Tudor I Oprea

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 23

Top Venues

Nucleic acids research

Journal of chemical information and modeling

Bioinformatics advances

NAR genomics and bioinformatics

University of New Mexico

Universitatea de Medicina si Farmacie Victor Babes din Timisoara (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of New Mexico Jul 01 2012

United States

Professor of Medicine and Chief, Translational Informatics Division :: Department of Internal Medicine

DTU Institut for Systembiologi Jul 01 2010 - Jun 30 2012

Denmark

Guest Professor :: Systems Biology

University of New Mexico Aug 06 2002 - Jun 30 2012

United States

Professor and Chief, Division of Biocomputing :: Biochemistry and Molecular Biology

AstraZeneca R and D Mölndal Jul 01 2000 - Jul 31 2002

Sweden

Associate Director :: Enabling Science and Technologies

AstraZeneca R and D Mölndal Apr 25 1996 - Jun 30 2000

Sweden

Research Scientist :: Medicinal Chemistry

Education History

Universitatea de Medicina si Farmacie Victor Babes din Timisoara Dec 02 1990 - Jul 15 1992

Romania

PHD :: Physiology

Publications

Luca Cappelletti, Lauren Rekerle, Tommaso Fontana, Peter Hansen, Elena Casiraghi, Vida Ravanmehr, Christopher John Mungall, Jeremy J Yang, Leonard Spranger, Guy Karlebach, J Harry Caufield, Leigh C Carmody, Ben Coleman, Tudor I Oprea, Justin T Reese, Giorgio Valentini, Peter Nick Robinson
Node-degree aware edge sampling mitigates inflated classification performance in biomedical random walk-based graph representation learning. Bioinformatics advances 4 (1) (2024)
Luca Cappelletti, Lauren Rekerle, Tommaso Fontana, Peter Hansen, Elena Casiraghi, Vida Ravanmehr, Christopher John Mungall, Jeremy J Yang, Leonard Spranger, Guy Karlebach, J Harry Caufield, Leigh C Carmody, Ben Coleman, Tudor I Oprea, Justin T Reese, Giorgio Valentini, Peter Nick Robinson
Node-degree aware edge sampling mitigates inflated classification performance in biomedical random walk-based graph representation learning. Bioinformatics advances 4 (1) (2024)
Keith J Kelleher, Timothy K Sheils, Stephen L Mathias, Jeremy J Yang, Vincent T Metzger, Vishal B Siramshetty, Ðắc-Trung Nguyễn, Lars Juhl Jensen, Dušica Vidović, Stephan C Schürer, Jayme Holmes, Karlie R Sharma, Ajay Pillai, Cristian G Bologa, Jeremy S Edwards, Ewy A Math, Tudor I Oprea
Pharos 2023: an integrated resource for the understudied human proteome. Nucleic acids research 51 (D1) (2023)
Keith J Kelleher, Timothy K Sheils, Stephen L Mathias, Jeremy J Yang, Vincent T Metzger, Vishal B Siramshetty, Ðắc-Trung Nguyễn, Lars Juhl Jensen, Dušica Vidović, Stephan C Schürer, Jayme Holmes, Karlie R Sharma, Ajay Pillai, Cristian G Bologa, Jeremy S Edwards, Ewy A Math, Tudor I Oprea
Pharos 2023: an integrated resource for the understudied human proteome. Nucleic acids research 51 (D1) (2023)
Tudor I Oprea, Cristian Bologa
Molecular Complexity: You Know It When You See It. Journal of medicinal chemistry (2023)
Keith J Kelleher, Timothy K Sheils, Stephen L Mathias, Jeremy J Yang, Vincent T Metzger, Vishal B Siramshetty, Ðắc-Trung Nguyễn, Lars Juhl Jensen, Dušica Vidović, Stephan C Schürer, Jayme Holmes, Karlie R Sharma, Ajay Pillai, Cristian G Bologa, Jeremy S Edwards, Ewy A Math, Tudor I Oprea
