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Shohei Koide (S Koide, Akiko Koide)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 31

Top Venues

Nature communications

bioRxiv : the preprint server for biology

Proceedings of the National Academy of Sciences of the United States of America

Nature chemical biology

NYU Langone Medical Center

This page only lists publications with an associated author ORCID identifier.

Affiliation History

NYU Langone Medical Center Mar 1o 2016

United States

Director of Cancer Biologics :: Perlmutter Cancer Center

Publications

Akiko Koide, Shohei Koide
Use of Phage Display and Other Molecular Display Methods for the Development of Monobodies. Cold Spring Harbor protocols (2023)
Jiehui Deng, David H Peng, David Fenyo, Hao Yuan, Alfonso Lopez, Daniel S Levin, Mary Meynardie, Mari Quinteros, Michela Ranieri, Soumyadip Sahu, Sally C M Lau, Elaine Shum, Vamsidhar Velcheti, Salman R Punekar, Natasha Rekhtman, Catríona M Dowling, Vajira K Weerasekara, Yun Xue, Hongbin Ji, Yik Siu, Drew Jones, Aaron N Hata, Takeshi Shimamura, John T Poirier, Charles M Rudin, Takamitsu Hattori, Shohei Koide, Thales Papagiannakopoulos, Benjamin G Neel, Nabeel Bardeesy, Kwok-Kin Wong
In vivo metabolomics identifies CD38 as an emergent vulnerability in LKB1 -mutant lung cancer. bioRxiv : the preprint server for biology (2023)
Yanxiang Meng, Sarah E Garnish, Katherine A Davies, Katrina A Black, Andrew P Leis, Christopher R Horne, Joanne M Hildebrand, Hanadi Hoblos, Cheree Fitzgibbon, Samuel N Young, Toby Dite, Laura F Dagley, Aarya Venkat, Natarajan Kannan, Akiko Koide, Shohei Koide, Alisa Glukhova, Peter E Czabotar, James G Murphy
Phosphorylation-dependent pseudokinase domain dimerization drives full-length MLKL oligomerization. Nature communications 14 (1) (2023)
Ali Rashidfarrokhi, Ray G Pillai, Yuan Hao, Warren L Wu, Burcu Karadal-Ferrena, Sofia G Dimitriadoy, Michael Cross, Anna H Yeaton, Shih Ming Huang, Arjun J Bhutkar, Alberto Herrera, Sahith Rajalingam, Makiko Hayashi, Kuan-Lin Huang, Eric Bartnicki, Anastasia-Maria Zavitsanou, Corrin A Wohlhieter, Sarah E Leboeuf, Ting Chen, Cynthia Loomis, Valeria Mezzano, Ruth Kulicke, Fred P Davis, Nicolas Stransky, Gromoslaw A Smolen, Charles M Rudin, Andre L Moreira, Kamal M Khanna, Harvey I Pass, Kwok-Kin Wong, Shohei Koide, Aristotelis Tsirigos, Sergei B Koralov, Thales Papagiannakopoulos
Tumor-intrinsic LKB1-LIF signaling axis establishes a myeloid niche to promote immune evasion and tumor growth. bioRxiv : the preprint server for biology (2023)
Padma Akkapeddi, Takamitsu Hattori, Imran Khan, Eliezra Glasser, Akiko Koide, Gayatri Ketavarapu, Michael Whaby, Mariyam Zuberi, Kai Wen Teng, Julia Lefler, Lorenzo Maso, Injin Bang, Michael C Ostrowski, John P O'Bryan, Shohei Koide
Exploring switch II pocket conformation of KRAS(G12D) with mutant-selective monobody inhibitors. Proceedings of the National Academy of Sciences of the United States of America 120 (28) (2023)
Jessica R Chapman, Max Paukner, Micheal Leser, Kai Wen Teng, Shohei Koide, Marlene Holder, Karim-Jean Armache, Chris Becker, Beatrix Ueberheide, Michael Brenowitz
