William J Greenleaf (William Greenleaf)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 119

Top Venues

Nature methods

Nature immunology

Proceedings of the National Academy of Sciences of the United States of America

Nature communications

Stanford University

Stanford University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Stanford University

United States

Assistant Professor :: Genetics Department

Education History

Stanford University

United States

PHD :: Applied Physics

Publications

Benjamin R Doughty, Michaela M Hinks, Julia M Schaepe, Georgi K Marinov, Abby R Thurm, Carolina Rios-Martinez, Benjamin E Parks, Yingxuan Tan, Emil Marklund, Danilo Dubocanin, Lacramioara Bintu, William J Greenleaf
Single-molecule chromatin configurations link transcription factor binding to expression in human cells. bioRxiv : the preprint server for biology (2024)
Christian A Choe, Johan O L Andreasson, Feriel Melaine, Wipapat Kladwang, Michelle J Wu, Fernando Portela, Roger Wellington-Oguri, John J Nicol, Hannah K Wayment-Steele, Michael Gotrik, Eterna Participants, Purvesh Khatri, William J Greenleaf, Rachel J Hagey
Compact RNA sensors for increasingly complex functions of multiple inputs. bioRxiv : the preprint server for biology (2024)
David Yao, Josh Tycko, Jin Woo Oh, Lexi R Bounds, Sager J Gosai, Lazaros Lataniotis, Ava Mackay Smith, Benjamin R Doughty, Aditi K Narayanan, Henri Schmidt, Tania Guerrero-Altamirano, Keith Siklenka, Katherine Guo, Alexander D White, Ingrid Youngworth, Kalina Andreeva, Xingjie Ren, Alejandro Barrera, Yunhai Luo, Galip Gürkan Yardımcı, Ryan Tewhey, Anshul Kundaje, William J Greenleaf, Pardis C Sabeti, Christina S Leslie, Yuri Pritykin, Jill E Moore, Michael A Beer, Charles A Gersbach, Timothy E Reddy, Yin Shen, Jesse M Engreitz, Michael C Bassik, Steven K Reilly
Multicenter integrated analysis of noncoding CRISPRi screens. Nature methods 21 (4) (2024)
David Yao, Josh Tycko, Jin Woo Oh, Lexi R Bounds, Sager J Gosai, Lazaros Lataniotis, Ava Mackay Smith, Benjamin R Doughty, Aditi K Narayanan, Henri Schmidt, Tania Guerrero-Altamirano, Keith Siklenka, Katherine Guo, Alexander D White, Ingrid Youngworth, Kalina Andreeva, Xingjie Ren, Alejandro Barrera, Yunhai Luo, Galip Gürkan Yardımcı, Ryan Tewhey, Anshul Kundaje, William J Greenleaf, Pardis C Sabeti, Christina S Leslie, Yuri Pritykin, Jill E Moore, Michael A Beer, Charles A Gersbach, Timothy E Reddy, Yin Shen, Jesse M Engreitz, Michael C Bassik, Steven K Reilly
Multicenter integrated analysis of noncoding CRISPRi screens. Nature methods 21 (4) (2024)
Noah Gamble, Alexandra Bradu, Jason A Caldwell, Joshua A McKeever, Olubusayo Bolonduro, Ebru Ermis, Caroline Kaiser, YeEun Kim, Benjamin E Parks, Sandy Klemm, William J Greenleaf, Gerald R Crabtree, Andrew S Koh
PU.1 and BCL11B sequentially cooperate with RUNX1 to anchor mSWI/SNF to poise the T cell effector landscape. Nature immunology 25 (5) (2024)
Eitan Moses, Tehila Atlan, Xue Sun, Roman Franek, Atif Siddiqui, Georgi K Marinov, Sagiv Shifman, David M Zucker, Adi Oron-Gottesman, William J Greenleaf, Ehud Cohen, Oren Ram, Itamar Harel
The killifish germline regulates longevity and somatic repair in a sex-specific manner. bioRxiv : the preprint server for biology (2024)
David Yao, Josh Tycko, Jin Woo Oh, Lexi R Bounds, Sager J Gosai, Lazaros Lataniotis, Ava Mackay Smith, Benjamin R Doughty, Aditi K Narayanan, Henri Schmidt, Tania Guerrero-Altamirano, Keith Siklenka, Katherine Guo, Alexander D White, Ingrid Youngworth, Kalina Andreeva, Xingjie Ren, Alejandro Barrera, Yunhai Luo, Galip Gürkan Yardımcı, Ryan Tewhey, Anshul Kundaje, William J Greenleaf, Pardis C Sabeti, Christina S Leslie, Yuri Pritykin, Jill E Moore, Michael A Beer, Charles A Gersbach, Timothy E Reddy, Yin Shen, Jesse M Engreitz, Michael C Bassik, Steven K Reilly
Multicenter integrated analysis of noncoding CRISPRi screens. Nature methods (2024)
David Yao, Josh Tycko, Jin Woo Oh, Lexi R Bounds, Sager J Gosai, Lazaros Lataniotis, Ava Mackay Smith, Benjamin R Doughty, Aditi K Narayanan, Henri Schmidt, Tania Guerrero-Altamirano, Keith Siklenka, Katherine Guo, Alexander D White, Ingrid Youngworth, Kalina Andreeva, Xingjie Ren, Alejandro Barrera, Yunhai Luo, Galip Gürkan Yardımcı, Ryan Tewhey, Anshul Kundaje, William J Greenleaf, Pardis C Sabeti, Christina S Leslie, Yuri Pritykin, Jill E Moore, Michael A Beer, Charles A Gersbach, Timothy E Reddy, Yin Shen, Jesse M Engreitz, Michael C Bassik, Steven K Reilly
Multicenter integrated analysis of noncoding CRISPRi screens. Nature methods 21 (4) (2024)
Noah Gamble, Alexandra Bradu, Jason A Caldwell, Joshua A McKeever, Olubusayo Bolonduro, Ebru Ermis, Caroline Kaiser, YeEun Kim, Benjamin E Parks, Sandy Klemm, William J Greenleaf, Gerald R Crabtree, Andrew S Koh
Publisher Correction: PU.1 and BCL11B sequentially cooperate with RUNX1 to anchor mSWI/SNF to poise the T cell effector landscape. Nature immunology (2024)
David Yao, Josh Tycko, Jin Woo Oh, Lexi R Bounds, Sager J Gosai, Lazaros Lataniotis, Ava Mackay Smith, Benjamin R Doughty, Aditi K Narayanan, Henri Schmidt, Tania Guerrero-Altamirano, Keith Siklenka, Katherine Guo, Alexander D White, Ingrid Youngworth, Kalina Andreeva, Xingjie Ren, Alejandro Barrera, Yunhai Luo, Galip Gürkan Yardımcı, Ryan Tewhey, Anshul Kundaje, William J Greenleaf, Pardis C Sabeti, Christina S Leslie, Yuri Pritykin, Jill E Moore, Michael A Beer, Charles A Gersbach, Timothy E Reddy, Yin Shen, Jesse M Engreitz, Michael C Bassik, Steven K Reilly
