Alexander T Pearson (Alexander Pearson)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 44

Top Venues

NPJ precision oncology

Nature communications

NPJ breast cancer

Nature cancer

University of Chicago

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Chicago

United States

Assistant Professor :: Medicine

Publications

Asim Dhungana, Augustin Vannier, Fangyuan Zhao, Jincong Q Freeman, Poornima Saha, Megan Sullivan, Katharine Yao, Elbio M Flores, Olufunmilayo I Olopade, Alexander T Pearson, Dezheng Huo, Frederick M Howard
Development and validation of a clinical breast cancer tool for accurate prediction of recurrence. NPJ breast cancer 10 (1) (2024)
Thomas F Cyberski, Alka Singh, Michael Korzinkin, Vasudha Mishra, Frank W Pun, Le Shen, Claudia Wing, Xiangying Cheng, Brandon Baird, Yuxuan Miao, Moshe Elkabets, Sara E Kochanny, Wenji Guo, Emma Dyer, Alexander T Pearson, Aditya Juloori, Mark Lingen, Grayson Cole, Alex Zhavoronkov, Nishant Agrawal, Evgeny Izumchenko, Ari J Rosenberg
Acquired resistance to immunotherapy and chemoradiation in MYC amplified head and neck cancer. NPJ precision oncology 8 (1) (2024)
Mark Applebaum, Siddhi Ramesh, Emma Dyer, Monica Pomaville, Kristina Doytcheva, James Dolezal, Sara Kochanny, Rachel Terhaar, Casey Mehrhoff, Kritika Patel, Jacob Brewer, Benjamin Kusswurm, Arlene Naranjo, Hiroyuki Shimada, Elizabeth A Sokol, Susan L Cohn, Rani George, Alexander T Pearson
Artificial intelligence-based morphologic classification and molecular characterization of neuroblastic tumors from digital histopathology. Research square (2024)
Asim Dhungana, Augustin Vannier, Fangyuan Zhao, Jincong Q Freeman, Poornima Saha, Megan Sullivan, Katharine Yao, Elbio M Flores, Olufunmilayo I Olopade, Alexander T Pearson, Dezheng Huo, Frederick M Howard
Development and validation of a clinical breast cancer tool for accurate prediction of recurrence. NPJ breast cancer 10 (1) (2024)
Siddhi Ramesh, Teague Tomesh, Samantha J Riesenfeld, Frederic T Chong, Alexander T Pearson
Quantum computing for oncology. Nature cancer 5 (6) (2024)
Thomas F Cyberski, Alka Singh, Michael Korzinkin, Vasudha Mishra, Frank W Pun, Le Shen, Claudia Wing, Xiangying Cheng, Brandon Baird, Yuxuan Miao, Moshe Elkabets, Sara E Kochanny, Wenji Guo, Emma Dyer, Alexander T Pearson, Aditya Juloori, Mark Lingen, Grayson Cole, Alex Zhavoronkov, Nishant Agrawal, Evgeny Izumchenko, Ari J Rosenberg
Acquired resistance to immunotherapy and chemoradiation in MYC amplified head and neck cancer. NPJ precision oncology 8 (1) (2024)
Mark Applebaum, Siddhi Ramesh, Emma Dyer, Monica Pomaville, Kristina Doytcheva, James Dolezal, Sara Kochanny, Rachel Terhaar, Casey Mehrhoff, Kritika Patel, Jacob Brewer, Benjamin Kusswurm, Arlene Naranjo, Hiroyuki Shimada, Elizabeth A Sokol, Susan L Cohn, Rani George, Alexander T Pearson
Artificial intelligence-based morphologic classification and molecular characterization of neuroblastic tumors from digital histopathology. Research square (2024)
Frederick M Howard, Anran Li, Mark F Riffon, Elizabeth Garrett-Mayer, Alexander T Pearson
Characterizing the Increase in Artificial Intelligence Content Detection in Oncology Scientific Abstracts From 2021 to 2023. JCO clinical cancer informatics 8 (2024)
Mark Applebaum, Siddhi Ramesh, Emma Dyer, Monica Pomaville, Kristina Doytcheva, James Dolezal, Sara Kochanny, Rachel Terhaar, Casey Mehrhoff, Kritika Patel, Jacob Brewer, Benjamin Kusswurm, Arlene Naranjo, Hiroyuki Shimada, Elizabeth A Sokol, Susan L Cohn, Rani George, Alexander T Pearson