Systematic Fe(II)-EDTA Method of Dose-Dependent Hydroxyl Radical Generation for Protein Oxidative Footprinting. Analytical chemistry (2023)
Jiehui Deng, David H Peng, David Fenyo, Hao Yuan, Alfonso Lopez, Daniel S Levin, Mary Meynardie, Mari Quinteros, Michela Ranieri, Soumyadip Sahu, Sally C M Lau, Elaine Shum, Vamsidhar Velcheti, Salman R Punekar, Natasha Rekhtman, Catríona M Dowling, Vajira K Weerasekara, Yun Xue, Hongbin Ji, Yik Siu, Drew Jones, Aaron N Hata, Takeshi Shimamura, John T Poirier, Charles M Rudin, Takamitsu Hattori, Shohei Koide, Thales Papagiannakopoulos, Benjamin G Neel, Nabeel Bardeesy, Kwok-Kin Wong
In vivo metabolomics identifies CD38 as an emergent vulnerability in LKB1 -mutant lung cancer. bioRxiv : the preprint server for biology (2023)
C Albert, L Bracaglia, A Koide, J DiRito, Taras Lysyy, L Harkins, C Edwards, O Richfield, Julian Grundler, K Zhou, E Denbaum, Gayatri Ketavarapu, T Hattori, S Perincheri, J Langford, Alborz Feizi, D Haakinson, S A Hosgood, M L Nicholson, J S Pober, W Mark Saltzman, Shohei Koide, Gregory T Tietjen
Monobody adapter for functional antibody display on nanoparticles for adaptable targeted delivery applications. Nature communications 13 (1) (2022)
Douglas N Brawley, David B Sauer, Jianping Li, Xuhui Zheng, Akiko Koide, Ganesh S Jedhe, Tiffany Suwatthee, Jinmei Song, Zheng Liu, Paramjit S Arora, Shohei Koide, Victor J Torres, Da-Neng Wang, Nathaniel J Traaseth
Structural basis for inhibition of the drug efflux pump NorA from Staphylococcus aureus. Nature chemical biology 18 (7) (2022)
Lauren Wallon, Imran Khan, Kai Wen Teng, Akiko Koide, Mariyam Zuberi, Jianping Li, Gayatri Ketavarapu, Nathaniel J Traaseth, John P O'Bryan, Shohei Koide
Inhibition of RAS-driven signaling and tumorigenesis with a pan-RAS monobody targeting the Switch I/II pocket. Proceedings of the National Academy of Sciences of the United States of America 119 (43) (2022)
Takamitsu Hattori, Lorenzo Maso, Kiyomi Y Araki, Akiko Koide, James Hayman, Padma Akkappedi, Injin Bang, Benjamin G Neel, Shohei Koide
Creating MHC-restricted neoantigens with covalent inhibitors that can be targeted by immune therapy. Cancer discovery (2022)
Yu Matsuzawa-Ishimoto, Xiaomin Yao, Akiko Koide, Beatrix M Ueberheide, Jordan E Axelrad, Bernardo S Reis, Roham Parsa, Jessica A Neil, Joseph C Devlin, Eugene Rudensky, M Zahidunnabi Dewan, Michael Cammer, Richard S Blumberg, Yi Ding, Kelly V Ruggles, Daniel Mucida, Shohei Koide, Ken H Cadwell
The γδ IEL effector API5 masks genetic susceptibility to Paneth cell death. Nature 610 (7932) (2022)
Maria Lopez-Redondo, Shujie Fan, Akiko Koide, Shohei Koide, Oliver Beckstein, David L Stokes
Zinc binding alters the conformational dynamics and drives the transport cycle of the cation diffusion facilitator YiiP. The Journal of general physiology 153 (8) (2021)
Padma Akkappedi, Kai Wen Teng, Shohei Koide
Monobodies as tool biologics for accelerating target validation and druggable site discovery. RSC medicinal chemistry 12 (11) (2021)