Multicenter integrated analysis of noncoding CRISPRi screens. Nature methods (2024)
David Yao, Josh Tycko, Jin Woo Oh, Lexi R Bounds, Sager J Gosai, Lazaros Lataniotis, Ava Mackay Smith, Benjamin R Doughty, Aditi K Narayanan, Henri Schmidt, Tania Guerrero-Altamirano, Keith Siklenka, Katherine Guo, Alexander D White, Ingrid Youngworth, Kalina Andreeva, Xingjie Ren, Alejandro Barrera, Yunhai Luo, Galip Gürkan Yardımcı, Ryan Tewhey, Anshul Kundaje, William J Greenleaf, Pardis C Sabeti, Christina S Leslie, Yuri Pritykin, Jill E Moore, Michael A Beer, Charles A Gersbach, Timothy E Reddy, Yin Shen, Jesse M Engreitz, Michael C Bassik, Steven K Reilly
Multicenter integrated analysis of noncoding CRISPRi screens. Nature methods 21 (4) (2024)
David Yao, Josh Tycko, Jin Woo Oh, Lexi R Bounds, Sager J Gosai, Lazaros Lataniotis, Ava Mackay Smith, Benjamin R Doughty, Aditi K Narayanan, Henri Schmidt, Tania Guerrero-Altamirano, Keith Siklenka, Katherine Guo, Alexander D White, Ingrid Youngworth, Kalina Andreeva, Xingjie Ren, Alejandro Barrera, Yunhai Luo, Galip Gürkan Yardımcı, Ryan Tewhey, Anshul Kundaje, William J Greenleaf, Pardis C Sabeti, Christina S Leslie, Yuri Pritykin, Jill E Moore, Michael A Beer, Charles A Gersbach, Timothy E Reddy, Yin Shen, Jesse M Engreitz, Michael C Bassik, Steven K Reilly
Multicenter integrated analysis of noncoding CRISPRi screens. Nature methods (2024)
Eitan Moses, Tehila Atlan, Xue Sun, Roman Franek, Atif Siddiqui, Georgi K Marinov, Sagiv Shifman, David M Zucker, Adi Oron-Gottesman, William J Greenleaf, Ehud Cohen, Oren Ram, Itamar Harel
The killifish germline regulates longevity and somatic repair in a sex-specific manner. bioRxiv : the preprint server for biology (2024)
YeEun Kim, Ariel A Calderon, Patricia Favaro, David R Glass, Albert G Tsai, Daniel Ho, Luciene Borges, William J Greenleaf, Sean C Bendall
Terminal deoxynucleotidyl transferase and CD84 identify human multi-potent lymphoid progenitors. Nature communications 15 (1) (2024)
Noah Gamble, Alexandra Bradu, Jason A Caldwell, Joshua A McKeever, Olubusayo Bolonduro, Ebru Ermis, Caroline Kaiser, YeEun Kim, Benjamin E Parks, Sandy Klemm, William J Greenleaf, Gerald R Crabtree, Andrew S Koh
PU.1 and BCL11B sequentially cooperate with RUNX1 to anchor mSWI/SNF to poise the T cell effector landscape. Nature immunology 25 (5) (2024)
David Yao, Josh Tycko, Jin Woo Oh, Lexi R Bounds, Sager J Gosai, Lazaros Lataniotis, Ava Mackay Smith, Benjamin R Doughty, Aditi K Narayanan, Henri Schmidt, Tania Guerrero-Altamirano, Keith Siklenka, Katherine Guo, Alexander D White, Ingrid Youngworth, Kalina Andreeva, Xingjie Ren, Alejandro Barrera, Yunhai Luo, Galip Gürkan Yardımcı, Ryan Tewhey, Anshul Kundaje, William J Greenleaf, Pardis C Sabeti, Christina S Leslie, Yuri Pritykin, Jill E Moore, Michael A Beer, Charles A Gersbach, Timothy E Reddy, Yin Shen, Jesse M Engreitz, Michael C Bassik, Steven K Reilly
Multicenter integrated analysis of noncoding CRISPRi screens. Nature methods 21 (4) (2024)
David Yao, Josh Tycko, Jin Woo Oh, Lexi R Bounds, Sager J Gosai, Lazaros Lataniotis, Ava Mackay Smith, Benjamin R Doughty, Aditi K Narayanan, Henri Schmidt, Tania Guerrero-Altamirano, Keith Siklenka, Katherine Guo, Alexander D White, Ingrid Youngworth, Kalina Andreeva, Xingjie Ren, Alejandro Barrera, Yunhai Luo, Galip Gürkan Yardımcı, Ryan Tewhey, Anshul Kundaje, William J Greenleaf, Pardis C Sabeti, Christina S Leslie, Yuri Pritykin, Jill E Moore, Michael A Beer, Charles A Gersbach, Timothy E Reddy, Yin Shen, Jesse M Engreitz, Michael C Bassik, Steven K Reilly
Multicenter integrated analysis of noncoding CRISPRi screens. Nature methods (2024)
David Yao, Josh Tycko, Jin Woo Oh, Lexi R Bounds, Sager J Gosai, Lazaros Lataniotis, Ava Mackay Smith, Benjamin R Doughty, Aditi K Narayanan, Henri Schmidt, Tania Guerrero-Altamirano, Keith Siklenka, Katherine Guo, Alexander D White, Ingrid Youngworth, Kalina Andreeva, Xingjie Ren, Alejandro Barrera, Yunhai Luo, Galip Gürkan Yardımcı, Ryan Tewhey, Anshul Kundaje, William J Greenleaf, Pardis C Sabeti, Christina S Leslie, Yuri Pritykin, Jill E Moore, Michael A Beer, Charles A Gersbach, Timothy E Reddy, Yin Shen, Jesse M Engreitz, Michael C Bassik, Steven K Reilly
Multicenter integrated analysis of noncoding CRISPRi screens. Nature methods 21 (4) (2024)
YeEun Kim, Ariel A Calderon, Patricia Favaro, David R Glass, Albert G Tsai, Daniel Ho, Luciene Borges, William J Greenleaf, Sean C Bendall
Terminal deoxynucleotidyl transferase and CD84 identify human multi-potent lymphoid progenitors. Nature communications 15 (1) (2024)
David Yao, Josh Tycko, Jin Woo Oh, Lexi R Bounds, Sager J Gosai, Lazaros Lataniotis, Ava Mackay Smith, Benjamin R Doughty, Aditi K Narayanan, Henri Schmidt, Tania Guerrero-Altamirano, Keith Siklenka, Katherine Guo, Alexander D White, Ingrid Youngworth, Kalina Andreeva, Xingjie Ren, Alejandro Barrera, Yunhai Luo, Galip Gürkan Yardımcı, Ryan Tewhey, Anshul Kundaje, William J Greenleaf, Pardis C Sabeti, Christina S Leslie, Yuri Pritykin, Jill E Moore, Michael A Beer, Charles A Gersbach, Timothy E Reddy, Yin Shen, Jesse M Engreitz, Michael C Bassik, Steven K Reilly
Multicenter integrated analysis of noncoding CRISPRi screens. Nature methods 21 (4) (2024)
Christian A Choe, Johan O L Andreasson, Feriel Melaine, Wipapat Kladwang, Michelle J Wu, Fernando Portela, Roger Wellington-Oguri, John J Nicol, Hannah K Wayment-Steele, Michael Gotrik, Eterna Participants, Purvesh Khatri, William J Greenleaf, Rachel J Hagey