Pharos 2023: an integrated resource for the understudied human proteome. Nucleic acids research 51 (D1) (2023)
Keith J Kelleher, Timothy K Sheils, Stephen L Mathias, Jeremy J Yang, Vincent T Metzger, Vishal B Siramshetty, Ðắc-Trung Nguyễn, Lars Juhl Jensen, Dušica Vidović, Stephan C Schürer, Jayme Holmes, Karlie R Sharma, Ajay Pillai, Cristian G Bologa, Jeremy S Edwards, Ewy A Math, Tudor I Oprea
Pharos 2023: an integrated resource for the understudied human proteome. Nucleic acids research 51 (D1) (2023)
John Erol Evangelista, Daniel J B Clarke, Zhuorui Xie, Giacomo B Marino, Vivian Utti, Sherry L Jenkins, Taha Mohseni Ahooyi, Cristian G Bologa, Jeremy J Yang, Jessica L Binder, Praveen Kumar, Christophe Gerard Lambert, Jeffery S Grethe, Eric Wenger, Deanne Taylor, Tudor I Oprea, Bernard de Bono, Avi Ma'ayan
Toxicology knowledge graph for structural birth defects. Communications medicine 3 (1) (2023)
Keith J Kelleher, Timothy K Sheils, Stephen L Mathias, Jeremy J Yang, Vincent T Metzger, Vishal B Siramshetty, Ðắc-Trung Nguyễn, Lars Juhl Jensen, Dušica Vidović, Stephan C Schürer, Jayme Holmes, Karlie R Sharma, Ajay Pillai, Cristian G Bologa, Jeremy S Edwards, Ewy A Math, Tudor I Oprea
Pharos 2023: an integrated resource for the understudied human proteome. Nucleic acids research 51 (D1) (2023)
Sorin Avram, Thomas B Wilson, Ramona Curpan, Liliana Halip, Ana Borota, Alina Bora, Cristian G Bologa, Jayme Holmes, Jeffrey Knockel, Jeremy J Yang, Tudor I Oprea
DrugCentral 2023 extends human clinical data and integrates veterinary drugs. Nucleic acids research (2022)
Gergely Zahoránszky-Kőhalmi, Vishal B Siramshetty, Praveen Kumar, Manideep Gurumurthy, Busola Grillo, Biju Mathew, Dimitrios Metaxatos, Mark Backus, Tim Mierzwa, Reid Simon, Ivan Grishagin, Laura Brovold, Ewy A Math, Matthew D Hall, Samuel G Michael, Alexander G Godfrey, Jordi Mestres, Lars Juhl Jensen, Tudor I Oprea
A Workflow of Integrated Resources to Catalyze Network Pharmacology Driven COVID-19 Research. Journal of chemical information and modeling 62 (3) (2022)
LynnMarie Jarratt, Jenny Situ, Rachel D King, Estefania Montanez Ramos, Hannah Groves, Ryen Ormesher, Melissa Cossé, Alyse Raboff, Avanika Mahajan, Jennifer Thompson, Randy F Ko, Samantha Paltrow-Krulwich, Allison Price, Ariel May-Ling Hurwitz, Timothy CampBell, Lauren T Epler, Fiona Nguyen, Emma Wolinsky, Morgan Edwards-Fligner, Jolene Lobo, Danielle Rivera, Jens Langsjoen, Lori Sloane, Ingrid Hendrix, Elly O Munde, Clinton O Onyango, Perez K Olewe, Samuel B Anyona, Alexandra V Yingling, Nicolas Raymond Lauve, Praveen Kumar, Shawn Stoicu, Anastasiya Nestsiarovich, Cristian G Bologa, Tudor I Oprea, Kristine Tollestrup, Orrin B Myers, Mari Anixter, Douglas J Perkins, Christophe Gerard Lambert
A Comprehensive COVID-19 Daily News and Medical Literature Briefing to Inform Health Care and Policy in New Mexico: Implementation Study. JMIR medical education 8 (1) (2022)
Jessica Binder, Oleg Ursu, Cristian G Bologa, Shanya Jiang, Nicole M Maphis, Somayeh Dadras, Devon Chisholm, Jason P Weick, Orrin Myers, Praveen Kumar, Jeremy J Yang, Kiran Bhaskar, Tudor I Oprea
