SavaÅŸ Tay (Savaş Tay, Savas Tay)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 27

Top Topics

Respiratory Syndrome Coronavirus

Top Venues

Research square

PLoS computational biology

Science advances

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Junjie Xia, Hoang Van Phan, Luke Vistain, Mengjie Chen, Aly A Khan, SavaÅŸ Tay
Computational prediction of protein interactions in single cells by proximity sequencing. PLoS computational biology 20 (3) (2024)
Junjie Xia, Hoang Van Phan, Luke Vistain, Mengjie Chen, Aly A Khan, SavaÅŸ Tay
Computational prediction of protein interactions in single cells by proximity sequencing. PLoS computational biology 20 (3) (2024)
Junjie Xia, Hoang Van Phan, Luke Vistain, Mengjie Chen, Aly A Khan, SavaÅŸ Tay
Computational prediction of protein interactions in single cells by proximity sequencing. PLoS computational biology 20 (3) (2024)
Junjie Xia, Hoang Van Phan, Luke Vistain, Mengjie Chen, Aly A Khan, SavaÅŸ Tay
Computational prediction of protein interactions in single cells by proximity sequencing. PLoS computational biology 20 (3) (2024)
Junjie Xia, Hoang Van Phan, Luke Vistain, Mengjie Chen, Aly A Khan, SavaÅŸ Tay
Computational prediction of protein interactions in single cells by proximity sequencing. PLoS computational biology 20 (3) (2024)
Luke Vistain, Bijentimala Keisham, Junjie Xia, Hoang Van Phan, SavaÅŸ Tay
Proximity sequencing for the detection of mRNA, extracellular proteins and extracellular protein complexes in single cells. Nature protocols (2024)
Florian Full, Stephanie Walter, Eva Neugebauer, Jiang Tan, Nir Drayman, Vedran Franke, SavaÅŸ Tay, Markus Landthaler, Altuna Akalin, Armin Ensser, Emanuel Wyler
Herpesviruses mimic zygotic genome activation to promote viral replication. Research square (2023)
Florian Full, Stephanie Walter, Eva Neugebauer, Jiang Tan, Nir Drayman, Vedran Franke, SavaÅŸ Tay, Markus Landthaler, Altuna Akalin, Armin Ensser, Emanuel Wyler
Herpesviruses mimic zygotic genome activation to promote viral replication. Research square (2023)
Florian Full, Stephanie Walter, Eva Neugebauer, Jiang Tan, Nir Drayman, Vedran Franke, SavaÅŸ Tay, Markus Landthaler, Altuna Akalin, Armin Ensser, Emanuel Wyler
Herpesviruses mimic zygotic genome activation to promote viral replication. Research square (2023)
Junjie Xia, Hoang Van Phan, Luke Vistain, Mengjie Chen, Aly A Khan, SavaÅŸ Tay
Computational prediction of protein interactions on single cells by proximity sequencing. bioRxiv : the preprint server for biology (2023)
Florian Full, Stephanie Walter, Eva Neugebauer, Jiang Tan, Nir Drayman, Vedran Franke, SavaÅŸ Tay, Markus Landthaler, Altuna Akalin, Armin Ensser, Emanuel Wyler
Herpesviruses mimic zygotic genome activation to promote viral replication. Research square (2023)
Florian Full, Stephanie Walter, Eva Neugebauer, Jiang Tan, Nir Drayman, Vedran Franke, SavaÅŸ Tay, Markus Landthaler, Altuna Akalin, Armin Ensser, Emanuel Wyler
