Ali Erturk (Ali Ertürk)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 25

Top Topics

Convolutional Neural Network

Machine Learning

Top Venues

bioRxiv : the preprint server for biology

The Journal of neuroscience : the official journal of the Society for Neuroscience

This page only lists publications with an associated author ORCID identifier.

Publications

Doris Kaltenecker, Rami Al-Maskari, Moritz Negwer, Luciano Hoeher, Florian Kofler, Shan Zhao, Mihail Todorov, Zhouyi Rong, Johannes Christian Paetzold, Benedikt Wiestler, Marie Piraud, Daniel Ruckert, Julia Geppert, Pauline Morigny, Maria Rohm, Bjoern H Menze, Stephan Herzig, Mauricio Berriel Diaz, Ali Erturk
Virtual reality-empowered deep-learning analysis of brain cells. Nature methods 21 (7) (2024)
Katalin Todorov-Völgyi, Judit González-Gallego, Stephan A Müller, Nathalie Beaufort, Rainer Malik, Martina Schifferer, Mihail Ivilinov Todorov, Dennis Crusius, Sophie Robinson, Andree Schmidt, Jakob Körbelin, Florence Bareyre, Ali Erturk, Christian Haass, Mikael Simons, Dominik Paquet, Stefan F Lichtenthaler, Martin Dichgans
Proteomics of mouse brain endothelium uncovers dysregulation of vesicular transport pathways during aging. Nature aging (2024)
Katalin Todorov-Völgyi, Judit González-Gallego, Stephan A Müller, Nathalie Beaufort, Rainer Malik, Martina Schifferer, Mihail Ivilinov Todorov, Dennis Crusius, Sophie Robinson, Andree Schmidt, Jakob Körbelin, Florence Bareyre, Ali Erturk, Christian Haass, Mikael Simons, Dominik Paquet, Stefan F Lichtenthaler, Martin Dichgans
Proteomics of mouse brain endothelium uncovers dysregulation of vesicular transport pathways during aging. Nature aging 4 (4) (2024)
Katalin Todorov-Völgyi, Judit González-Gallego, Stephan A Müller, Nathalie Beaufort, Rainer Malik, Martina Schifferer, Mihail Ivilinov Todorov, Dennis Crusius, Sophie Robinson, Andree Schmidt, Jakob Körbelin, Florence Bareyre, Ali Erturk, Christian Haass, Mikael Simons, Dominik Paquet, Stefan F Lichtenthaler, Martin Dichgans
Proteomics of mouse brain endothelium uncovers dysregulation of vesicular transport pathways during aging. Nature aging 4 (4) (2024)
Doris Kaltenecker, Rami Al-Maskari, Moritz Negwer, Luciano Hoeher, Florian Kofler, Shan Zhao, Mihail Todorov, Zhouyi Rong, Johannes Christian Paetzold, Benedikt Wiestler, Marie Piraud, Daniel Ruckert, Julia Geppert, Pauline Morigny, Maria Rohm, Bjoern H Menze, Stephan Herzig, Mauricio Berriel Diaz, Ali Erturk
Virtual reality-empowered deep-learning analysis of brain cells. Nature methods (2024)
Laura M Bartos, Stefanie Lietke, Valerio Zenatti, Sabrina V Kirchleitner, Jens Blobner, Karin Wind-Mark, Zeynep Ilgin Kolabas, Selin Ulukaya, Adrien Holzgreve, Viktoria C Ruf, Lea Helena Kunze, Sebastian T Kunte, Leonie Hoermann, Marlies Härtel, Ha Eun Park, Mattes Groß, Nicolai Franzmeier, Artem Zatcepin, Adrian Zounek, Lena Kaiser, Markus J Riemenschneider, Matthias Brendel, Boris-Stephan Rauchmann, Sophia Stoecklein, Sibylle Ziegler, Jochen Herms, Ali Erturk, Joerg-Christian Tonn, Niklas Thon, Louisa von Baumgarten, Matthias Prestel, Sabina Tahirovic, Nathalie L Albert, Matthias Brendel
Remote Neuroinflammation in Newly Diagnosed Glioblastoma Correlates with Unfavorable Clinical Outcome. Clinical cancer research : an official journal of the American Association for Cancer Research (2024)
Doris Kaltenecker, Rami Al-Maskari, Moritz Negwer, Luciano Hoeher, Florian Kofler, Shan Zhao, Mihail Todorov, Zhouyi Rong, Johannes Christian Paetzold, Benedikt Wiestler, Marie Piraud, Daniel Ruckert, Julia Geppert, Pauline Morigny, Maria Rohm, Bjoern H Menze, Stephan Herzig, Mauricio Berriel Diaz, Ali Erturk