Imran Sulaiman, Matthew Chung, Luis F Angel, Jun-Chieh J Tsay, Benjamin G Wu, Stephen T Yeung, Kelsey Krolikowski, Yonghua Li, Ralf Duerr, Rosemary Schluger, Sara A Thannickal, Akiko Koide, Samaan Rafeq, Clea Barnett, Radu Postelnicu, Chang Wang, Stephanie Banakis, Lizzette Pérez-Pérez, Guomiao Shen, George Jour, Peter Meyn, Joseph Carpenito, Xiuxiu Liu, Kun Ji, Destiny Collazo, Anthony Labarbiera, Nancy Amoroso, Shari B Brosnahan, Vikramjit Mukherjee, David Kaufman, Elisa Estenssoro, Anthony Lubinsky, Deepak Pradhan, Daniel H Sterman, Michael Weiden, Adriana Heguy, Laura Evans, Timothy M Uyeki, Jose C Clemente, Emmie de Wit, Ann Marie Schmidt, Bo Shopsin, Ludovic Desvignes, Chan Wang, Huilin Li, Bin Zhang, Christian V Forst, Shohei Koide, Kenneth A Stapleford, Kamal M Khanna, Elodie Ghedin, Leopoldo N Segal
Microbial signatures in the lower airways of mechanically ventilated COVID-19 patients associated with poor clinical outcome. Nature microbiology 6 (10) (2021)
Julien Oury, Wei Zhang, Nadia Leloup, Akiko Koide, Alexis D Corrado, Gayatri Ketavarapu, Takamitsu Hattori, Shohei Koide, Steven J Burden
Mechanism of disease and therapeutic rescue of Dok7 congenital myasthenia. Nature 595 (7867) (2021)
Akiko Koide, Tatyana Panchenko, Chan Wang, Sara A Thannickal, Larizbeth A Romero, Kai Wen Teng, Francesca-Zhoufan Li, Padma Akkappedi, Alexis D Corrado, Jessica Caro, Catherine S Diefenbach, Marie I Samanovic, Mark J Mulligan, Takamitsu Hattori, Kenneth A Stapleford, Huilin Li, Shohei Koide
Two-dimensional multiplexed assay for rapid and deep SARS-CoV-2 serology profiling and for machine learning prediction of neutralization capacity. bioRxiv : the preprint server for biology (2021)
Catherine S Diefenbach, Jessica Caro, Akiko Koide, Michael Grossbard, Judith D Goldberg, Bruce Raphael, Kenneth Hymes, Tibor Moskovits, Maxim Kreditor, David Kaminetzky, Shella Saint Fleur-Lominy, Jun Choi, Sara A Thannickal, Kenneth A Stapleford, Shohei Koide
Impaired Humoral Immunity to SARS-CoV-2 Vaccination in Non-Hodgkin Lymphoma and CLL Patients. medRxiv : the preprint server for health sciences (2021)
Ellie N Ivanova, Joseph C Devlin, Terkild Brink Buus, Shohei Koide, Amber Cornelius, Marie I Samanovic, Alberto Herrera, Chenzhen Zhang, Ludovic Desvignes, Niels Odum, Robert Ulrich, Mark J Mulligan, Shohei Koide, Kelly V Ruggles, Ramin Sedaghat Herati, Sergei B Koralov
Discrete immune response signature to SARS-CoV-2 mRNA vaccination versus infection. medRxiv : the preprint server for health sciences (2021)
Kai Wen Teng, Steven T Tsai, Takamitsu Hattori, Carmine Fedele, Akiko Koide, Chao Yang, Xuben Hou, Yingkai Zhang, Benjamin G Neel, John P O'Bryan, Shohei Koide
Selective and noncovalent targeting of RAS mutants for inhibition and degradation. Nature communications 12 (1) (2021)
Sarah E Garnish, Yanxiang Meng, Akiko Koide, Jarrod John Sandow, Eric Denbaum, Annette V Jacobsen, Wayland Yeung, André L Samson, Christopher R Horne, Cheree Fitzgibbon, Samuel N Young, Phoebe P C Smith, Andrew Ian Webb, Emma J Petrie, Joanne M Hildebrand, Natarajan Kannan, Peter E Czabotar, Shohei Koide, James G Murphy
