaccine, and health status. Virus evolution 10 (1) (2024)
Nikhila S Tanneti, Anant K Patel, Li Hui Tan, Andrew D Marques, Ranawaka A P M Perera, Scott Sherrill-Mix, Brendan J Kelly, David M Renner, Ronald G Collman, Kyle Rodino, Carole Lee, Frederic D Bushman, Noam A Cohen, Susan R Weiss
Comparison of SARS-CoV-2 variants of concern in primary human nasal cultures demonstrates Delta as most cytopathic and Omicron as fastest replicating. mBio 15 (4) (2024)
Nikhila S Tanneti, Anant K Patel, Li Hui Tan, Andrew D Marques, Ranawaka A P M Perera, Scott Sherrill-Mix, Brendan J Kelly, David M Renner, Ronald G Collman, Kyle Rodino, Carole Lee, Frederic D Bushman, Noam A Cohen, Susan R Weiss
Comparison of SARS-CoV-2 variants of concern in primary human nasal cultures demonstrates Delta as most cytopathic and Omicron as fastest replicating. mBio (2024)
Nikhila S Tanneti, Anant K Patel, Li Hui Tan, Andrew D Marques, Ranawaka A P M Perera, Scott Sherrill-Mix, Brendan J Kelly, David M Renner, Ronald G Collman, Kyle Rodino, Carole Lee, Frederic D Bushman, Noam A Cohen, Susan R Weiss
Comparison of SARS-CoV-2 variants of concern in primary human nasal cultures demonstrates Delta as most cytopathic and Omicron as fastest replicating. mBio (2024)
Andrew D Marques, Jevon Graham-Wooten, Ayannah S Fitzgerald, Ashley Sobel Leonard, Emma J Cook, John K Everett, Kyle G Rodino, Louise H Moncla, Brendan J Kelly, Ronald G Collman, Frederic D Bushman
SARS-CoV-2 evolution during prolonged infection in immunocompromised patients. mBio 15 (3) (2024)
Jiayi Duan, Emma Keeler, Alexander McFarland, Phillip Scott, Ronald G Collman, Frederic D Bushman
The virome of the kitome: small circular virus-like genomes in laboratory reagents. Microbiology resource announcements (2024)
Nikhila S Tanneti, Anant K Patel, Li Hui Tan, Andrew D Marques, Ranawaka A P M Perera, Scott Sherrill-Mix, Brendan J Kelly, David M Renner, Ronald G Collman, Kyle Rodino, Carole Lee, Frederic D Bushman, Noam A Cohen, Susan R Weiss
Comparison of SARS-CoV-2 variants of concern in primary human nasal cultures demonstrates Delta as most cytopathic and Omicron as fastest replicating. mBio 15 (4) (2024)
Jiayi Duan, Emma Keeler, Alexander McFarland, Phillip Scott, Ronald G Collman, Frederic D Bushman
The virome of the kitome: small circular virus-like genomes in laboratory reagents. Microbiology resource announcements (2024)
David S Hong, Brian Andrew Van Tine, Swethajit Biswas, Cheryl McAlpine, Melissa L Johnson, Anthony J Olszanski, Jeffrey M Clarke, Dejka Araujo, George R Blumenschein, Partow Kebriaei, Quan Lin, Alex J Tipping, Joseph P Sanderson, Ruoxi Wang, Trupti Trivedi, Thejo Annareddy, Jane Bai, Stavros Rafail, Amy Sun, Lilliam Fernandes, Jean-Marc Navenot, Frederic D Bushman, John K Everett, Derin Karadeniz, Robyn Broad, Martin Isabelle, Revashnee Naidoo, Natalie Bath, Gareth Betts, Zohar Wolchinsky, Dzmitry G Batrakou, Erin Van Winkle, Erica Elefant, Armin Ghobadi, Amanda Cashen, Anne Grand'Maison, Philip McCarthy, Paula M Fracasso, Elliot Norry, Dennis Williams, Mihaela Druta, David A Liebner, Kunle Odunsi, Marcus O Butler
Autologous T cell therapy for MAGE-A4 + solid cancers in HLA-A*02 + patients: a phase 1 trial. Nature medicine 29 (1) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
