Amr M Alexandari

Publication Activity (10 Years)

Years Active: 2019-2023
Publications (10 Years): 3

Top Topics

Convolutional Neural Network

Top Venues

Science (New York, N.Y.)

Journal of the Royal Society, Interface

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Amr M Alexandari, Connor A Horton, Avanti Shrikumar, Nilay Shah, Eileen Li, Melanie Weilert, Miles A Pufall, Julia Zeitlinger, Polly Morrell Fordyce, Anshul Kundaje
De novo distillation of thermodynamic affinity from deep learning regulatory sequence models of in vivo protein-DNA binding. bioRxiv : the preprint server for biology (2023)
Connor A Horton, Amr M Alexandari, Michael G B Hayes, Emil Marklund, Julia M Schaepe, Arjun K Aditham, Nilay Shah, Peter H Suzuki, Avanti Shrikumar, Ariel Afek, William J Greenleaf, Raluca Gordân, Julia Zeitlinger, Anshul Kundaje, Polly Morrell Fordyce
Short tandem repeats bind transcription factors to tune eukaryotic gene expression. Science (New York, N.Y.) 381 (6664) (2023)
Travers Ching, Daniel Scott Himmelstein, Brett K Beaulieu-Jones, Alexandr A Kalinin, Brian T Do, Gregory P Way, Enrico Ferrero, Paul-Michael Agapow, Michael Zietz, Michael M Hoffman, Wei Xie, Gail L Rosen, Benjamin J Lengerich, Johnny Israeli, Jack Lanchantin, Stephen Woloszynek, Anne E Carpenter, Avanti Shrikumar, Jinbo Xu, Evan M Cofer, Christopher A Lavender, Srinivas C Turaga, Amr M Alexandari, Zhiyong Lu, David J Harris, Dave DeCaprio, Yanjun Qi, Anshul Kundaje, Yifan Peng, Laura K Wiley, Marwin H S Segler, Simina M Boca, S Joshua Swamidass, Austin Huang, Anthony Gitter, Casey S Greene
Opportunities and obstacles for deep learning in biology and medicine. Journal of the Royal Society, Interface 15 (141) (2019)