Compact RNA sensors for increasingly complex functions of multiple inputs. bioRxiv : the preprint server for biology (2024)
Noah Gamble, Alexandra Bradu, Jason A Caldwell, Joshua A McKeever, Olubusayo Bolonduro, Ebru Ermis, Caroline Kaiser, YeEun Kim, Benjamin E Parks, Sandy Klemm, William J Greenleaf, Gerald R Crabtree, Andrew S Koh
PU.1 and BCL11B sequentially cooperate with RUNX1 to anchor mSWI/SNF to poise the T cell effector landscape. Nature immunology 25 (5) (2024)
David Yao, Josh Tycko, Jin Woo Oh, Lexi R Bounds, Sager J Gosai, Lazaros Lataniotis, Ava Mackay Smith, Benjamin R Doughty, Aditi K Narayanan, Henri Schmidt, Tania Guerrero-Altamirano, Keith Siklenka, Katherine Guo, Alexander D White, Ingrid Youngworth, Kalina Andreeva, Xingjie Ren, Alejandro Barrera, Yunhai Luo, Galip Gürkan Yardımcı, Ryan Tewhey, Anshul Kundaje, William J Greenleaf, Pardis C Sabeti, Christina S Leslie, Yuri Pritykin, Jill E Moore, Michael A Beer, Charles A Gersbach, Timothy E Reddy, Yin Shen, Jesse M Engreitz, Michael C Bassik, Steven K Reilly
Multicenter integrated analysis of noncoding CRISPRi screens. Nature methods 21 (4) (2024)
David Yao, Josh Tycko, Jin Woo Oh, Lexi R Bounds, Sager J Gosai, Lazaros Lataniotis, Ava Mackay Smith, Benjamin R Doughty, Aditi K Narayanan, Henri Schmidt, Tania Guerrero-Altamirano, Keith Siklenka, Katherine Guo, Alexander D White, Ingrid Youngworth, Kalina Andreeva, Xingjie Ren, Alejandro Barrera, Yunhai Luo, Galip Gürkan Yardımcı, Ryan Tewhey, Anshul Kundaje, William J Greenleaf, Pardis C Sabeti, Christina S Leslie, Yuri Pritykin, Jill E Moore, Michael A Beer, Charles A Gersbach, Timothy E Reddy, Yin Shen, Jesse M Engreitz, Michael C Bassik, Steven K Reilly
Multicenter integrated analysis of noncoding CRISPRi screens. Nature methods (2024)
YeEun Kim, Ariel A Calderon, Patricia Favaro, David R Glass, Albert G Tsai, Daniel Ho, Luciene Borges, William J Greenleaf, Sean C Bendall
Terminal deoxynucleotidyl transferase and CD84 identify human multi-potent lymphoid progenitors. Nature communications 15 (1) (2024)
Benjamin R Doughty, Michaela M Hinks, Julia M Schaepe, Georgi K Marinov, Abby R Thurm, Carolina Rios-Martinez, Benjamin E Parks, Yingxuan Tan, Emil Marklund, Danilo Dubocanin, Lacramioara Bintu, William J Greenleaf
Single-molecule chromatin configurations link transcription factor binding to expression in human cells. bioRxiv : the preprint server for biology (2024)
David Yao, Josh Tycko, Jin Woo Oh, Lexi R Bounds, Sager J Gosai, Lazaros Lataniotis, Ava Mackay Smith, Benjamin R Doughty, Aditi K Narayanan, Henri Schmidt, Tania Guerrero-Altamirano, Keith Siklenka, Katherine Guo, Alexander D White, Ingrid Youngworth, Kalina Andreeva, Xingjie Ren, Alejandro Barrera, Yunhai Luo, Galip Gürkan Yardımcı, Ryan Tewhey, Anshul Kundaje, William J Greenleaf, Pardis C Sabeti, Christina S Leslie, Yuri Pritykin, Jill E Moore, Michael A Beer, Charles A Gersbach, Timothy E Reddy, Yin Shen, Jesse M Engreitz, Michael C Bassik, Steven K Reilly
Multicenter integrated analysis of noncoding CRISPRi screens. Nature methods 21 (4) (2024)
David Yao, Josh Tycko, Jin Woo Oh, Lexi R Bounds, Sager J Gosai, Lazaros Lataniotis, Ava Mackay Smith, Benjamin R Doughty, Aditi K Narayanan, Henri Schmidt, Tania Guerrero-Altamirano, Keith Siklenka, Katherine Guo, Alexander D White, Ingrid Youngworth, Kalina Andreeva, Xingjie Ren, Alejandro Barrera, Yunhai Luo, Galip Gürkan Yardımcı, Ryan Tewhey, Anshul Kundaje, William J Greenleaf, Pardis C Sabeti, Christina S Leslie, Yuri Pritykin, Jill E Moore, Michael A Beer, Charles A Gersbach, Timothy E Reddy, Yin Shen, Jesse M Engreitz, Michael C Bassik, Steven K Reilly
Multicenter integrated analysis of noncoding CRISPRi screens. Nature methods 21 (4) (2024)
David Yao, Josh Tycko, Jin Woo Oh, Lexi R Bounds, Sager J Gosai, Lazaros Lataniotis, Ava Mackay Smith, Benjamin R Doughty, Aditi K Narayanan, Henri Schmidt, Tania Guerrero-Altamirano, Keith Siklenka, Katherine Guo, Alexander D White, Ingrid Youngworth, Kalina Andreeva, Xingjie Ren, Alejandro Barrera, Yunhai Luo, Galip Gürkan Yardımcı, Ryan Tewhey, Anshul Kundaje, William J Greenleaf, Pardis C Sabeti, Christina S Leslie, Yuri Pritykin, Jill E Moore, Michael A Beer, Charles A Gersbach, Timothy E Reddy, Yin Shen, Jesse M Engreitz, Michael C Bassik, Steven K Reilly
Multicenter integrated analysis of noncoding CRISPRi screens. Nature methods 21 (4) (2024)
Noah Gamble, Alexandra Bradu, Jason A Caldwell, Joshua A McKeever, Olubusayo Bolonduro, Ebru Ermis, Caroline Kaiser, YeEun Kim, Benjamin E Parks, Sandy Klemm, William J Greenleaf, Gerald R Crabtree, Andrew S Koh
PU.1 and BCL11B sequentially cooperate with RUNX1 to anchor mSWI/SNF to poise the T cell effector landscape. Nature immunology (2024)
Laksshman Sundaram, Arvind Kumar, Matthew Zatzman, Adriana Salcedo, Neal G Ravindra, Shadi Shams, Brian H Louie, S Tansu Bagdatli, Matthew A Myers, Shahab Sarmashghi, Hyo Young Choi, Won-Young Choi, Kathryn E Yost, Yanding Zhao, Jeffrey M Granja, Toshinori Hinoue, David Neil Hayes, Andrew D Cherniak, Ina Felau, Hani Choudhry, Jean Claude Zenklusen, Kyle Kai-How Farh, Andrew W McPherson, Christina Curtis, Peter W Laird, null null, M Ryan Corces, Howard Y Chang, William J Greenleaf, John A Demchok, Liming Yang, Roy Tarnuzzer, Samantha J Caesar-Johnson, Zhining Wang, Ashley S Doane, Ekta Khurana, Mauro A A Castro, Alexander J Lazar, Bradley M Broom, John N Weinstein, Rehan Akbani, Shwetha V Kumar, Benjamin J Raphael, Christopher K Wong, Joshua M Stuart, Rojin Safavi, Christopher C Benz, Benjamin K Johnson, Cindy Kyi, Hui Shen