Herpesviruses mimic zygotic genome activation to promote viral replication. Research square (2023)
Luke Vistain, Hoang Van Phan, Bijentimala Keisham, Christian Jordi, Mengjie Chen, Sai T Reddy, SavaÅŸ Tay
Quantification of extracellular proteins, protein complexes and mRNAs in single cells by proximity sequencing. Nature methods 19 (12) (2022)
Yadi Zhou, Yuan Liu, Shagun Gupta, Mauricio I Paramo, Yuan Hou, Chengsheng Mao, Yuan Luo, Julius Judd, Shayne D Wierbowski, Marta Bertolotti, Mriganka Nerkar, Lara Jehi, Nir Drayman, Vlad Nicolaescu, Haley Gula, SavaÅŸ Tay, Glenn Randall, Peihui Wang, John T Lis, Cédric Feschotte, Serpil C Erzurum, Feixiong Cheng, Haiyuan Yu
A comprehensive SARS-CoV-2-human protein-protein interactome reveals COVID-19 pathobiology and potential host therapeutic targets. Nature biotechnology (2022)
Long Chi Nguyen, Dongbo Yang, Vlad Nicolaescu, Thomas J Best, Haley Gula, Divyasha Saxena, Jon D Gabbard, Shao-Nong Chen, Takashi Ohtsuki, John Brent Friesen, Nir Drayman, Adil Mohamed, Christopher Dann, Diane Silva, Lydia Robinson-Mailman, Andrea Valdespino, Letícia Stock, Eva Suárez, Krysten A Jones, Saara-Anne Azizi, Jennifer K Demarco, William E Severson, Charles D Anderson, James Michael Millis, Bryan C Dickinson, SavaÅŸ Tay, Scott A Oakes, Guido F Pauli, Kenneth E Palmer, Christopher G Chute, David O Meltzer, Glenn Randall, Marsha Rich Rosner
Cannabidiol inhibits SARS-CoV-2 replication through induction of the host ER stress and innate immune responses. Science advances 8 (8) (2022)
Minjun Son, Tino Frank, Thomas Holst-Hansen, Andrew G Wang, Michael Junkin, Sara Saheb Kashaf, Ala Trusina, SavaÅŸ Tay
Spatiotemporal NF-κB dynamics encodes the position, amplitude, and duration of local immune inputs. Science advances 8 (35) (2022)
Vladimir Naumov, Evgeny Putin, Stefan Pushkov, Ekaterina Kozlova, Konstantin Romantsov, Alexander Kalashnikov, Fedor Galkin, Nina Tihonova, Anastasia Shneyderman, Egor Galkin, Arsenii Zinkevich, Stephanie M Cope, Ramanathan Sethuraman, Tudor I Oprea, Alexander T Pearson, SavaÅŸ Tay, Nishant Agrawal, Alexey Dubovenko, Quentin Vanhaelen, Ivan Ozerov, Alexander Aliper, Evgeny Izumchenko, Alex Zhavoronkov
COVIDomic: A multi-modal cloud-based platform for identification of risk factors associated with COVID-19 severity. PLoS computational biology 17 (7) (2021)
Nir Drayman, Jennifer K Demarco, Krysten A Jones, Saara-Anne Azizi, Heather M Froggatt, Kemin Tan, Natalia Ivanovna Maltseva, Siquan Chen, Vlad Nicolaescu, Steve Dvorkin, Kevin Furlong, Rahul Singh Kathayat, Mason R Firpo, Vincent Mastrodomenico, Emily A Bruce, Madaline M Schmidt, Robert Jedrzejczak, Miguel Angel Muñoz-Alía, Brooke Schuster, Vishnu Nair, Kyu-Yeon Han, Amornrat O'Brien, Anastasia Tomatsidou, Bjoern Meyer, Marco Vignuzzi, Dominique Missiakas, Jason W Botten, Christopher B Brooke, Hyun Lee, Susan C Baker, Bryan C Mounce, Nicholas S Heaton, William E Severson, Kenneth E Palmer, Bryan C Dickinson, Andrzej Joachimiak, Glenn Randall, SavaÅŸ Tay