Artificial intelligence-based morphologic classification and molecular characterization of neuroblastic tumors from digital histopathology. Research square (2024)
Siddhi Ramesh, Teague Tomesh, Samantha J Riesenfeld, Frederic T Chong, Alexander T Pearson
Quantum computing for oncology. Nature cancer 5 (6) (2024)
Asim Dhungana, Augustin Vannier, Fangyuan Zhao, Jincong Q Freeman, Poornima Saha, Megan Sullivan, Katharine Yao, Elbio M Flores, Olufunmilayo I Olopade, Alexander T Pearson, Dezheng Huo, Frederick M Howard
Development and validation of a clinical breast cancer tool for accurate prediction of recurrence. NPJ breast cancer 10 (1) (2024)
Thomas F Cyberski, Alka Singh, Michael Korzinkin, Vasudha Mishra, Frank W Pun, Le Shen, Claudia Wing, Xiangying Cheng, Brandon Baird, Yuxuan Miao, Moshe Elkabets, Sara E Kochanny, Wenji Guo, Emma Dyer, Alexander T Pearson, Aditya Juloori, Mark Lingen, Grayson Cole, Alex Zhavoronkov, Nishant Agrawal, Evgeny Izumchenko, Ari J Rosenberg
Acquired resistance to immunotherapy and chemoradiation in MYC amplified head and neck cancer. NPJ precision oncology 8 (1) (2024)
Asim Dhungana, Augustin Vannier, Fangyuan Zhao, Jincong Q Freeman, Poornima Saha, Megan Sullivan, Katharine Yao, Elbio M Flores, Olufunmilayo I Olopade, Alexander T Pearson, Dezheng Huo, Frederick M Howard
Development and validation of a clinical breast cancer tool for accurate prediction of recurrence. NPJ breast cancer 10 (1) (2024)
Siddhi Ramesh, Teague Tomesh, Samantha J Riesenfeld, Frederic T Chong, Alexander T Pearson
Quantum computing for oncology. Nature cancer (2024)
Lucas Lacerda de Souza, Flávia Sirotheau Correa Pontes, Anna Luíza Damaceno Araújo, Márcio Ajudarte Lopes, Pablo Agustin Vargas, Syed Ali Khurram, Luiz Paulo Kowalski, Harim Tavares Dos Santos, Saman Warnakulasuriya, James M Dolezal, Alexander T Pearson, Alan Roger Dos Santos Silva
Machine learning for detection and classification of oral potentially malignant disorders: A conceptual review. Journal of oral pathology & medicine : official publication of the International Association of Oral Pathologists and the American Academy of Oral Pathology (2023)
Anna Luíza Damaceno Araújo, Viviane Mariano da Silva, Matheus Cardoso Moraes, Henrique Alves de Amorim, Flávia Sirotheau Correa Pontes, Maria Sissa Pereira Sant'Ana, Ricardo Alves Mesquita, Bruno Augusto Linhares Almeida Mariz, Helder Antonio Rebelo Pontes, Lucas Lacerda de Souza, Cristina Saldivia-Siracusa, Syed Ali Khurram, Alexander T Pearson, Manoela Domingues Martins, Márcio Ajudarte Lopes, Pablo Agustin Vargas, Luiz Paulo Kowalski, Alan Roger Dos Santos Silva
The use of deep learning state-of-the-art architectures for oral epithelial dysplasia grading: A comparative appraisal. Journal of oral pathology & medicine : official publication of the International Association of Oral Pathologists and the American Academy of Oral Pathology (2023)
Jakob Nikolas Kather, Lara R Heij, Heike I Grabsch, Chiara Loeffler, Amelie Echle, Hannah Sophie Muti, Jeremias Krause, Jan M Niehues, Kai A J Sommer, Peter Bankhead, Loes F S Kooreman, Jefree J Schulte, Nicole Anne Cipriani, Roman David Bülow, Peter Boor, Nadina Ortiz-Brüchle, Andrew M Hanby, Valerie Speirs, Sara Kochanny, Akash Patnaik, Andrew Srisuwananukorn, Hermann Brenner, Michael Hoffmeister, Piet A van den Brandt, Dirk Jäger, Christian Trautwein, Alexander T Pearson, Tom Luedde
Author Correction: Pan-cancer image-based detection of clinically actionable genetic alterations. Nature cancer 1 (11) (2023)