Single-cell chromatin accessibility reveals malignant regulatory programs in primary human cancers. Science (New York, N.Y.) 385 (6713) (2024)
Christian A Choe, Johan O L Andreasson, Feriel Melaine, Wipapat Kladwang, Michelle J Wu, Fernando Portela, Roger Wellington-Oguri, John J Nicol, Hannah K Wayment-Steele, Michael Gotrik, Eterna Participants, Purvesh Khatri, William J Greenleaf, Rachel J Hagey
Compact RNA sensors for increasingly complex functions of multiple inputs. bioRxiv : the preprint server for biology (2024)
Noah Gamble, Alexandra Bradu, Jason A Caldwell, Joshua A McKeever, Olubusayo Bolonduro, Ebru Ermis, Caroline Kaiser, YeEun Kim, Benjamin E Parks, Sandy Klemm, William J Greenleaf, Gerald R Crabtree, Andrew S Koh
PU.1 and BCL11B sequentially cooperate with RUNX1 to anchor mSWI/SNF to poise the T cell effector landscape. Nature immunology 25 (5) (2024)
YeEun Kim, Ariel A Calderon, Patricia Favaro, David R Glass, Albert G Tsai, Daniel Ho, Luciene Borges, William J Greenleaf, Sean C Bendall
Terminal deoxynucleotidyl transferase and CD84 identify human multi-potent lymphoid progenitors. Nature communications 15 (1) (2024)
Noah Gamble, Alexandra Bradu, Jason A Caldwell, Joshua A McKeever, Olubusayo Bolonduro, Ebru Ermis, Caroline Kaiser, YeEun Kim, Benjamin E Parks, Sandy Klemm, William J Greenleaf, Gerald R Crabtree, Andrew S Koh
PU.1 and BCL11B sequentially cooperate with RUNX1 to anchor mSWI/SNF to poise the T cell effector landscape. Nature immunology 25 (5) (2024)
Noah Gamble, Alexandra Bradu, Jason A Caldwell, Joshua A McKeever, Olubusayo Bolonduro, Ebru Ermis, Caroline Kaiser, YeEun Kim, Benjamin E Parks, Sandy Klemm, William J Greenleaf, Gerald R Crabtree, Andrew S Koh
PU.1 and BCL11B sequentially cooperate with RUNX1 to anchor mSWI/SNF to poise the T cell effector landscape. Nature immunology (2024)
Stephano S Mello, Brittany M Flowers, Pawel K Mazur, James J Lee, Fabian Müller, Sarah K Denny, Sofia Ferreira, Kathryn J Hanson, Seung K Kim, William J Greenleaf, Laura D Wood, Laura D Attardi
Multifaceted role for p53 in pancreatic cancer suppression. Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Andreas R Gschwind, Kristy S Mualim, Alireza Karbalayghareh, Maya U Sheth, Kushal K Dey, Evelyn Jagoda, Ramil N Nurtdinov, Wang Xi, Anthony S Tan, Hank Jones, X Rosa Ma, David Yao, Joseph Nasser, Žiga Avsec, Benjamin T James, Muhammad Saad Shamim, Neva C Durand, Suhas S P Rao, Ragini Mahajan, Benjamin R Doughty, Kalina Andreeva, Jacob C Ulirsch, Kaili Fan, Elizabeth M Perez, Tri C Nguyen, David R Kelley, Hilary K Finucane, Jill E Moore, Nishigandha Phalke, Manolis Kellis, Michael C Bassik, Alkes L Price, Michael A Beer, Roderic Guigo, John A Stamatoyannopoulos, Erez Lieberman Aiden, William J Greenleaf, Christina S Leslie, Lars M Steinmetz, Anshul Kundaje, Jesse M Engreitz
An encyclopedia of enhancer-gene regulatory interactions in the human genome. bioRxiv : the preprint server for biology (2023)
John H Shin, Steve L Bonilla, Sarah K Denny, William J Greenleaf, Daniel Herschlag
Dissecting the energetic architecture within an RNA tertiary structural motif via high-throughput thermodynamic measurements. Proceedings of the National Academy of Sciences of the United States of America 120 (11) (2023)
Maureen Ty, Shenghuan Sun, Perri C Callaway, John Rek, Kathleen Dantzler Press, Kattria van der Ploeg, Jason Nideffer, Zicheng Hu, Sandy Klemm, William J Greenleaf, Michele Donato, Stephen Tukwasibwe, Emmanuel Arinaitwe, Felistas Nankya, Kenneth Musinguzi, Dean Andrew, Lauren de la Parte, Diego Martinez Mori, Savannah Nicole Lewis, Saki Takahashi, Isabel Rodriguez-Barraquer, Bryan Greenhouse, Catherine A Blish, Paul J Utz, Purvesh Khatri, Grant Dorsey, Moses Kamya, Michelle J Boyle, Margaret E Feeney, Isaac Ssewanyana, Prasanna Jagannathan
Malaria-driven expansion of adaptive-like functional CD56-negative NK cells correlates with clinical immunity to malaria. Science translational medicine 15 (680) (2023)
Stephano S Mello, Brittany M Flowers, Pawel K Mazur, James J Lee, Fabian Müller, Sarah K Denny, Sofia Ferreira, Kathryn J Hanson, Seung K Kim, William J Greenleaf, Laura D Wood, Laura D Attardi
Multifaceted role for p53 in pancreatic cancer suppression. Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Jimena Andersen, Nicholas Thom, Jennifer L Shadrach, Xiaoyu Chen, Massimo Mario Onesto, Neal D Amin, Se-Jin Yoon, Li Li, William J Greenleaf, Fabian Müller, Anca M Pașca, Julia A Kaltschmidt, Sergiu P Pașca
Single-cell transcriptomic landscape of the developing human spinal cord. Nature neuroscience 26 (5) (2023)
Jimena Andersen, Nicholas Thom, Jennifer L Shadrach, Xiaoyu Chen, Massimo Mario Onesto, Neal D Amin, Se-Jin Yoon, Li Li, William J Greenleaf, Fabian Müller, Anca M Pașca, Julia A Kaltschmidt, Sergiu P Pașca
Single-cell transcriptomic landscape of the developing human spinal cord. Nature neuroscience (2023)
John H Shin, Steve L Bonilla, Sarah K Denny, William J Greenleaf, Daniel Herschlag
Dissecting the energetic architecture within an RNA tertiary structural motif via high-throughput thermodynamic measurements. Proceedings of the National Academy of Sciences of the United States of America 120 (11) (2023)
John H Shin, Steve L Bonilla, Sarah K Denny, William J Greenleaf, Daniel Herschlag
Dissecting the energetic architecture within an RNA tertiary structural motif via high-throughput thermodynamic measurements. Proceedings of the National Academy of Sciences of the United States of America 120 (11) (2023)