Virtual reality-empowered deep-learning analysis of brain cells. Nature methods 21 (7) (2024)
Ali Erturk
Deep 3D histology powered by tissue clearing, omics and AI. Nature methods 21 (7) (2024)
Doris Kaltenecker, Rami Al-Maskari, Moritz Negwer, Luciano Hoeher, Florian Kofler, Shan Zhao, Mihail Todorov, Zhouyi Rong, Johannes Christian Paetzold, Benedikt Wiestler, Marie Piraud, Daniel Ruckert, Julia Geppert, Pauline Morigny, Maria Rohm, Bjoern H Menze, Stephan Herzig, Mauricio Berriel Diaz, Ali Erturk
Virtual reality-empowered deep-learning analysis of brain cells. Nature methods 21 (7) (2024)
Nikita Vladimirov, Fabian F Voigt, Thomas Naert, Gabriela R Araujo, Ruiyao Cai, Anna Maria Reuss, Shan Zhao, Patricia Schmid, Sven Hildebrand, Martina Schaettin, Dominik Groos, José María Mateos Melero, Philipp Bethge, Taiyo Yamamoto, Valentino Aerne, Alard Roebroeck, Ali Erturk, Adriano Aguzzi, Urs Ziegler, Esther T Stoeckli, Laura Baudis, Soeren Sten Lienkamp, Fritjof Helmchen
The Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for large cleared samples. bioRxiv : the preprint server for biology (2023)
Nikita Vladimirov, Fabian F Voigt, Thomas Naert, Gabriela R Araujo, Ruiyao Cai, Anna Maria Reuss, Shan Zhao, Patricia Schmid, Sven Hildebrand, Martina Schaettin, Dominik Groos, José María Mateos Melero, Philipp Bethge, Taiyo Yamamoto, Valentino Aerne, Alard Roebroeck, Ali Erturk, Adriano Aguzzi, Urs Ziegler, Esther T Stoeckli, Laura Baudis, Soeren Sten Lienkamp, Fritjof Helmchen
The Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for large cleared samples. bioRxiv : the preprint server for biology (2023)
Nikita Vladimirov, Fabian F Voigt, Thomas Naert, Gabriela R Araujo, Ruiyao Cai, Anna Maria Reuss, Shan Zhao, Patricia Schmid, Sven Hildebrand, Martina Schaettin, Dominik Groos, José María Mateos Melero, Philipp Bethge, Taiyo Yamamoto, Valentino Aerne, Alard Roebroeck, Ali Erturk, Adriano Aguzzi, Urs Ziegler, Esther T Stoeckli, Laura Baudis, Soeren Sten Lienkamp, Fritjof Helmchen
The Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for large cleared samples. bioRxiv : the preprint server for biology (2023)
Ruiyao Cai, Zeynep Ilgin Kolabas, Chenchen Pan, Hongcheng Mai, Shan Zhao, Doris Kaltenecker, Fabian F Voigt, Muge Molbay, Tzu-Lun Ohn, Cécile Vincke, Mihail I Todorov, Fritjof Helmchen, Jo A Van Ginderachter, Ali Erturk
Whole-mouse clearing and imaging at the cellular level with vDISCO. Nature protocols (2023)
Hongcheng Mai, Jie Luo, Luciano Hoeher, Rami Al-Maskari, Izabela Horvath, Ying Chen, Florian Kofler, Marie Piraud, Johannes C Paetzold, Jennifer Modamio, Mihail Todorov, Markus Elsner, Farida Hellal, Ali Erturk
Whole-body cellular mapping in mouse using standard IgG antibodies. Nature biotechnology (2023)
Nikita Vladimirov, Fabian F Voigt, Thomas Naert, Gabriela R Araujo, Ruiyao Cai, Anna Maria Reuss, Shan Zhao, Patricia Schmid, Sven Hildebrand, Martina Schaettin, Dominik Groos, José María Mateos Melero, Philipp Bethge, Taiyo Yamamoto, Valentino Aerne, Alard Roebroeck, Ali Erturk, Adriano Aguzzi, Urs Ziegler, Esther T Stoeckli, Laura Baudis, Soeren Sten Lienkamp, Fritjof Helmchen
The Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for large cleared samples. bioRxiv : the preprint server for biology (2023)
Hongcheng Mai, Zhouyi Rong, Shan Zhao, Ruiyao Cai, Hanno Steinke, Ingo Bechmann, Ali Erturk
Scalable tissue labeling and clearing of intact human organs. Nature protocols 17 (10) (2022)