David S Hong, Brian Andrew Van Tine, Swethajit Biswas, Cheryl McAlpine, Melissa L Johnson, Anthony J Olszanski, Jeffrey M Clarke, Dejka Araujo, George R Blumenschein, Partow Kebriaei, Quan Lin, Alex J Tipping, Joseph P Sanderson, Ruoxi Wang, Trupti Trivedi, Thejo Annareddy, Jane Bai, Stavros Rafail, Amy Sun, Lilliam Fernandes, Jean-Marc Navenot, Frederic D Bushman, John K Everett, Derin Karadeniz, Robyn Broad, Martin Isabelle, Revashnee Naidoo, Natalie Bath, Gareth Betts, Zohar Wolchinsky, Dzmitry G Batrakou, Erin Van Winkle, Erica Elefant, Armin Ghobadi, Amanda Cashen, Anne Grand'Maison, Philip McCarthy, Paula M Fracasso, Elliot Norry, Dennis Williams, Mihaela Druta, David A Liebner, Kunle Odunsi, Marcus O Butler
Autologous T cell therapy for MAGE-A4 + solid cancers in HLA-A*02 + patients: a phase 1 trial. Nature medicine 29 (1) (2023)
David S Hong, Brian Andrew Van Tine, Swethajit Biswas, Cheryl McAlpine, Melissa L Johnson, Anthony J Olszanski, Jeffrey M Clarke, Dejka Araujo, George R Blumenschein, Partow Kebriaei, Quan Lin, Alex J Tipping, Joseph P Sanderson, Ruoxi Wang, Trupti Trivedi, Thejo Annareddy, Jane Bai, Stavros Rafail, Amy Sun, Lilliam Fernandes, Jean-Marc Navenot, Frederic D Bushman, John K Everett, Derin Karadeniz, Robyn Broad, Martin Isabelle, Revashnee Naidoo, Natalie Bath, Gareth Betts, Zohar Wolchinsky, Dzmitry G Batrakou, Erin Van Winkle, Erica Elefant, Armin Ghobadi, Amanda Cashen, Anne Grand'Maison, Philip McCarthy, Paula M Fracasso, Elliot Norry, Dennis Williams, Mihaela Druta, David A Liebner, Kunle Odunsi, Marcus O Butler
Autologous T cell therapy for MAGE-A4 + solid cancers in HLA-A*02 + patients: a phase 1 trial. Nature medicine 29 (1) (2023)
David S Hong, Brian Andrew Van Tine, Swethajit Biswas, Cheryl McAlpine, Melissa L Johnson, Anthony J Olszanski, Jeffrey M Clarke, Dejka Araujo, George R Blumenschein, Partow Kebriaei, Quan Lin, Alex J Tipping, Joseph P Sanderson, Ruoxi Wang, Trupti Trivedi, Thejo Annareddy, Jane Bai, Stavros Rafail, Amy Sun, Lilliam Fernandes, Jean-Marc Navenot, Frederic D Bushman, John K Everett, Derin Karadeniz, Robyn Broad, Martin Isabelle, Revashnee Naidoo, Natalie Bath, Gareth Betts, Zohar Wolchinsky, Dzmitry G Batrakou, Erin Van Winkle, Erica Elefant, Armin Ghobadi, Amanda Cashen, Anne Grand'Maison, Philip McCarthy, Paula M Fracasso, Elliot Norry, Dennis Williams, Mihaela Druta, David A Liebner, Kunle Odunsi, Marcus O Butler
Autologous T cell therapy for MAGE-A4 + solid cancers in HLA-A*02 + patients: a phase 1 trial. Nature medicine 29 (1) (2023)
In-Young Jung, Robert L Bartoszek, Andrew J Rech, Sierra M Collins, Soon-Keat Ooi, Erik F Williams, Caitlin R Hopkins, Vivek Narayan, Naomi B Haas, Noelle V Frey, Elizabeth O Hexner, Donald L Siegel, Gabriela Plesa, David L Porter, Vito Adrian Cantu, John K Everett, Sonia Guedan, Shelley L Berger, Frederic D Bushman, Friederike Herbst, Joseph A Fraietta
Type I Interferon Signaling via the EGR2 Transcriptional Regulator Potentiates CAR T cell-intrinsic Dysfunction. Cancer discovery (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Seán T Anderson, Hu Meng, Thomas G Brooks, Soon Yew Tang, Ronan Lordan, Arjun Sengupta, Soumyashant Nayak, Antonijo Mřela, Dimitra Sarantopoulou, Nicholas F Lahens, Aalim M Weiljie, Gregory R Grant, Frederic D Bushman, Garret A FitzGerald
Sexual dimorphism in the response to chronic circadian misalignment on a high-fat diet. Science translational medicine 15 (696) (2023)