Maureen Ty, Shenghuan Sun, Perri C Callaway, John Rek, Kathleen Dantzler Press, Kattria van der Ploeg, Jason Nideffer, Zicheng Hu, Sandy Klemm, William J Greenleaf, Michele Donato, Stephen Tukwasibwe, Emmanuel Arinaitwe, Felistas Nankya, Kenneth Musinguzi, Dean Andrew, Lauren de la Parte, Diego Martinez Mori, Savannah Nicole Lewis, Saki Takahashi, Isabel Rodriguez-Barraquer, Bryan Greenhouse, Catherine A Blish, Paul J Utz, Purvesh Khatri, Grant Dorsey, Moses Kamya, Michelle J Boyle, Margaret E Feeney, Isaac Ssewanyana, Prasanna Jagannathan
Malaria-driven expansion of adaptive-like functional CD56-negative NK cells correlates with clinical immunity to malaria. Science translational medicine 15 (680) (2023)
Shuxiao Chen, Bokai Zhu, Sijia Huang, John W Hickey, Kevin Z Lin, Michael Paul Snyder, William J Greenleaf, Garry P Nolan, Nancy R Zhang, Zongming Ma
Integration of spatial and single-cell data across modalities with weakly linked features. Nature biotechnology (2023)
Maureen Ty, Shenghuan Sun, Perri C Callaway, John Rek, Kathleen Dantzler Press, Kattria van der Ploeg, Jason Nideffer, Zicheng Hu, Sandy Klemm, William J Greenleaf, Michele Donato, Stephen Tukwasibwe, Emmanuel Arinaitwe, Felistas Nankya, Kenneth Musinguzi, Dean Andrew, Lauren de la Parte, Diego Martinez Mori, Savannah Nicole Lewis, Saki Takahashi, Isabel Rodriguez-Barraquer, Bryan Greenhouse, Catherine A Blish, Paul J Utz, Purvesh Khatri, Grant Dorsey, Moses Kamya, Michelle J Boyle, Margaret E Feeney, Isaac Ssewanyana, Prasanna Jagannathan
Malaria-driven expansion of adaptive-like functional CD56-negative NK cells correlates with clinical immunity to malaria. Science translational medicine 15 (680) (2023)
Maureen Ty, Shenghuan Sun, Perri C Callaway, John Rek, Kathleen Dantzler Press, Kattria van der Ploeg, Jason Nideffer, Zicheng Hu, Sandy Klemm, William J Greenleaf, Michele Donato, Stephen Tukwasibwe, Emmanuel Arinaitwe, Felistas Nankya, Kenneth Musinguzi, Dean Andrew, Lauren de la Parte, Diego Martinez Mori, Savannah Nicole Lewis, Saki Takahashi, Isabel Rodriguez-Barraquer, Bryan Greenhouse, Catherine A Blish, Paul J Utz, Purvesh Khatri, Grant Dorsey, Moses Kamya, Michelle J Boyle, Margaret E Feeney, Isaac Ssewanyana, Prasanna Jagannathan
Malaria-driven expansion of adaptive-like functional CD56-negative NK cells correlates with clinical immunity to malaria. Science translational medicine 15 (680) (2023)
Benjamin Ober-Reynolds, Chen Wang, Justin M Ko, Eon J Rios, Sumaira Z Aasi, Mark M Davis, Anthony E Oro, William J Greenleaf
Integrated single-cell chromatin and transcriptomic analyses of human scalp identify gene-regulatory programs and critical cell types for hair and skin diseases. Nature genetics (2023)
Stephano S Mello, Brittany M Flowers, Pawel K Mazur, James J Lee, Fabian Müller, Sarah K Denny, Sofia Ferreira, Kathryn J Hanson, Seung K Kim, William J Greenleaf, Laura D Wood, Laura D Attardi
Multifaceted role for p53 in pancreatic cancer suppression. Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Taihei Fujimori, Carolina Rios-Martinez, Abby R Thurm, Michaela M Hinks, Benjamin R Doughty, Joydeb Sinha, Derek Le, Antonina Hafner, William J Greenleaf, Alistair Nicol Boettiger, Lacramioara Bintu
Single-cell chromatin state transitions during epigenetic memory formation. bioRxiv : the preprint server for biology (2023)
Florian V De Rop, Gert Hulselmans, Christopher Flerin, Paula Soler-Vila, Albert Rafels, Valerie Christiaens, Carmen Bravo González-Blas, Domenica Marchese, Ginevra Caratù, Suresh Poovathingal, Orit Rozenblatt-Rosen, Michael Slyper, Wendy Luo, Christoph Muus, Fabiana M Duarte, Rojesh Shrestha, S Tansu Bagdatli, M Ryan Corces, Lira Mamanova, Andrew Knights, Kerstin B Meyer, Ryan M Mulqueen, Akram Taherinasab, Patrick Maschmeyer, Joern Pezoldt, Camille Lucie Germaine Lambert, Marta Iglesias, Sebastián R Najle, Zain Y Dossani, Luciano G Martelotto, Zachary Daniel Burkett, Ronald Lebofsky, José Ignacio Martin-Subero, Satish Pillai, Arnau Sebé-Pedrós, Bart Deplancke, Sarah A Teichmann, Leif S Ludwig, Theodore P Braun, Andrew C Adey, William J Greenleaf, Jason D Buenrostro, Aviv Regev, Stein Aerts, Holger Heyn
Systematic benchmarking of single-cell ATAC-sequencing protocols. Nature biotechnology (2023)
Eitan Moses, Tehila Atlan, Xue Sun, Roman Franek, Atif Siddiqui, Georgi K Marinov, Sagiv Shifman, David M Zucker, Adi Oron-Gottesman, William J Greenleaf, Ehud Cohen, Oren Ram, Itamar Harel
The germline regulates longevity and somatic repair in a sex-specific manner. bioRxiv : the preprint server for biology (2023)
John W Hickey, Winston R Becker, Stephanie A Nevins, Aaron Horning, Almudena Espin Perez, Chenchen Zhu, Bokai Zhu, Bei Wei, Roxanne Chiu, Derek C Chen, Daniel L Cotter, Edward D Esplin, Annika K Weimer, Chiara Caraccio, Vishal Venkataraaman, Christian M Schürch, Sarah Black, Maria Brbic, Kaidi Cao, Shuxiao Chen, Weiruo Zhang, Emma Monte, Nancy R Zhang, Zongming Ma, Jure Leskovec, Zhengyan Zhang, Shin Lin, Teri Longacre, Sylvia K Plevritis, Yiing Lin, Garry P Nolan, William J Greenleaf, Michael Paul Snyder
Organization of the human intestine at single-cell resolution. Nature 619 (7970) (2023)
Jimena Andersen, Nicholas Thom, Jennifer L Shadrach, Xiaoyu Chen, Massimo Mario Onesto, Neal D Amin, Se-Jin Yoon, Li Li, William J Greenleaf, Fabian Müller, Anca M Pașca, Julia A Kaltschmidt, Sergiu P Pașca
Single-cell transcriptomic landscape of the developing human spinal cord. Nature neuroscience 26 (5) (2023)