Sarajo K Mohanta, Li Peng, Yuanfang Li, Shu Lu, Ting Sun, Lorenzo Carnevale, Marialuisa Perrotta, Zhe Ma, Benjamin Förstera, Karen Stanic, Chuankai Zhang, Xi Zhang, Piotr Szczepaniak, Mariaelvy Bianchini, Borhan R Saeed, Raimondo Carnevale, Desheng Hu, Ryszard Nosalski, Fabio Pallante, Michael Beer, Donato Santovito, Ali Erturk, Thomas C Mettenleiter, Barbara G Klupp, Remco T A Megens, Sabine Steffens, Jaroslav Pelisek, Hans-Henning Eckstein, Robert Kleemann, Livia Habenicht, Ziad Mallat, Jean-Baptiste Michel, Juergen Bernhagen, Martin Dichgans, Giuseppe D'Agostino, Tomasz J Guzik, Peder S Olofsson, Changjun Yin, Christian Weber, Giuseppe Lembo, Daniela Carnevale, Andreas J R Habenicht
Neuroimmune cardiovascular interfaces control atherosclerosis. Nature 605 (7908) (2022)
Muge Molbay, Zeynep Ilgin Kolabas, Mihail Ivilinov Todorov, Tzu-Lun Ohn, Ali Erturk
A guidebook for DISCO tissue clearing. Molecular systems biology 17 (3) (2021)
Oliver Schoppe, Chenchen Pan, Javier Coronel, Hongcheng Mai, Zhouyi Rong, Mihail Ivilinov Todorov, Annemarie Müskes, Fernando Navarro, Hongwei Li, Ali Erturk, Bjoern H Menze
Deep learning-enabled multi-organ segmentation in whole-body mouse scans. Nature communications 11 (1) (2020)
Mihail Ivilinov Todorov, Johannes Christian Paetzold, Oliver Schoppe, Giles Tetteh, Suprosanna Shit, Velizar Efremov, Katalin Todorov-Völgyi, Marco Düring, Martin Dichgans, Marie Piraud, Bjoern H Menze, Ali Erturk
Machine learning analysis of whole mouse brain vasculature. Nature methods 17 (4) (2020)
Hiroki R Ueda, Ali Erturk, Kwanghun Chung, Viviana Gradinaru, Alain Chédotal, Pavel Tomancak, Philipp J Keller
Tissue clearing and its applications in neuroscience. Nature reviews. Neuroscience 21 (2) (2020)
Tomoyuki Mano, Alexandre Albanese, Hans-Ulrich Dodt, Ali Erturk, Viviana Gradinaru, Jennifer B Treweek, Atsushi Miyawaki, Kwanghun Chung, Hiroki R Ueda
Whole-Brain Analysis of Cells and Circuits by Tissue Clearing and Light-Sheet Microscopy. The Journal of neuroscience : the official journal of the Society for Neuroscience 38 (44) (2019)
Samira Parhizkar, Thomas Arzberger, Matthias Brendel, Gernot Kleinberger, Maximilian Deussing, Carola Focke, Brigitte Nuscher, Monica Xiong, Alireza Ghasemigharagoz, Natalie Katzmarski, Susanne Krasemann, Stefan F Lichtenthaler, Stephan A Müller, Alessio Colombo, Laura Sebastian Monasor, Sabina Tahirovic, Jochen Herms, Michael Willem, Nadine Pettkus, Oleg Butovsky, Peter Bartenstein, Dieter Edbauer, Axel Rominger, Ali Erturk, Stefan A Grathwohl, Jonas J Neher, David M Holtzman, Melanie Meyer-Luehmann, Christian Haass
Loss of TREM2 function increases amyloid seeding but reduces plaque-associated ApoE. Nature neuroscience 22 (2) (2019)
Ruiyao Cai, Chenchen Pan, Alireza Ghasemigharagoz, Mihail Ivilinov Todorov, Benjamin Förstera, Shan Zhao, Harsharan S Bhatia, Arnaldo Parra-Damas, Leander Mrowka, Delphine Theodorou, Markus Rempfler, Anna Lenice Ribeiro Xavier, Benjamin T Kress, Corinne Benakis, Hanno Steinke, Sabine Liebscher, Ingo Bechmann, Arthur Liesz, Bjoern Menze, Martin Kerschensteiner, Maiken Nedergaard, Ali Erturk
Panoptic imaging of transparent mice reveals whole-body neuronal projections and skull-meninges connections. Nature neuroscience 22 (2) (2018)
Ali Erturk, Susanne Mentz, Erik E Stout, Maj Hedehus, Sara L Dominguez, Lisa Neumaier, Franziska Krammer, Gemma Llovera, Karpagam Srinivasan, David V Hansen, Arthur Liesz, Kimberly A Scearce-Levie, Morgan Sheng
Interfering with the Chronic Immune Response Rescues Chronic Degeneration After Traumatic Brain Injury. The Journal of neuroscience : the official journal of the Society for Neuroscience 36 (38) (2017)