Lucas Lacerda de Souza, Flávia Sirotheau Correa Pontes, Anna Luíza Damaceno Araújo, Márcio Ajudarte Lopes, Pablo Agustin Vargas, Syed Ali Khurram, Luiz Paulo Kowalski, Harim Tavares Dos Santos, Saman Warnakulasuriya, James M Dolezal, Alexander T Pearson, Alan Roger Dos Santos Silva
Machine learning for detection and classification of oral potentially malignant disorders: A conceptual review. Journal of oral pathology & medicine : official publication of the International Association of Oral Pathologists and the American Academy of Oral Pathology 52 (3) (2023)
James M Dolezal, Rachelle Wolk, Hanna M Hieromnimon, Frederick M Howard, Andrew Srisuwananukorn, Dmitry Karpeyev, Siddhi Ramesh, Sara Kochanny, Jung Woo Kwon, Meghana Agni, Richard C Simon, Chandni Desai, Raghad Kherallah, Tung D Nguyen, Jefree J Schulte, Kimberly Cole, Galina F Khramtsova, Marina Chiara Garassino, Aliya N Husain, Huihua Li, Robert L Grossman, Nicole A Cipriani, Alexander T Pearson
Deep learning generates synthetic cancer histology for explainability and education. NPJ precision oncology 7 (1) (2023)
Oliver Lester Saldanha, Chiara M L Loeffler, Jan Moritz Niehues, Marko van Treeck, Tobias Paul Seraphin, Katherine Jane Hewitt, Didem Cifci, Gregory Patrick Veldhuizen, Siddhi Ramesh, Alexander T Pearson, Jakob Nikolas Kather
Self-supervised attention-based deep learning for pan-cancer mutation prediction from histopathology. NPJ precision oncology 7 (1) (2023)
Oliver Lester Saldanha, Chiara M L Loeffler, Jan Moritz Niehues, Marko van Treeck, Tobias Paul Seraphin, Katherine Jane Hewitt, Didem Cifci, Gregory Patrick Veldhuizen, Siddhi Ramesh, Alexander T Pearson, Jakob Nikolas Kather
Self-supervised attention-based deep learning for pan-cancer mutation prediction from histopathology. NPJ precision oncology 7 (1) (2023)
Lucas Lacerda de Souza, Flávia Sirotheau Correa Pontes, Anna Luíza Damaceno Araújo, Márcio Ajudarte Lopes, Pablo Agustin Vargas, Syed Ali Khurram, Luiz Paulo Kowalski, Harim Tavares Dos Santos, Saman Warnakulasuriya, James M Dolezal, Alexander T Pearson, Alan Roger Dos Santos Silva
Machine learning for detection and classification of oral potentially malignant disorders: A conceptual review. Journal of oral pathology & medicine : official publication of the International Association of Oral Pathologists and the American Academy of Oral Pathology 52 (3) (2023)
Frederick M Howard, James M Dolezal, Sara Kochanny, Galina F Khramtsova, Jasmine Vickery, Andrew Srisuwananukorn, Anna Woodard, Nan Chen, Rita Nanda, Charles M Perou, Olufunmilayo I Olopade, Dezheng Huo, Alexander T Pearson
Integration of clinical features and deep learning on pathology for the prediction of breast cancer recurrence assays and risk of recurrence. NPJ breast cancer 9 (1) (2023)
Lucas Lacerda de Souza, Flávia Sirotheau Correa Pontes, Anna Luíza Damaceno Araújo, Márcio Ajudarte Lopes, Pablo Agustin Vargas, Syed Ali Khurram, Luiz Paulo Kowalski, Harim Tavares Dos Santos, Saman Warnakulasuriya, James M Dolezal, Alexander T Pearson, Alan Roger Dos Santos Silva
Machine learning for detection and classification of oral potentially malignant disorders: A conceptual review. Journal of oral pathology & medicine : official publication of the International Association of Oral Pathologists and the American Academy of Oral Pathology 52 (3) (2023)
Oliver Lester Saldanha, Chiara M L Loeffler, Jan Moritz Niehues, Marko van Treeck, Tobias Paul Seraphin, Katherine Jane Hewitt, Didem Cifci, Gregory Patrick Veldhuizen, Siddhi Ramesh, Alexander T Pearson, Jakob Nikolas Kather
Self-supervised attention-based deep learning for pan-cancer mutation prediction from histopathology. NPJ precision oncology 7 (1) (2023)
Frederick M Howard, Alexander T Pearson, Rita Nanda