David S Hong, Brian Andrew Van Tine, Swethajit Biswas, Cheryl McAlpine, Melissa L Johnson, Anthony J Olszanski, Jeffrey M Clarke, Dejka Araujo, George R Blumenschein, Partow Kebriaei, Quan Lin, Alex J Tipping, Joseph P Sanderson, Ruoxi Wang, Trupti Trivedi, Thejo Annareddy, Jane Bai, Stavros Rafail, Amy Sun, Lilliam Fernandes, Jean-Marc Navenot, Frederic D Bushman, John K Everett, Derin Karadeniz, Robyn Broad, Martin Isabelle, Revashnee Naidoo, Natalie Bath, Gareth Betts, Zohar Wolchinsky, Dzmitry G Batrakou, Erin Van Winkle, Erica Elefant, Armin Ghobadi, Amanda Cashen, Anne Grand'Maison, Philip McCarthy, Paula M Fracasso, Elliot Norry, Dennis Williams, Mihaela Druta, David A Liebner, Kunle Odunsi, Marcus O Butler
Autologous T cell therapy for MAGE-A4 + solid cancers in HLA-A*02 + patients: a phase 1 trial. Nature medicine 29 (1) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
David S Hong, Brian Andrew Van Tine, Swethajit Biswas, Cheryl McAlpine, Melissa L Johnson, Anthony J Olszanski, Jeffrey M Clarke, Dejka Araujo, George R Blumenschein, Partow Kebriaei, Quan Lin, Alex J Tipping, Joseph P Sanderson, Ruoxi Wang, Trupti Trivedi, Thejo Annareddy, Jane Bai, Stavros Rafail, Amy Sun, Lilliam Fernandes, Jean-Marc Navenot, Frederic D Bushman, John K Everett, Derin Karadeniz, Robyn Broad, Martin Isabelle, Revashnee Naidoo, Natalie Bath, Gareth Betts, Zohar Wolchinsky, Dzmitry G Batrakou, Erin Van Winkle, Erica Elefant, Armin Ghobadi, Amanda Cashen, Anne Grand'Maison, Philip McCarthy, Paula M Fracasso, Elliot Norry, Dennis Williams, Mihaela Druta, David A Liebner, Kunle Odunsi, Marcus O Butler
Autologous T cell therapy for MAGE-A4 + solid cancers in HLA-A*02 + patients: a phase 1 trial. Nature medicine (2023)
Seán T Anderson, Hu Meng, Thomas G Brooks, Soon Yew Tang, Ronan Lordan, Arjun Sengupta, Soumyashant Nayak, Antonijo Mřela, Dimitra Sarantopoulou, Nicholas F Lahens, Aalim M Weiljie, Gregory R Grant, Frederic D Bushman, Garret A FitzGerald
Sexual dimorphism in the response to chronic circadian misalignment on a high-fat diet. Science translational medicine 15 (696) (2023)
Kyle G Rodino, David R Peaper, Brendan J Kelly, Frederic D Bushman, Andrew Marques, Hriju Adhikari, Zheng Jin Tu, Rebecca Marrero Rolon, Lars F Westblade, Daniel A Green, Gregory J Berry, Fann Wu, Medini K Annavajhala, Anne-Catrin Uhlemann, Bijal A Parikh, Tracy McMillen, Krupa Jani, N Esther Babady, Anne M Hahn, Robert T Koch, Nathan D Grubaugh, null null, Daniel D Rhoads
Partial ORF1ab Gene Target Failure with Omicron BA.2.12.1. medRxiv : the preprint server for health sciences (2022)
Jeremy Wang, Shawn E Hawken, Corbin D Jones, Robert S Hagan, Frederic D Bushman, John Everett, Melissa B Miller, Kyle G Rodino
Collaboration between Clinical and Academic Laboratories for Sequencing SARS-CoV-2 Genomes. Journal of clinical microbiology 60 (3) (2022)
Vivek Narayan, Julie S Barber-Rotenberg, In-Young Jung, Simon F Lacey, Andrew J Rech, Megan M Davis, Wei-Ting Hwang, Priti Lal, Erica L Carpenter, Shannon L Maude, Gabriela Plesa, Neha Vapiwala, Anne Chew, Michael Moniak, Ronnie A Sebro, Michael D Farwell, Amy Marshall, Joan Gilmore, Lester Lledo, Karen Dengel, Sarah E Church, Tyler D Hether, Jun Xu, Mercy Gohil, Thomas H Buckingham, Stephanie S Yee, Vanessa E Gonzalez, Irina Kulikovskaya, Fang Chen, Lifeng Tian, Kyle Tien, Whitney Gladney, Christopher L Nobles, Hayley E Raymond, null null, Elizabeth O Hexner, Donald L Siegel, Frederic D Bushman, Carl H June, Joseph A Fraietta, Naomi B Haas
