Alexandr A Kalinin (Alexandr Kalinin)

Scopus Author ID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 13

Top Venues

Nature methods

Scientific reports

bioRxiv : the preprint server for biology

PLoS computational biology

University of Michigan

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Michigan Sep 01 2013 - Dec 31 2018

United States

PhD Candidate :: Department of Computational Medicine and Bioinformatics

Publications

Alexandr A Kalinin, John Arevalo, Loan Vulliard, Erik Serrano, Hillary Tsang, Michael Bornholdt, Bartek Rajwa, Anne E Carpenter, Gregory P Way, Shantanu Singh
A versatile information retrieval framework for evaluating profile strength and similarity. bioRxiv : the preprint server for biology (2024)
Srinivas Niranj Chandrasekaran, Beth A Cimini, Amy Goodale, Lisa Miller, Maria Kost-Alimova, Nasim Jamali, John G Doench, Briana Fritchman, Adam Skepner, Michelle Melanson, Alexandr A Kalinin, John Arevalo, Marzieh Haghighi, Juan C Caicedo, Daniel Kuhn, Desiree Hernandez, James Berstler, Hamdah Shafqat-Abbasi, David E Root, Susanne E Swalley, Sakshi Garg, Shantanu Singh, Anne E Carpenter
Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations. Nature methods 21 (6) (2024)
Alexandr A Kalinin, John Arevalo, Loan Vulliard, Erik Serrano, Hillary Tsang, Michael Bornholdt, Bartek Rajwa, Anne E Carpenter, Gregory P Way, Shantanu Singh
A versatile information retrieval framework for evaluating profile strength and similarity. bioRxiv : the preprint server for biology (2024)
Srinivas Niranj Chandrasekaran, Beth A Cimini, Amy Goodale, Lisa Miller, Maria Kost-Alimova, Nasim Jamali, John G Doench, Briana Fritchman, Adam Skepner, Michelle Melanson, Alexandr A Kalinin, John Arevalo, Marzieh Haghighi, Juan C Caicedo, Daniel Kuhn, Desiree Hernandez, James Berstler, Hamdah Shafqat-Abbasi, David E Root, Susanne E Swalley, Sakshi Garg, Shantanu Singh, Anne E Carpenter
Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations. Nature methods (2024)
Alexandr A Kalinin, John Arevalo, Loan Vulliard, Erik Serrano, Hillary Tsang, Michael Bornholdt, Bartek Rajwa, Anne E Carpenter, Gregory P Way, Shantanu Singh
A versatile information retrieval framework for evaluating profile strength and similarity. bioRxiv : the preprint server for biology (2024)
Srinivas Niranj Chandrasekaran, Beth A Cimini, Amy Goodale, Lisa Miller, Maria Kost-Alimova, Nasim Jamali, John G Doench, Briana Fritchman, Adam Skepner, Michelle Melanson, Alexandr A Kalinin, John Arevalo, Marzieh Haghighi, Juan C Caicedo, Daniel Kuhn, Desiree Hernandez, James Berstler, Hamdah Shafqat-Abbasi, David E Root, Susanne E Swalley, Sakshi Garg, Shantanu Singh, Anne E Carpenter
Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations. Nature methods 21 (6) (2024)
Srinivas Niranj Chandrasekaran, Beth A Cimini, Amy Goodale, Lisa Miller, Maria Kost-Alimova, Nasim Jamali, John G Doench, Briana Fritchman, Adam Skepner, Michelle Melanson, Alexandr A Kalinin, John Arevalo, Marzieh Haghighi, Juan C Caicedo, Daniel Kuhn, Desiree Hernandez, James Berstler, Hamdah Shafqat-Abbasi, David E Root, Susanne E Swalley, Sakshi Garg, Shantanu Singh, Anne E Carpenter
Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations. Nature methods 21 (6) (2024)
Srinivas Niranj Chandrasekaran, Beth A Cimini, Amy Goodale, Lisa Miller, Maria Kost-Alimova, Nasim Jamali, John G Doench, Briana Fritchman, Adam Skepner, Michelle Melanson, Alexandr A Kalinin, John Arevalo, Marzieh Haghighi, Juan C Caicedo, Daniel Kuhn, Desiree Hernandez, James Berstler, Hamdah Shafqat-Abbasi, David E Root, Susanne E Swalley, Sakshi Garg, Shantanu Singh, Anne E Carpenter
Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations. Nature methods 21 (6) (2024)
Benjamin D Lee, Anthony Gitter, Casey S Greene, Sebastian Raschka, Finlay Maguire, Alexander J Titus, Michael D Kessler, Alexandra J Lee, Marc G Chevrette, Paul Allen Stewart, Thiago Britto-Borges, Evan M Cofer, Kun-Hsing Yu, Juan Jose Carmona, Elana J Fertig, Alexandr A Kalinin, Brandon Signal, Benjamin J Lengerich, Timothy J Triche, Simina M Boca
Ten quick tips for deep learning in biology. PLoS computational biology 18 (3) (2022)
Travers Ching, Daniel Scott Himmelstein, Brett K Beaulieu-Jones, Alexandr A Kalinin, Brian T Do, Gregory P Way, Enrico Ferrero, Paul-Michael Agapow, Michael Zietz, Michael M Hoffman, Wei Xie, Gail L Rosen, Benjamin J Lengerich, Johnny Israeli, Jack Lanchantin, Stephen Woloszynek, Anne E Carpenter, Avanti Shrikumar, Jinbo Xu, Evan M Cofer, Christopher A Lavender, Srinivas C Turaga, Amr M Alexandari, Zhiyong Lu, David J Harris, Dave DeCaprio, Yanjun Qi, Anshul Kundaje, Yifan Peng, Laura K Wiley, Marwin H S Segler, Simina M Boca, S Joshua Swamidass, Austin Huang, Anthony Gitter, Casey S Greene
Opportunities and obstacles for deep learning in biology and medicine. Journal of the Royal Society, Interface 15 (141) (2019)
Alexandr A Kalinin, Ari Allyn-Feuer, Alex Ade, Gordon-Victor Fon, Walter Meixner, David Dilworth, Syed S Husain, Jeffrey R de Wet, Gerald A Higgins, Gen Zheng, Amy Creekmore, John W Wiley, James E Verdone, Robert W Veltri, Kenneth J Pienta, Donald S Coffey, Brian D Athey, Ivo D Dinov
3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification. Scientific reports 8 (1) (2018)
Alexandr A Kalinin, Ari Allyn-Feuer, Alex Ade, Gordon-Victor Fon, Walter Meixner, David Dilworth, Syed S Husain, Jeffrey R de Wet, Gerald A Higgins, Gen Zheng, Amy Creekmore, John W Wiley, James E Verdone, Robert W Veltri, Kenneth J Pienta, Donald S Coffey, Brian D Athey, Ivo D Dinov
Publisher Correction: 3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification. Scientific reports 8 (1) (2018)
Chao Gao, Hanbo Sun, Tuo Wang, Ming Tang, Nicolaas I Bohnen, Martijn L T M Müller, Talia Herman, Nir Giladi, Alexandr A Kalinin, Cathie Spino, William Dauer, Jeffrey M Hausdorff, Ivo D Dinov
Model-based and Model-free Machine Learning Techniques for Diagnostic Prediction and Classification of Clinical Outcomes in Parkinson's Disease. Scientific reports 8 (1) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Alexandr A Kalinin (Alexandr Kalinin)