Connor A Horton, Amr M Alexandari, Michael G B Hayes, Emil Marklund, Julia M Schaepe, Arjun K Aditham, Nilay Shah, Peter H Suzuki, Avanti Shrikumar, Ariel Afek, William J Greenleaf, Raluca Gordân, Julia Zeitlinger, Anshul Kundaje, Polly Morrell Fordyce
Short tandem repeats bind transcription factors to tune eukaryotic gene expression. Science (New York, N.Y.) 381 (6664) (2023)
Jimena Andersen, Nicholas Thom, Jennifer L Shadrach, Xiaoyu Chen, Massimo Mario Onesto, Neal D Amin, Se-Jin Yoon, Li Li, William J Greenleaf, Fabian Müller, Anca M Pașca, Julia A Kaltschmidt, Sergiu P Pașca
Single-cell transcriptomic landscape of the developing human spinal cord. Nature neuroscience (2023)
Jimena Andersen, Nicholas Thom, Jennifer L Shadrach, Xiaoyu Chen, Massimo Mario Onesto, Neal D Amin, Se-Jin Yoon, Li Li, William J Greenleaf, Fabian Müller, Anca M Pașca, Julia A Kaltschmidt, Sergiu P Pașca
Single-cell transcriptomic landscape of the developing human spinal cord. Nature neuroscience (2023)
Maureen Ty, Shenghuan Sun, Perri C Callaway, John Rek, Kathleen Dantzler Press, Kattria van der Ploeg, Jason Nideffer, Zicheng Hu, Sandy Klemm, William J Greenleaf, Michele Donato, Stephen Tukwasibwe, Emmanuel Arinaitwe, Felistas Nankya, Kenneth Musinguzi, Dean Andrew, Lauren de la Parte, Diego Martinez Mori, Savannah Nicole Lewis, Saki Takahashi, Isabel Rodriguez-Barraquer, Bryan Greenhouse, Catherine A Blish, Paul J Utz, Purvesh Khatri, Grant Dorsey, Moses Kamya, Michelle J Boyle, Margaret E Feeney, Isaac Ssewanyana, Prasanna Jagannathan
Malaria-driven expansion of adaptive-like functional CD56-negative NK cells correlates with clinical immunity to malaria. Science translational medicine 15 (680) (2023)
Maureen Ty, Shenghuan Sun, Perri C Callaway, John Rek, Kathleen Dantzler Press, Kattria van der Ploeg, Jason Nideffer, Zicheng Hu, Sandy Klemm, William J Greenleaf, Michele Donato, Stephen Tukwasibwe, Emmanuel Arinaitwe, Felistas Nankya, Kenneth Musinguzi, Dean Andrew, Lauren de la Parte, Diego Martinez Mori, Savannah Nicole Lewis, Saki Takahashi, Isabel Rodriguez-Barraquer, Bryan Greenhouse, Catherine A Blish, Paul J Utz, Purvesh Khatri, Grant Dorsey, Moses Kamya, Michelle J Boyle, Margaret E Feeney, Isaac Ssewanyana, Prasanna Jagannathan
Malaria-driven expansion of adaptive-like functional CD56-negative NK cells correlates with clinical immunity to malaria. Science translational medicine 15 (680) (2023)
Maureen Ty, Shenghuan Sun, Perri C Callaway, John Rek, Kathleen Dantzler Press, Kattria van der Ploeg, Jason Nideffer, Zicheng Hu, Sandy Klemm, William J Greenleaf, Michele Donato, Stephen Tukwasibwe, Emmanuel Arinaitwe, Felistas Nankya, Kenneth Musinguzi, Dean Andrew, Lauren de la Parte, Diego Martinez Mori, Savannah Nicole Lewis, Saki Takahashi, Isabel Rodriguez-Barraquer, Bryan Greenhouse, Catherine A Blish, Paul J Utz, Purvesh Khatri, Grant Dorsey, Moses Kamya, Michelle J Boyle, Margaret E Feeney, Isaac Ssewanyana, Prasanna Jagannathan
Malaria-driven expansion of adaptive-like functional CD56-negative NK cells correlates with clinical immunity to malaria. Science translational medicine 15 (680) (2023)
Stephano S Mello, Brittany M Flowers, Pawel K Mazur, James J Lee, Fabian Müller, Sarah K Denny, Sofia Ferreira, Kathryn J Hanson, Seung K Kim, William J Greenleaf, Laura D Wood, Laura D Attardi
Multifaceted role for p53 in pancreatic cancer suppression. Proceedings of the National Academy of Sciences of the United States of America 120 (10) (2023)
Maureen Ty, Shenghuan Sun, Perri C Callaway, John Rek, Kathleen Dantzler Press, Kattria van der Ploeg, Jason Nideffer, Zicheng Hu, Sandy Klemm, William J Greenleaf, Michele Donato, Stephen Tukwasibwe, Emmanuel Arinaitwe, Felistas Nankya, Kenneth Musinguzi, Dean Andrew, Lauren de la Parte, Diego Martinez Mori, Savannah Nicole Lewis, Saki Takahashi, Isabel Rodriguez-Barraquer, Bryan Greenhouse, Catherine A Blish, Paul J Utz, Purvesh Khatri, Grant Dorsey, Moses Kamya, Michelle J Boyle, Margaret E Feeney, Isaac Ssewanyana, Prasanna Jagannathan
Malaria-driven expansion of adaptive-like functional CD56-negative NK cells correlates with clinical immunity to malaria. Science translational medicine 15 (680) (2023)
Jimena Andersen, Nicholas Thom, Jennifer L Shadrach, Xiaoyu Chen, Massimo Mario Onesto, Neal D Amin, Se-Jin Yoon, Li Li, William J Greenleaf, Fabian Müller, Anca M Pașca, Julia A Kaltschmidt, Sergiu P Pașca
Single-cell transcriptomic landscape of the developing human spinal cord. Nature neuroscience 26 (5) (2023)
Charles Limouse, Owen Kabnick Smith, David Jukam, Kelsey A Fryer, William J Greenleaf, Aaron F Straight
Global mapping of RNA-chromatin contacts reveals a proximity-dominated connectivity model for ncRNA-gene interactions. Nature communications 14 (1) (2023)
Jimena Andersen, Nicholas Thom, Jennifer L Shadrach, Xiaoyu Chen, Massimo Mario Onesto, Neal D Amin, Se-Jin Yoon, Li Li, William J Greenleaf, Fabian Müller, Anca M Pașca, Julia A Kaltschmidt, Sergiu P Pașca
Single-cell transcriptomic landscape of the developing human spinal cord. Nature neuroscience 26 (5) (2023)
Emil Marklund, Yuxi Ke, William J Greenleaf
High-throughput biochemistry in RNA sequence space: predicting structure and function. Nature reviews. Genetics (2023)
Christoph Sadee, Lauren D Hagler, Winston R Becker, Inga Jarmoskaite, Pavanapuresan P Vaidyanathan, Sarah K Denny, William J Greenleaf, Daniel Herschlag
A comprehensive thermodynamic model for RNA binding by the Saccharomyces cerevisiae Pumilio protein PUF4. Nature communications 13 (1) (2022)