PSMA-targeting TGFβ-insensitive armored CAR T cells in metastatic castration-resistant prostate cancer: a phase 1 trial. Nature medicine 28 (4) (2022)
Alexander B Smith, Matthew L Jenior, Orlaith Keenan, Jessica L Hart, Jonathan T Specker, Arwa Abbas, Paula C Rangel, Chao Di, Jamal Green, Katelyn A Bustin, Jennifer A Gaddy, Maribeth R Nicholson, Clare Laut, Brendan J Kelly, Megan L Matthews, Daniel R Evans, Daria Van Tyne, Emma E Furth, Jason A Papin, Frederic D Bushman, Jessi Erlichman, Robert N Baldassano, Michael A Silverman, Gary M Dunny, Boone M Prentice, Eric P Skaar, Joseph P Zackular
Enterococci enhance Clostridioides difficile pathogenesis. Nature 611 (7937) (2022)
John E McGinniss, Samantha A Whiteside, Rebecca A Deek, Aurea Simon-Soro, Jevon Graham-Wooten, Michelle Oyster, Melanie D Brown, Edward Cantu, Joshua M Diamond, Hongzhe Li, Jason D Christie, Frederic D Bushman, Ronald G Collman
The Lung Allograft Microbiome Associates with Pepsin, Inflammation, and Primary Graft Dysfunction. American journal of respiratory and critical care medicine (2022)
Jan Joseph Melenhorst, Gregory M Chen, Meng Wang, David L Porter, Changya Chen, McKensie A Collins, Peng Gao, Shovik Bandyopadhyay, Hongxing Sun, Ziran Zhao, Stefan Lundh, Iulian Pruteanu-Malinici, Christopher L Nobles, Sayantan Maji, Noelle V Frey, Saar I Gill, Alison W Loren, Lifeng Tian, Irina Kulikovskaya, Minnal Gupta, David E Ambrose, Megan M Davis, Joseph A Fraietta, Jennifer L Brogdon, Regina M Young, Anne Chew, Bruce L Levine, Donald L Siegel, Cécile Alanio, E John Wherry, Frederic D Bushman, Simon F Lacey, Kai Tan, Carl H June
Decade-long leukaemia remissions with persistence of CD4 + CAR T cells. Nature 602 (7897) (2022)
A Magnani, M Semeraro, Frédéric Adam, C Booth, L Dupré, Emma Catherine Morris, A Gabrion, C Roudaut, D Borgel, Antoine Toubert, Emmanuel Clave, C Abdo, G Gorochov, R Petermann, M Guiot, M Miyara, D Moshous, E Magrin, A Denis, F Suarez, Chantal Lagresle-Peyrou, A M Roche, J Everett, A Trinquand, M Guisset, J Xu Bayford, S Hacein-Bey-Abina, Alexandre Kauskot, R Elfeky, C Rivat, S Abbas, H B Gaspar, Elizabeth A Macintyre, C Picard, Frederic D Bushman, A Galy, Alain Fischer, Emmanuelle Six, Adrian J Thrasher, Marina Cavazzana
Long-term safety and efficacy of lentiviral hematopoietic stem/progenitor cell gene therapy for Wiskott-Aldrich syndrome. Nature medicine 28 (1) (2022)
Carter Merenstein, Guanxiang Liang, Samantha A Whiteside, Ana G Cobián-Güemes, Madeline S Merlino, Louis J Taylor, Abigail Glascock, Kyle Bittinger, Ceylan Tanes, Jevon Graham-Wooten, Layla A Khatib, Ayannah S Fitzgerald, Shantan Reddy, Amy E Baxter, Josephine R Giles, Derek A Oldridge, Nuala J Meyer, E John Wherry, John E McGinniss, Frederic D Bushman, Ronald G Collman
Correction for Merenstein et al., "Signatures of COVID-19 Severity and Immune Response in the Respiratory Tract Microbiome". mBio 13 (5) (2022)
Jan Joseph Melenhorst, Gregory M Chen, Meng Wang, David L Porter, Changya Chen, McKensie A Collins, Peng Gao, Shovik Bandyopadhyay, Hongxing Sun, Ziran Zhao, Stefan Lundh, Iulian Pruteanu-Malinici, Christopher L Nobles, Sayantan Maji, Noelle V Frey, Saar I Gill, Alison W Loren, Lifeng Tian, Irina Kulikovskaya, Minnal Gupta, David E Ambrose, Megan M Davis, Joseph A Fraietta, Jennifer L Brogdon, Regina M Young, Anne Chew, Bruce L Levine, Donald L Siegel, Cécile Alanio, E John Wherry, Frederic D Bushman, Simon F Lacey, Kai Tan, Carl H June