Clinical trials of immunotherapy in triple-negative breast cancer. Breast cancer research and treatment 195 (1) (2022)
Manijeh Goldberg, Aaron Manzi, Peter Conway, Stefanie Cantin, Vasudha Mishra, Alka Singh, Alexander T Pearson, Eric R Goldberg, Sam Goldberger, Benjamin Flaum, Rifat Hasina, Nyall R London, Gary L Gallia, Chetan Bettegowda, Sonya E O'Neill, Erkin Aydin, Alex Zhavoronkov, Anxo Vidal, Atenea Soto, Maria Jose Alonso, Ari J Rosenberg, Mark W Lingen, Anil D'Cruz, Nishant Agrawal, Evgeny Izumchenko
A nanoengineered topical transmucosal cisplatin delivery system induces anti-tumor response in animal models and patients with oral cancer. Nature communications 13 (1) (2022)
Ari J Rosenberg, Nishant Agrawal, Alexander T Pearson, Zhen Gooi, Elizabeth Blair, Louis Portugal, John F Cursio, Aditya Juloori, Jeffrey Chin, Kathryn Rouse, Victoria M Villaflor, Tanguy Y Seiwert, Evgeny Izumchenko, Mark W Lingen, Daniel J Haraf, Everett E Vokes
Phase I study of nab-paclitaxel-based induction followed by nab-paclitaxel-based concurrent chemotherapy and re-irradiation in previously treated head and neck squamous cell carcinoma. British journal of cancer 127 (8) (2022)
Hanna M Hieromnimon, Alexander T Pearson
Ovarian cancer through a multi-modal lens. Nature cancer 3 (6) (2022)
Narmin Ghaffari Laleh, Chiara Maria Lavinia Loeffler, Julia Grajek, Kateřina Staňková, Alexander T Pearson, Hannah Sophie Muti, Christian Trautwein, Heiko Enderling, Jan Poleszhuk, Jakob Nikolas Kather
Classical mathematical models for prediction of response to chemotherapy and immunotherapy. PLoS computational biology 18 (2) (2022)
Manijeh Goldberg, Aaron Manzi, Amritpreet Birdi, Brandon Laporte, Peter Conway, Stefanie Cantin, Vasudha Mishra, Alka Singh, Alexander T Pearson, Eric R Goldberg, Sam Goldberger, Benjamin Flaum, Rifat Hasina, Nyall R London, Gary L Gallia, Chetan Bettegowda, Simon Young, Vlad Sandulache, James Melville, Jonathan Shun, Sonya E O'Neill, Erkin Aydin, Alex Zhavoronkov, Anxo Vidal, Atenea Soto, Maria Jose Alonso, Ari J Rosenberg, Mark W Lingen, Anil D'Cruz, Nishant Agrawal, Evgeny Izumchenko
Author Correction: A nanoengineered topical transmucosal cisplatin delivery system induces anti-tumor response in animal models and patients with oral cancer. Nature communications 13 (1) (2022)
James M Dolezal, Andrew Srisuwananukorn, Dmitry Karpeyev, Siddhi Ramesh, Sara Kochanny, Brittany Cody, Aaron S Mansfield, Sagar Rakshit, Radhika Bansal, Melanie C Bois, Aaron O Bungum, Jefree J Schulte, Everett E Vokes, Marina Chiara Garassino, Aliya N Husain, Alexander T Pearson
Uncertainty-informed deep learning models enable high-confidence predictions for digital histopathology. Nature communications 13 (1) (2022)
Manijeh Goldberg, Aaron Manzi, Amritpreet Birdi, Brandon Laporte, Peter Conway, Stefanie Cantin, Vasudha Mishra, Alka Singh, Alexander T Pearson, Eric R Goldberg, Sam Goldberger, Benjamin Flaum, Rifat Hasina, Nyall R London, Gary L Gallia, Chetan Bettegowda, Simon Young, Vlad Sandulache, James Melville, Jonathan Shun, Sonya E O'Neill, Erkin Aydin, Alex Zhavoronkov, Anxo Vidal, Atenea Soto, Maria Jose Alonso, Ari J Rosenberg, Mark W Lingen, Anil D'Cruz, Nishant Agrawal, Evgeny Izumchenko
Author Correction: A nanoengineered topical transmucosal cisplatin delivery system induces anti-tumor response in animal models and patients with oral cancer. Nature communications 13 (1) (2022)
Vasudha Mishra, Alka Singh, Xiangying Chen, Ari J Rosenberg, Alexander T Pearson, Alex Zhavoronkov, Peter A Savage, Mark W Lingen, Nishant Agrawal, Evgeny Izumchenko