Huimin Zhang, Rohit R Jadhav, Wenqiang Cao, Isabel N Goronzy, Tuantuan V Zhao, Jun Jin, Shozo Ohtsuki, Zhao-Lan Hu, Jose Morales, William J Greenleaf, Cornelia M Weyand, Jorg J Goronzy
Aging-associated HELIOS deficiency in naive CD4 + T cells alters chromatin remodeling and promotes effector cell responses. Nature immunology 24 (1) (2022)
Winston R Becker, Stephanie A Nevins, Derek C Chen, Roxanne Chiu, Aaron M Horning, Tuhin K Guha, Rozelle Laquindanum, Meredith Mills, Hassan Chaib, Uri Ladabaum, Teri Longacre, Jeanne Shen, Edward D Esplin, Anshul Kundaje, James M Ford, Christina Curtis, Michael Paul Snyder, William J Greenleaf
Single-cell analyses define a continuum of cell state and composition changes in the malignant transformation of polyps to colorectal cancer. Nature genetics 54 (7) (2022)
Huimin Zhang, Rohit R Jadhav, Wenqiang Cao, Isabel N Goronzy, Tuantuan V Zhao, Jun Jin, Shozo Ohtsuki, Zhao-Lan Hu, Jose Morales, William J Greenleaf, Cornelia M Weyand, Jorg J Goronzy
Aging-associated HELIOS deficiency in naive CD4 + T cells alters chromatin remodeling and promotes effector cell responses. Nature immunology (2022)
Huimin Zhang, Rohit R Jadhav, Wenqiang Cao, Isabel N Goronzy, Tuantuan V Zhao, Jun Jin, Shozo Ohtsuki, Zhao-Lan Hu, Jose Morales, William J Greenleaf, Cornelia M Weyand, Jorg J Goronzy
Aging-associated HELIOS deficiency in naive CD4 + T cells alters chromatin remodeling and promotes effector cell responses. Nature immunology 24 (1) (2022)
Masao Hashimoto, Koichi Araki, Maria Andrea Cardenas, Peng Li, Rohit R Jadhav, Haydn T Kissick, William H Hudson, Donald J McGuire, Rebecca C Obeng, Andreas Wieland, Judong Lee, Daniel T McManus, James L Ross, Se Jin Im, Junghwa Lee, Jian-Xin Lin, Bin Hu, Erin E West, Christopher D Scharer, Gordon J Freeman, Arlene H Sharpe, Suresh R Ramalingam, Alex Pellerin, Volker Teichgräber, William J Greenleaf, Christiane Neumann, Jorg J Goronzy, Pablo Umaña, Warren J Leonard, Kendall A Smith, Rajesh M Valanparambil
PD-1 combination therapy with IL-2 modifies CD8 + T cell exhaustion program. Nature 610 (7930) (2022)
Jacob W Freimer, Oren Shaked, Sahin Naqvi, Nicholas A Sinnott-Armstrong, Arwa Kathiria, Christian M Garrido, Amy F Chen, Jessica T Cortez, William J Greenleaf, Jonathan K Pritchard, Alexander Marson
Systematic discovery and perturbation of regulatory genes in human T cells reveals the architecture of immune networks. Nature genetics 54 (8) (2022)
Huimin Zhang, Rohit R Jadhav, Wenqiang Cao, Isabel N Goronzy, Tuantuan V Zhao, Jun Jin, Shozo Ohtsuki, Zhao-Lan Hu, Jose Morales, William J Greenleaf, Cornelia M Weyand, Jorg J Goronzy
Aging-associated HELIOS deficiency in naive CD4 + T cells alters chromatin remodeling and promotes effector cell responses. Nature immunology 24 (1) (2022)
Huimin Zhang, Rohit R Jadhav, Wenqiang Cao, Isabel N Goronzy, Tuantuan V Zhao, Jun Jin, Shozo Ohtsuki, Zhao-Lan Hu, Jose Morales, William J Greenleaf, Cornelia M Weyand, Jorg J Goronzy
Aging-associated HELIOS deficiency in naive CD4 + T cells alters chromatin remodeling and promotes effector cell responses. Nature immunology 24 (1) (2022)
King L Hung, Jens Luebeck, Siavash R Dehkordi, Caterina I Colón, Rui Li, Ivy Tsz-Lo Wong, Ceyda Coruh, Prashanthi Dharanipragada, Shirley H Lomeli, Natasha E Weiser, Gatien Moriceau, Xiao Zhang, Chris Bailey, Kathleen E Houlahan, Wenting Yang, Rocio Chamorro González, Charles Swanton, Christina Curtis, Mariam Jamal-Hanjani, Anton G Henssen, Julie A Law, William J Greenleaf, Roger S Lo, Paul S Mischel, Vineet Bafna, Howard Y Chang
Targeted profiling of human extrachromosomal DNA by CRISPR-CATCH. Nature genetics 54 (11) (2022)
Huimin Zhang, Rohit R Jadhav, Wenqiang Cao, Isabel N Goronzy, Tuantuan V Zhao, Jun Jin, Shozo Ohtsuki, Zhao-Lan Hu, Jose Morales, William J Greenleaf, Cornelia M Weyand, Jorg J Goronzy
Aging-associated HELIOS deficiency in naive CD4 + T cells alters chromatin remodeling and promotes effector cell responses. Nature immunology 24 (1) (2022)
Johan O L Andreasson, Michael R Gotrik, Michelle J Wu, Hannah K Wayment-Steele, Wipapat Kladwang, Fernando Portela, Roger Wellington-Oguri, null null, Rachel J Hagey, William J Greenleaf
Crowdsourced RNA design discovers diverse, reversible, efficient, self-contained molecular switches. Proceedings of the National Academy of Sciences of the United States of America 119 (18) (2022)
Huimin Zhang, Rohit R Jadhav, Wenqiang Cao, Isabel N Goronzy, Tuantuan V Zhao, Jun Jin, Shozo Ohtsuki, Zhao-Lan Hu, Jose Morales, William J Greenleaf, Cornelia M Weyand, Jorg J Goronzy
Aging-associated HELIOS deficiency in naive CD4 + T cells alters chromatin remodeling and promotes effector cell responses. Nature immunology (2022)
Jeffrey M Granja, M Ryan Corces, Sarah E Pierce, S Tansu Bagdatli, Hani Choudhry, Howard Y Chang, William J Greenleaf
ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis. Nature genetics 53 (3) (2021)
Hamish W King, Kristen L Wells, Zohar Shipony, Arwa S Kathiria, Lisa E Wagar, Caleb A Lareau, Nara Orban, Robson Capasso, Mark M Davis, Lars M Steinmetz, Louisa Katherine James, William J Greenleaf
Integrated single-cell transcriptomics and epigenomics reveals strong germinal center-associated etiology of autoimmune risk loci. Science immunology 6 (64) (2021)
Evan August Boyle, Winston R Becker, Hua B Bai, Janice S Chen, Jennifer A Doudna, William J Greenleaf
Quantification of Cas9 binding and cleavage across diverse guide sequences maps landscapes of target engagement. Science advances 7 (8) (2021)
Sarah E Pierce, Jeffrey M Granja, William J Greenleaf