Author Correction: Decade-long leukaemia remissions with persistence of CD4 + CAR T cells. Nature (2022)
Andrew D Marques, Scott Sherrill-Mix, John K Everett, Shantan Reddy, Pascha Hokama, Aoife M Roche, Young Hwang, Abigail Glascock, Samantha A Whiteside, Jevon Graham-Wooten, Layla A Khatib, Ayannah S Fitzgerald, Ahmed M Moustafa, Colleen Bianco, Swetha Rajagopal, Jenna Helton, Regan Deming, Lidiya Denu, Azad Ahmed, Eimear Kitt, Susan E Coffin, Claire Newbern, Josh Chang Mell, Paul J Planet, Nitika Badjatia, Bonnie Richards, Zi-Xuan Wang, Carolyn C Cannuscio, Katherine M Strelau, Anne Jaskowiak-Barr, Leigh Cressman, Sean Loughrey, Arupa Ganguly, Michael D Feldman, Ronald G Collman, Kyle G Rodino, Brendan J Kelly, Frederic D Bushman
SARS-CoV-2 Variants Associated with Vaccine Breakthrough in the Delaware Valley through Summer 2021. mBio (2022)
Andrew D Marques, Scott Sherrill-Mix, John K Everett, Hriju Adhikari, Shantan Reddy, Julie C Ellis, Haley Zeliff, Sabrina S Greening, Carolyn C Cannuscio, Katherine M Strelau, Ronald G Collman, Brendan J Kelly, Kyle G Rodino, Frederic D Bushman, Roderick B Gagne, Eman Anis
Multiple Introductions of SARS-CoV-2 Alpha and Delta Variants into White-Tailed Deer in Pennsylvania. mBio 13 (5) (2022)
Kyle G Rodino, David R Peaper, Brendan J Kelly, Frederic D Bushman, Andrew Marques, Hriju Adhikari, Zheng Jin Tu, Rebecca Marrero Rolon, Lars F Westblade, Daniel A Green, Gregory J Berry, Fann Wu, Medini K Annavajhala, Anne-Catrin Uhlemann, Bijal A Parikh, Tracy McMillen, Krupa Jani, N Esther Babady, Anne M Hahn, Robert T Koch, Nathan D Grubaugh, null null, Daniel D Rhoads
Partial ORF1ab Gene Target Failure with Omicron BA.2.12.1. Journal of clinical microbiology 60 (6) (2022)
Olivia C Lenz, Andrew D Marques, Brendan J Kelly, Kyle G Rodino, Stephen D Cole, Ranawaka A P M Perera, Susan R Weiss, Frederic D Bushman, Elizabeth M Lennon
Detection and Interspecies Comparison of SARS-CoV-2 Delta Variant (AY.3) in Feces from a Domestic Cat and Human Samples. bioRxiv : the preprint server for biology (2022)
Frederic D Bushman, Guanxiang Liang
Breastfeeding influences the neonatal virome. Nature (2021)
Emma L Keeler, Louis J Taylor, Arwa Abbas, Ronald G Collman, Frederic D Bushman
Rengasvirus, a Circular Replication-Associated Protein-Encoding Single-Stranded DNA Virus-Related Genome That Is a Common Contaminant in Metagenomic Data. Microbiology resource announcements 10 (18) (2021)
Guanxiang Liang, Frederic D Bushman
The human virome: assembly, composition and host interactions. Nature reviews. Microbiology 19 (8) (2021)
Ahmed M Moustafa, Colleen Bianco, Lidiya Denu, Azad Ahmed, Susan E Coffin, Brandy Neide, John Everett, Shantan Reddy, Emilie Rabut, Jasmine Deseignora, Michael D Feldman, Kyle G Rodino, Frederic D Bushman, Rebecca M Harris, Josh Chang Mell, Paul J Planet
Comparative Analysis of Emerging B.1.1.7+E484K SARS-CoV-2 Isolates. Open forum infectious diseases 8 (7) (2021)
Scott Sherrill-Mix, Young Hwang, Aoife M Roche, Abigail Glascock, Susan R Weiss, Yize Li, Leila Haddad, Peter Deraska, Caitlin Monahan, Andrew Kromer, Jevon Graham-Wooten, Louis J Taylor, Benjamin S Abella, Arupa Ganguly, Ronald G Collman, Gregory D Van Duyne, Frederic D Bushman
Detection of SARS-CoV-2 RNA using RT-LAMP and molecular beacons. Genome biology 22 (1) (2021)