Application of liquid biopsy as multi-functional biomarkers in head and neck cancer. British journal of cancer (2021)
Vladimir Naumov, Evgeny Putin, Stefan Pushkov, Ekaterina Kozlova, Konstantin Romantsov, Alexander Kalashnikov, Fedor Galkin, Nina Tihonova, Anastasia Shneyderman, Egor Galkin, Arsenii Zinkevich, Stephanie M Cope, Ramanathan Sethuraman, Tudor I Oprea, Alexander T Pearson, SavaÅŸ Tay, Nishant Agrawal, Alexey Dubovenko, Quentin Vanhaelen, Ivan Ozerov, Alexander Aliper, Evgeny Izumchenko, Alex Zhavoronkov
COVIDomic: A multi-modal cloud-based platform for identification of risk factors associated with COVID-19 severity. PLoS computational biology 17 (7) (2021)
Frederick M Howard, James Dolezal, Sara Kochanny, Jefree J Schulte, Heather Chen, Lara Rosaline Heij, Dezheng Huo, Rita Nanda, Olufunmilayo I Olopade, Jakob N Kather, Nicole Anne Cipriani, Robert L Grossman, Alexander T Pearson
The impact of site-specific digital histology signatures on deep learning model accuracy and bias. Nature communications 12 (1) (2021)
Alexander T Pearson, Everett E Vokes
Is This the Dawn of Precision Oncology in Head and Neck Cancer? Journal of clinical oncology : official journal of the American Society of Clinical Oncology 39 (17) (2021)
Sara E Kochanny, Alexander T Pearson
Academics as leaders in the cancer artificial intelligence revolution. Cancer 127 (5) (2020)
Fereshteh Nazari, Alexandra E Herzog, Jacques E Nör, Alexander T Pearson, Trachette L Jackson
In Silico Models Accurately Predict In Vivo Response for IL6 Blockade in Head and Neck Cancer. Cancer research 80 (7) (2020)
Rudi Agius, Christian Brieghel, Michael Asger Andersen, Alexander T Pearson, Bruno Ledergerber, Alessandro Cozzi-Lepri, Yoram Louzoun, Christen L Andersen, Jacob Bergstedt, Jakob H von Stemann, Mette Jørgensen, Man-Hung Eric Tang, Magnus Fontes, Jasmin Bahlo, Carmen D Herling, Michael Hallek, Jens Dilling Lundgren, Cameron Ross MacPherson, Jan Larsen, Carsten Utoft Niemann
Machine learning can identify newly diagnosed patients with CLL at high risk of infection. Nature communications 11 (1) (2020)
James M Dolezal, Anna Trzcinska, Chih-Yi Liao, Sara Kochanny, Elizabeth Blair, Nishant Agrawal, Xavier M Keutgen, Peter Angelos, Nicole Anne Cipriani, Alexander T Pearson
Deep learning prediction of BRAF-RAS gene expression signature identifies noninvasive follicular thyroid neoplasms with papillary-like nuclear features. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 34 (5) (2020)
April Andrews, Kristy Warner, Christie Rodriguez-Ramirez, Alexander T Pearson, Felipe Nör, Zhaocheng Zhang, Samuel Kerk, Aditi Kulkarni, Joseph I Helman, John Chad Brenner, Max S Wicha, Shaomeng Wang, Jacques E Nör
Ablation of Cancer Stem Cells by Therapeutic Inhibition of the MDM2-p53 Interaction in Mucoepidermoid Carcinoma. Clinical cancer research : an official journal of the American Association for Cancer Research 25 (5) (2018)
William Y Wang, Alexander T Pearson, Matthew L Kutys, Colin K Choi, Michele A Wozniak, Brendon M Baker, Christopher S Chen
Extracellular matrix alignment dictates the organization of focal adhesions and directs uniaxial cell migration. APL bioengineering 2 (4) (2018)
Fereshteh Nazari, Alexander T Pearson, Jacques Eduardo Nör, Trachette L Jackson
A mathematical model for IL-6-mediated, stem cell driven tumor growth and targeted treatment. PLoS computational biology 14 (1) (2018)

Alexander T Pearson.css-eqlu8i{font-size:small;padding-left:4px;} (Alexander Pearson)

Publication Activity (10 Years)

Top Topics

Top Venues

Alexander T Pearson (Alexander Pearson)