High-throughput single-cell chromatin accessibility CRISPR screens enable unbiased identification of regulatory networks in cancer. Nature communications 12 (1) (2021)
Steve L Bonilla, Sarah K Denny, John H Shin, Aurora Alvarez-Buylla, William J Greenleaf, Daniel Herschlag
High-throughput dissection of the thermodynamic and conformational properties of a ubiquitous class of RNA tertiary contact motifs. Proceedings of the National Academy of Sciences of the United States of America 118 (33) (2021)
Aaron J Wilk, Madeline J Lee, Bei Wei, Benjamin E Parks, Ruoxi Pi, Giovanny J Martínez-Colón, Thanmayi Ranganath, Nancy Q Zhao, Shalina Taylor, Winston R Becker, null null, David Jimenez-Morales, Andra L Blomkalns, Ruth O'Hara, Euan A Ashley, Kari Christine Nadeau, Samuel Yang, Susan P Holmes, Marlene Rabinovitch, Angela J Rogers, William J Greenleaf, Catherine A Blish
Multi-omic profiling reveals widespread dysregulation of innate immunity and hematopoiesis in COVID-19. The Journal of experimental medicine 218 (8) (2021)
Sarah E Pierce, Jeffrey M Granja, M Ryan Corces, Jennifer J Brady, Min K Tsai, Aubrey B Pierce, Rui Tang, Pauline Chu, David M Feldser, Howard Y Chang, Michael C Bassik, William J Greenleaf, Monte M Winslow
LKB1 inactivation modulates chromatin accessibility to drive metastatic progression. Nature cell biology 23 (8) (2021)
David G Gennert, Rachel C Lynn, Jeff M Granja, Evan W Weber, Maxwell R Mumbach, Yang Zhao, Zhana Duren, Elena Sotillo, William J Greenleaf, Wing Hung Wong, Ansuman T Satpathy, Crystal L Mackall, Howard Y Chang
Dynamic chromatin regulatory landscape of human CAR T cell exhaustion. Proceedings of the National Academy of Sciences of the United States of America 118 (30) (2021)
Daniel S Kim, Viviana I Risca, David L Reynolds, James Chappell, Adam J Rubin, Namyoung Jung, Laura K H Donohue, Vanessa Lopez-Pajares, Arwa Kathiria, Minyi Shi, Zhixin Zhao, Harsh Deep, Mahfuza Sharmin, Deepti Rao, Shin Lin, Howard Y Chang, Michael Paul Snyder, William J Greenleaf, Anshul Kundaje, Paul A Khavari
The dynamic, combinatorial cis-regulatory lexicon of epidermal differentiation. Nature genetics 53 (11) (2021)
Georgi K Marinov, Alexandro E Trevino, Tingting Xiang, Anshul Kundaje, Arthur R Grossman, William J Greenleaf
Transcription-dependent domain-scale three-dimensional genome organization in the dinoflagellate Breviolum minutum. Nature genetics 53 (5) (2021)
Jacob A Blum, Sandy Klemm, Jennifer L Shadrach, Kevin A Guttenplan, Lisa Nakayama, Arwa Kathiria, Phuong T Hoang, Olivia Gautier, Julia A Kaltschmidt, William J Greenleaf, Aaron D Gitler
Single-cell transcriptomic analysis of the adult mouse spinal cord reveals molecular diversity of autonomic and skeletal motor neurons. Nature neuroscience 24 (4) (2021)
Alexandro E Trevino, Nicholas A Sinnott-Armstrong, Jimena Andersen, Se-Jin Yoon, Nina Huber, Jonathan K Pritchard, Howard Y Chang, William J Greenleaf, Sergiu P Pașca
Chromatin accessibility dynamics in a model of human forebrain development. Science (New York, N.Y.) 367 (6476) (2020)
M Ryan Corces, Anna Shcherbina, Soumya Kundu, Michael J Gloudemans, Laure Frésard, Jeffrey M Granja, Bryan H Louie, Tiffany Eulalio, Shadi Shams, S Tansu Bagdatli, Maxwell R Mumbach, Boxiang Liu, Kathleen S Montine, William J Greenleaf, Anshul Kundaje, Stephen B Montgomery, Howard Y Chang, Thomas J Montine
Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer's and Parkinson's diseases. Nature genetics 52 (11) (2020)
Zohar Shipony, Georgi K Marinov, Matthew P Swaffer, Nicholas A Sinnott-Armstrong, Jan M Skotheim, Anshul Kundaje, William J Greenleaf
Long-range single-molecule mapping of chromatin accessibility in eukaryotes. Nature methods 17 (3) (2020)
Johan O L Andreasson, Andrew Savinov, Steven M Block, William J Greenleaf
Comprehensive sequence-to-function mapping of cofactor-dependent RNA catalysis in the glmS ribozyme. Nature communications 11 (1) (2020)
Kalli Kappel, Inga Jarmoskaite, Pavanapuresan P Vaidyanathan, William J Greenleaf, Daniel Herschlag, Rachel J Hagey
Blind tests of RNA-protein binding affinity prediction. Proceedings of the National Academy of Sciences of the United States of America 116 (17) (2019)
Maxwell R Mumbach, Jeffrey M Granja, Ryan A Flynn, Caitlin M Roake, Ansuman T Satpathy, Adam J Rubin, Yanyan Qi, Zhaozhao Jiang, Shadi Shams, Bryan H Louie, Jimmy K Guo, David G Gennert, M Ryan Corces, Paul A Khavari, Maninjay K Atianand, Steven E Artandi, Katherine A Fitzgerald, William J Greenleaf, Howard Y Chang
HiChIRP reveals RNA-associated chromosome conformation. Nature methods 16 (6) (2019)
Ansuman T Satpathy, Jeffrey M Granja, Kathryn E Yost, Yanyan Qi, Francesca Meschi, Geoffrey P McDermott, Brett N Olsen, Maxwell R Mumbach, Sarah E Pierce, M Ryan Corces, Preyas Shah, Jason C Bell, Darisha Jhutty, Corey M Nemec, Jean Wang, Li Wang, Yifeng Yin, Paul G Giresi, Anne Lynn S Chang, Grace X Y Zheng, William J Greenleaf, Howard Y Chang
Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion. Nature biotechnology 37 (8) (2019)
Joseph D Yesselman, Sarah K Denny, Namita Bisaria, Daniel Herschlag, William J Greenleaf, Rachel J Hagey
Sequence-dependent RNA helix conformational preferences predictably impact tertiary structure formation. Proceedings of the National Academy of Sciences of the United States of America 116 (34) (2019)

William J Greenleaf.css-eqlu8i{font-size:small;padding-left:4px;} (William Greenleaf)

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William J Greenleaf (William Greenleaf)