Louis J Taylor, Marisol I Dothard, Meagan A Rubel, Audrey A Allen, Young Hwang, Aoife M Roche, Jevon Graham-Wooten, Ayannah S Fitzgerald, Layla A Khatib, Alessia Ranciaro, Simon R Thompson, William R Beggs, Michael C Campbell, Gaonyadiwe G Mokone, Sununguko Wata Mpoloka, Charles Fokunang, Alfred K Njamnshi, Eric Mbunwe, Dawit Woldemeskel, Gurja Belay, Thomas Nyambo, Sarah A Tishkoff, Ronald G Collman, Frederic D Bushman
Redondovirus Diversity and Evolution on Global, Individual, and Molecular Scales. Journal of virology 95 (21) (2021)
Runxia Liu, Yang-Hui Jimmy Yeh, Ales Varabyou, Jack A Collora, Scott Sherrill-Mix, C Conover Talbot, Sameet Mehta, Kristen Albrecht, Haiping Hao, Hao Zhang, Ross A Pollack, Subul A Beg, Rachela M Calvi, Jianfei Hu, Christine M Durand, Richard F Ambinder, Rebecca Hoh, Steven G Deeks, Jennifer Chiarella, Serena Spudich, Daniel C Douek, Frederic D Bushman, Mihaela Pertea, Ya-Chi Ho
Single-cell transcriptional landscapes reveal HIV-1-driven aberrant host gene transcription as a potential therapeutic target. Science translational medicine 12 (543) (2021)
Daniela Cesana, Andrea Calabria, Laura Rudilosso, Pierangela Gallina, Fabrizio Benedicenti, Giulio Spinozzi, Giulia Schiroli, Alessandra Magnani, Serena Acquati, Francesca Fumagalli, Valeria Calbi, Maximilian Witzel, Frederic D Bushman, Alessio Cantore, Pietro Genovese, Christoph Klein, Alain Fischer, Marina Cavazzana, Emmanuelle Six, Alessandro Aiuti, Luigi Naldini, Eugenio Montini
Retrieval of vector integration sites from cell-free DNA. Nature medicine 27 (8) (2021)
Edward A Stadtmauer, Joseph A Fraietta, Megan M Davis, Adam David Cohen, Kristy L Weber, Eric Lancaster, Patricia A Mangan, Irina Kulikovskaya, Minnal Gupta, Fang Chen, Lifeng Tian, Vanessa E Gonzalez, Jun Xu, In-Young Jung, J Joseph Melenhorst, Gabriela Plesa, Joanne Shea, Tina Matlawski, Amanda Cervini, Avery L Gaymon, Stephanie Desjardins, Anne Lamontagne, January Salas-Mckee, Andrew D Fesnak, Donald L Siegel, Bruce L Levine, Julie K Jadlowsky, Regina M Young, Anne Chew, Wei-Ting Hwang, Elizabeth O Hexner, Beatriz M Carreno, Christopher L Nobles, Frederic D Bushman, Kevin R Parker, Yanyan Qi, Ansuman T Satpathy, Howard Y Chang, Yangbing Zhao, Simon F Lacey, Carl H June
CRISPR-engineered T cells in patients with refractory cancer. Science (New York, N.Y.) 367 (6481) (2020)
Donald B Kohn, Claire Booth, Elizabeth M Kang, Sung-Yun Pai, Kit L Shaw, Giorgia Santilli, Myriam Armant, Karen F Buckland, Uimook Choi, Suk See De Ravin, Morna J Dorsey, Caroline Y Kuo, Diego Leon-Rico, Christine Rivat, Natalia Izotova, Kimberly Gilmour, Katie Snell, Jinhua Xu-Bayford Dip, Jinan Darwish, Emma Catherine Morris, Dayna Terrazas, Leo D Wang, Christopher A Bauser, Tobias Paprotka, Douglas B Kuhns, John Gregg, Hayley E Raymond, John K Everett, Geraldine Honnet, Luca Biasco, Peter E Newburger, Frederic D Bushman, Manuel Grez, H Bobby Gaspar, David A Williams, Harry L Malech, Anne Galy, Adrian J Thrasher, null null
Lentiviral gene therapy for X-linked chronic granulomatous disease. Nature medicine 26 (2) (2020)
Kyle Bittinger, Chunyu Zhao, Yun Li, Eileen Ford, Elliot S Friedman, Josephine Ni, Chiraag V Kulkarni, Jingwei Cai, Yuan Tian, Qing Liu, Andrew D Patterson, Debolina Sarkar, Siu Hung Joshua Chan, Costas Maranas, Anumita Saha-Shah, Peder Lund, Benjamin A Garcia, Lisa M Mattei, Jeffrey S Gerber, Michal A Elovitz, Andrea Kelly, Patricia DeRusso, Dorothy Kim, Casey E Hofstaedter, Mark Goulian, Hongzhe Li, Frederic D Bushman, Babette S Zemel, Gary D Wu