Conformational interconversion of MLKL and disengagement from RIPK3 precede cell death by necroptosis. Nature communications 12 (1) (2021)
Emma J Petrie, Richard W Birkinshaw, Akiko Koide, Eric Denbaum, Joanne M Hildebrand, Sarah E Garnish, Katherine A Davies, Jarrod J Sandow, Andre L Samson, Xavier Gavin, Cheree Fitzgibbon, Samuel N Young, Patrick J Hennessy, Phoebe P C Smith, Andrew Ian Webb, Peter E Czabotar, Shohei Koide, James G Murphy
Identification of MLKL membrane translocation as a checkpoint in necroptotic cell death using Monobodies. Proceedings of the National Academy of Sciences of the United States of America 117 (15) (2020)
Ali A Kermani, Christian B Macdonald, Olive E Burata, B Ben Koff, Akiko Koide, Eric Denbaum, Shohei Koide, Randy B Stockbridge
The structural basis of promiscuity in small multidrug resistance transporters. Nature communications 11 (1) (2020)
Ruth Röck, Johanna E Mayrhofer, Omar Torres-Quesada, Florian Enzler, Andrea Raffeiner, Philipp Raffeiner, Andreas Feichtner, Roland G Huber, Shohei Koide, Susan S Taylor, Jakob Troppmair, Eduard Stefan
BRAF inhibitors promote intermediate BRAF(V600E) conformations and binary interactions with activated RAS. Science advances 5 (8) (2019)
Shohei Koide
Repurposing off-the-shelf antihelix antibodies for enabling structural biology. Proceedings of the National Academy of Sciences of the United States of America 116 (36) (2019)
Shun-Ichi Tanaka, Tetsuya Takahashi, Akiko Koide, Riki Iwamoto, Satoshi Koikeda, Shohei Koide
Monobody-Mediated Alteration of Lipase Substrate Specificity. ACS chemical biology 13 (6) (2018)
Ankit Gupta, Jing Xu, Shirley Lee, Steven T Tsai, Bo Zhou, Kohei Kurosawa, Michael S Werner, Akiko Koide, Alexander J Ruthenburg, Yali Dou, Shohei Koide
Facile target validation in an animal model with intracellularly expressed monobodies. Nature chemical biology 14 (9) (2018)
Nicholas B Last, Randy B Stockbridge, Ashley E Wilson, Tania Shane, Ludmila Kolmakova-Partensky, Akiko Koide, Shohei Koide, Christopher Miller
A CLC-type F-/H+ antiporter in ion-swapped conformations. Nature structural & molecular biology 25 (7) (2018)
Fern Sha, Gabriel Salzman, Ankit Gupta, Shohei Koide
Monobodies and other synthetic binding proteins for expanding protein science. Protein science : a publication of the Protein Society 26 (5) (2017)
Shahir S Rizk, Somnath Mukherjee, Akiko Koide, Shohei Koide, Anthony A Kossiakoff
Targeted rescue of cancer-associated IDH1 mutant activity using an engineered synthetic antibody. Scientific reports 7 (1) (2017)
Sina Reckel, Charlotte Gehin, Delphine Tardivon, Sandrine Georgeon, Tim Kükenshöner, Frank Löhr, Akiko Koide, Lena Buchner, Alejandro Panjkovich, Aline Reynaud, Sara Pinho, Barbara Gerig, Dmitri Svergun, Florence Pojer, Peter Güntert, Volker Dötsch, Shohei Koide, Anne-Claude Gavin, Oliver Hantschel
Structural and functional dissection of the DH and PH domains of oncogenic Bcr-Abl tyrosine kinase. Nature communications 8 (1) (2017)

Shohei Koide.css-eqlu8i{font-size:small;padding-left:4px;} (S Koide, Akiko Koide)

Publication Activity (10 Years)

Top Topics

Top Venues

Shohei Koide (S Koide, Akiko Koide)