Masitinib is a broad coronavirus 3CL inhibitor that blocks replication of SARS-CoV-2. Science (New York, N.Y.) 373 (6557) (2021)
Parthiv Patel, Nir Drayman, Ping Liu, Mustafa Bilgic, SavaÅŸ Tay
Computer vision reveals hidden variables underlying NF-κB activation in single cells. Science advances 7 (43) (2021)
Thomas Gajewski, Sherin Rouhani, Jonathan Trujillo, Athalia Pyzer, Jovian Yu, Jessica Fessler, Alexandra Cabanov, Emily Higgs, Kyle Cron, Yuanyuan Zha, Yihao Lu, Jeffrey Bloodworth, Mustafa Abasiyanik, Susan Okrah, Blake Flood, Ken Hatogai, Michael Leung, Apameh Pezeshk, Lara Kozloff, Robin Reschke, Garth Strohbehn, Carolina Soto Chervin, Madan Kumar, Stephen Schrantz, Maria Lucia L Madariaga, Kathleen Beavis, Kiang-Teck Yeo, Randy Sweis, Jeremy Segal, SavaÅŸ Tay, Evgeny Izumchenko, Jeffrey Mueller, Lin Chen
Severe COVID-19 infection is associated with aberrant cytokine production by infected lung epithelial cells rather than by systemic immune dysfunction. Research square (2021)
Hoang Van Phan, Michiel van Gent, Nir Drayman, Anindita Basu, Michaela U Gack, SavaÅŸ Tay
High-throughput RNA sequencing of paraformaldehyde-fixed single cells. Nature communications 12 (1) (2021)
M Fatih Abasıyanık, Krysta S Wolfe, Hoang Van Phan, Jing Lin, Bharathi Laxman, Steven R White, Philip A Verhoef, Gökhan M Mutlu, Bhakti K Patel, SavaÅŸ Tay
Ultrasensitive digital quantification of cytokines and bacteria predicts septic shock outcomes. Nature communications 11 (1) (2020)
Brooke Schuster, Michael Junkin, Sara Saheb Kashaf, Isabel Romero-Calvo, Kori Kirby, Jonathan Matthews, Christopher R Weber, Andrey Rzhetsky, Kevin P White, SavaÅŸ Tay
Automated microfluidic platform for dynamic and combinatorial drug screening of tumor organoids. Nature communications 11 (1) (2020)
Mustafa Fatih Abasiyanik, Blake Flood, Jing Lin, Sefika Ozcan, Sherin J Rouhani, Athalia Pyzer, Jonathan Trujillo, Chaojie Zhen, Ping Wu, Stephen Jumic, Andrew Wang, Thomas F Gajewski, Peng Wang, Madeline Hartley, Bekim Ameti, Rachael Niemiec, Marian Fernando, Bulent Aydogan, Cindy Bethel, Scott Matushek, Kathleen G Beavis, Nishant Agrawal, Jeremy Segal, SavaÅŸ Tay, Evgeny Izumchenko
Sensitive detection and quantification of SARS-CoV-2 in saliva. medRxiv : the preprint server for health sciences (2020)
William J Watterson, Melikhan Tanyeri, Andrea R Watson, Candace M Cham, Yue Shan, Eugene B Chang, A Murat Eren, SavaÅŸ Tay
Droplet-based high-throughput cultivation for accurate screening of antibiotic resistant gut microbes. eLife 9 (2020)
Ce Zhang, Hsiung-Lin Tu, Gengjie Jia, Tanzila Mukhtar, Verdon Taylor, Andrey Rzhetsky, SavaÅŸ Tay
Ultra-multiplexed analysis of single-cell dynamics reveals logic rules in differentiation. Science advances 5 (4) (2019)
Philip Dettinger, Tino Frank, Martin Etzrodt, Nouraiz Ahmed, Andreas Reimann, Christoph Trenzinger, Dirk Loeffler, Konstantinos D Kokkaliaris, Timm Schroeder, SavaÅŸ Tay
Automated Microfluidic System for Dynamic Stimulation and Tracking of Single Cells. Analytical chemistry 90 (18) (2018)