Bacterial colonization reprograms the neonatal gut metabolome. Nature microbiology 5 (6) (2020)
Giang N Nguyen, John K Everett, Samita Kafle, Aoife M Roche, Hayley E Raymond, Jacob Leiby, Christian Wood, Charles-Antoine Assenmacher, Elizabeth P Merricks, C Tyler Long, Haig H Kazazian, Timothy C Nichols, Frederic D Bushman, Denise E Sabatino
A long-term study of AAV gene therapy in dogs with hemophilia A identifies clonal expansions of transduced liver cells. Nature biotechnology 39 (1) (2020)
Guanxiang Liang, Chunyu Zhao, Huanjia Zhang, Lisa M Mattei, Scott Sherrill-Mix, Kyle Bittinger, Lyanna R Kessler, Gary D Wu, Robert N Baldassano, Patricia DeRusso, Eileen Ford, Michal A Elovitz, Matthew S Kelly, Mohamed Z Patel, Tiny Mazhani, Jeffrey S Gerber, Andrea Kelly, Babette S Zemel, Frederic D Bushman
The stepwise assembly of the neonatal virome is modulated by breastfeeding. Nature 581 (7809) (2020)
Moreno Zolfo, Federica Pinto, Francesco Asnicar, Paolo Manghi, Adrian Tett, Frederic D Bushman, Nicola Segata
Detecting contamination in viromes using ViromeQC. Nature biotechnology 37 (12) (2020)
Mohamed Abdel-Mohsen, Douglas D Richman, Robert F Siliciano, Michel C Nussenzweig, Bonnie J Howell, Javier Martínez Picado, Nicolas Chomont, Katharine J Bar, Xu G Yu, Mathias Lichterfeld, José Alcamí, Daria Hazuda, Frederic D Bushman, Janet D Siliciano, Michael R Betts, Adam M Spivak, Vicente Planelles, Beatrice H Hahn, Davey M Smith, Ya-Chi Ho, Maria José Buzón, Christian Gaebler, Mirko Paiardini, Qingsheng Li, Jacob D Estes, Thomas J Hope, Jay Kostman, Karam Mounzer, Marina Caskey, Lawrence Fox, Ian Frank, James L Riley, Pablo Tebas, Luis J Montaner, null null
Recommendations for measuring HIV reservoir size in cure-directed clinical trials. Nature medicine 26 (9) (2020)
Christopher L Nobles, Shantan Reddy, January Salas-McKee, Xiaojun Liu, Carl H June, J Joseph Melenhorst, Megan M Davis, Yangbing Zhao, Frederic D Bushman
iGUIDE: an improved pipeline for analyzing CRISPR cleavage specificity. Genome biology 20 (1) (2019)
Frederic D Bushman, Kevin McCormick, Scott Sherrill-Mix
Virus structures constrain transmission modes. Nature microbiology 4 (11) (2019)
Arwa A Abbas, Jacque C Young, Erik L Clarke, Joshua M Diamond, Ize Imai, Andrew R Haas, Edward Cantu, David J Lederer, Keith Meyer, Rita K Milewski, Kim M Olthoff, Abraham Shaked, Jason D Christie, Frederic D Bushman, Ronald G Collman
Bidirectional transfer of Anelloviridae lineages between graft and host during lung transplantation. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons 19 (4) (2018)
Erik L Clarke, A Jesse Connell, Emmanuelle Six, Nadia A Kadry, Arwa A Abbas, Young Hwang, John K Everett, Casey E Hofstaedter, Rebecca Marsh, Myriam Armant, Judith Kelsen, Luigi D Notarangelo, Ronald G Collman, Salima Hacein-Bey-Abina, Donald B Kohn, Marina Cavazzana, Alain Fischer, David A Williams, Sung-Yun Pai, Frederic D Bushman
T cell dynamics and response of the microbiota after gene therapy to treat X-linked severe combined immunodeficiency. Genome medicine 10 (1) (2018)
Jacob S Leiby, Kevin McCormick, Scott Sherrill-Mix, Erik L Clarke, Lyanna R Kessler, Louis J Taylor, Casey E Hofstaedter, Aoife M Roche, Lisa M Mattei, Kyle Bittinger, Michal A Elovitz, Rita Leite, Samuel Parry, Frederic D Bushman
