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Alexander J Ruthenburg

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 12

Top Venues

PLoS computational biology

eLife

bioRxiv : the preprint server for biology

Nature chemical biology

University of Chicago

Harvard University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Chicago

United States

Associate Professor :: Molecular Genetics and Cell Biology

Education History

Harvard University

United States

PHD :: Chemistry and Chemical Biology

Publications

Ping Chi, Peter W Lewis, Andrew O M Wilkie, Janice Lu, Alexander J Ruthenburg, Benjamin R Sabari, David Shechter, Liling Wan, Gang Greg Wang
Charles David Allis (1951-2023). Nature genetics (2023)
Rohan N Shah, Alexander J Ruthenburg
Specificity Guides Interpretation: On H3K4 Methylation at Enhancers and Broad Promoters. bioRxiv : the preprint server for biology (2023)
Rohan N Shah, Alexander J Ruthenburg
Specificity Guides Interpretation: On H3K4 Methylation at Enhancers and Broad Promoters. bioRxiv : the preprint server for biology (2023)
Rohan N Shah, Alexander J Ruthenburg
Sequence deeper without sequencing more: Bayesian resolution of ambiguously mapped reads. PLoS computational biology 17 (4) (2021)
William F Richter, Rohan N Shah, Alexander J Ruthenburg
Non-canonical H3K79me2-dependent pathways promote the survival of MLL-rearranged leukemia. eLife 10 (2021)
Mami Oikawa, Angela Simeone, Eva Hormanseder, Marta Teperek, Vincent Gaggioli, Alan Mark O'Doherty, Emma Falk, Matthieu Sporniak, Clive D'Santos, Valar Nila Roamio Franklin, Kamal Kishore, Charles R Bradshaw, Declan Keane, Thomas Freour, Laurent David, Adrian T Grzybowski, Alexander J Ruthenburg, John Gurdon, Jerome Jullien
Epigenetic homogeneity in histone methylation underlies sperm programming for embryonic transcription. Nature communications 11 (1) (2020)
Xiangying Sun, Zhezhen Wang, Johnathon M Hall, Carlos Perez-Cervantes, Alexander J Ruthenburg, Ivan P Moskowitz, Michael Gribskov, Xinan H Yang
Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq. PLoS computational biology 16 (2) (2020)
Adrian T Grzybowski, Rohan N Shah, William F Richter, Alexander J Ruthenburg
Native internally calibrated chromatin immunoprecipitation for quantitative studies of histone post-translational modifications. Nature protocols 14 (12) (2019)
Ankit Gupta, Jing Xu, Shirley Lee, Steven T Tsai, Bo Zhou, Kohei Kurosawa, Michael S Werner, Akiko Koide, Alexander J Ruthenburg, Yali Dou, Shohei Koide
Facile target validation in an animal model with intracellularly expressed monobodies. Nature chemical biology 14 (9) (2018)
Michael S Werner, Matthew A Sullivan, Rohan N Shah, Rangarajan D Nadadur, Adrian T Grzybowski, Vasiliy Galat, Ivan P Moskowitz, Alexander J Ruthenburg
Chromatin-enriched lncRNAs can act as cell-type specific activators of proximal gene transcription. Nature structural & molecular biology 24 (7) (2017)
Xinan H Yang, Rangarajan D Nadadur, Catharina Re Hilvering, Valerio Bianchi, Michael Werner, Stefan R Mazurek, Margaret Gadek, Kaitlyn M Shen, Joseph Aaron Goldman, Leonid Tyan, Jenna Bekeny, Johnathon M Hall, Nutishia Lee, Carlos Perez-Cervantes, Ozanna Burnicka-Turek, Kenneth D Poss, Christopher R Weber, Wouter de Laat, Alexander J Ruthenburg, Ivan P Moskowitz
Transcription-factor-dependent enhancer transcription defines a gene regulatory network for cardiac rhythm. eLife 6 (2017)
Zhonglei Chen, Ryan Q Notti, Beatrix Ueberheide, Alexander J Ruthenburg
Quantitative and Structural Assessment of Histone Methyllysine Analogue Engagement by Cognate Binding Proteins Reveals Affinity Decrements Relative to Those of Native Counterparts. Biochemistry 57 (3) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Alexander J Ruthenburg