Machine learning prediction and tau-based screening identifies potential Alzheimer's disease genes relevant to immunity. Communications biology 5 (1) (2022)
Dhouha Grissa, Alexander Junge, Tudor I Oprea, Lars Juhl Jensen
Diseases 2.0: a weekly updated database of disease-gene associations from text mining and data integration. Database : the journal of biological databases and curation 2022 (2022)
Anna Cichońska, Balaguru Ravikumar, Robert J Allaway, Fangping Wan, Sungjoon Park, Oleksandr Isaev, Shuya Li, Michael Mason, Andrew Lamb, Ziaurrehman Tanoli, Minji Jeon, Sunkyu Kim, Mariya Popova, Stephen J Capuzzi, Jianyang Zeng, Kristen Dang, Gregory Koytiger, Jaewoo Kang, Carrow I Wells, Timothy M Willson, null null, Tudor I Oprea, Avner Schlessinger, David Harold Drewry, Gustavo Stolovitzky, Krister Wennerberg, Justin Guinney, Tero Aittokallio
Crowdsourced mapping of unexplored target space of kinase inhibitors. Nature communications 12 (1) (2021)
Vladimir Naumov, Evgeny Putin, Stefan Pushkov, Ekaterina Kozlova, Konstantin Romantsov, Alexander Kalashnikov, Fedor Galkin, Nina Tihonova, Anastasia Shneyderman, Egor Galkin, Arsenii Zinkevich, Stephanie M Cope, Ramanathan Sethuraman, Tudor I Oprea, Alexander T Pearson, SavaÅŸ Tay, Nishant Agrawal, Alexey Dubovenko, Quentin Vanhaelen, Ivan Ozerov, Alexander Aliper, Evgeny Izumchenko, Alex Zhavoronkov
COVIDomic: A multi-modal cloud-based platform for identification of risk factors associated with COVID-19 severity. PLoS computational biology 17 (7) (2021)
Vida Ravanmehr, Hannah Blau, Luca Cappelletti, Tommaso Fontana, Leigh Carmody, Ben Coleman, Joshy George, Justin Reese, Marcin Joachimiak, Giovanni Bocci, Peter Hansen, Carol J Bult, Jens Rueter, Elena Casiraghi, Giorgio Valentini, Christopher John Mungall, Tudor I Oprea, Peter Nick Robinson
Supervised learning with word embeddings derived from PubMed captures latent knowledge about protein kinases and cancer. NAR genomics and bioinformatics 3 (4) (2021)
Alex Zhavoronkov, Quentin Vanhaelen, Tudor I Oprea
Will Artificial Intelligence for Drug Discovery Impact Clinical Pharmacology? Clinical pharmacology and therapeutics 107 (4) (2020)
Sorin Avram, Ramona Curpan, Liliana Halip, Alina Bora, Tudor I Oprea
Off-Patent Drug Repositioning. Journal of chemical information and modeling 60 (12) (2020)
Govinda Kc, Giovanni Bocci, Srijan Verma, Mahmudulla Hassan, Jayme Holmes, Jeremy Yang, Suman Sirimulla, Tudor I Oprea
REDIAL-2020: A Suite of Machine Learning Models to Estimate Anti-SARS-CoV-2 Activities. ChemRxiv : the preprint server for chemistry (2020)
Erik Tambuyzer, Benjamin Vandendriessche, Christopher P Austin, Philip J Brooks, Kristina Larsson, Katherine I Miller Needleman, James Valentine, Kay E Davies, Stephen C Groft, Robert Preti, Tudor I Oprea, Marco Prunotto
Therapies for rare diseases: therapeutic modalities, progress and challenges ahead. Nature reviews. Drug discovery 19 (2) (2019)
Tudor I Oprea
Exploring the dark genome: implications for precision medicine. Mammalian genome : official journal of the International Mammalian Genome Society 30 (7-8) (2019)
Miki Akamatsu, Tudor I Oprea
Obituary: Toshio Fujita, QSAR pioneer. Journal of computer-aided molecular design 31 (11) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Tudor I Oprea