Lack of detection of a human placenta microbiome in samples from preterm and term deliveries. Microbiome 6 (1) (2018)
Vincent R Knecht, John E McGinniss, Hari M Shankar, Erik L Clarke, Brendan J Kelly, Ize Imai, Ayannah S Fitzgerald, Kyle Bittinger, Frederic D Bushman, Ronald G Collman
Molecular analysis of bacterial contamination on stethoscopes in an intensive care unit. Infection control and hospital epidemiology 40 (2) (2018)
Paul Igor Costea, Falk Hildebrand, Manimozhiyan Arumugam, Fredrik Bäckhed, Martin J Blaser, Frederic D Bushman, Willem Meindert de Vos, S Dusko Ehrlich, Claire M Fraser, Masahira Hattori, Curtis Huttenhower, Ian B Jeffery, Dan Knights, James D Lewis, Ruth E Ley, Howard Ochman, Paul W O'Toole, Christopher Quince, David A Relman, Fergus Shanahan, Shinichi Sunagawa, Jun Wang, George M Weinstock, Gary D Wu, Georg Zeller, Liping Zhao, Jeroen Raes, Rob Knight, Peer Bork
Enterotypes in the landscape of gut microbial community composition. Nature microbiology 3 (1) (2017)
Lucie Etienne-Mesmin, Benoit Chassaing, Oluwaseyi Adekunle, Lisa M Mattei, Frederic D Bushman, Andrew T Gewirtz
Toxin-positive Clostridium difficile latently infect mouse colonies and protect against highly pathogenic C. difficile. Gut 67 (5) (2017)
Varun Aggarwala, Guanxiang Liang, Frederic D Bushman
Viral communities of the human gut: metagenomic analysis of composition and dynamics. Mobile DNA 8 (2017)
Carsten Skarke, Nicholas F Lahens, Seth D Rhoades, Amy Campbell, Kyle Bittinger, Aubrey G Bailey, Christopher Hoffmann, Randal S Olson, Lihong Chen, Guangrui Yang, Thomas S Price, Jason H Moore, Frederic D Bushman, Casey S Greene, Gregory R Grant, Aalim M Weljie, Garret A FitzGerald
A Pilot Characterization of the Human Chronobiome. Scientific reports 7 (1) (2017)
Kushol Gupta, Vesa Turkki, Scott Sherrill-Mix, Young Hwang, Grant Eilers, Louis J Taylor, Charlene McDanal, Ping Wang, David Temelkoff, Robert T Nolte, Emile Velthuisen, Jerry Jeffrey, Gregory D Van Duyne, Frederic D Bushman
Structural Basis for Inhibitor-Induced Aggregation of HIV Integrase. PLoS biology 14 (12) (2016)
A A Abbas, J M Diamond, C Chehoud, B Chang, J J Kotzin, J C Young, I Imai, A R Haas, E Cantu, D J Lederer, K C Meyer, R K Milewski, K M Olthoff, A Shaked, J D Christie, Frederic D Bushman, R G Collman
The Perioperative Lung Transplant Virome: Torque Teno Viruses Are Elevated in Donor Lungs and Show Divergent Dynamics in Primary Graft Dysfunction. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons 17 (5) (2016)
Xue Liang, Kyle Bittinger, Xuanwen Li, Darrell R Abernethy, Frederic D Bushman, Garret A FitzGerald
Bidirectional interactions between indomethacin and the murine intestinal microbiota. eLife 4 (2015)
Gary D Wu, Charlene Compher, Eric Z Chen, Sarah A Smith, Rachana D Shah, Kyle Bittinger, Christel Chehoud, Lindsey G Albenberg, Lisa Nessel, Erin Gilroy, Julie Star, Aalim M Weljie, Harry J Flint, David C Metz, Michael J Bennett, Hongzhe Li, Frederic D Bushman, James D Lewis
Comparative metabolomics in vegans and omnivores reveal constraints on diet-dependent gut microbiota metabolite production. Gut 65 (1) (2014)

Frederic D Bushman.css-eqlu8i{font-size:small;padding-left:4px;} (Frederic Bushman, F D Bushman)

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Frederic D Bushman (Frederic Bushman, F D Bushman)