Andrea Zuccolo

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 22

Top Venues

Nature communications

The Plant journal : for cell and molecular biology

G3 (Bethesda, Md.)

Journal of experimental botany

Scuola Superiore Sant'Anna

Università degli Studi di Udine (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Scuola Superiore Sant'Anna Dec 20 2011

Italy

Assistant Professor :: Life Sciences

Arizona Genomics Institute Nov 01 2004 - May 10 2011

United States

Coordinator of the Bioinformatics group :: Plant Sciences

Education History

Università degli Studi di Udine Feb 01 2000 - Jun 10 2003

Italy

PHD :: DPVTA

Università degli Studi di Trieste Oct 01 1990 - Mar 15 1998

Italy

MSC :: Life Sciences

Publications

Hendrik N J Kuijer, Jian You Wang, Salim Bougouffa, Michael Abrouk, Muhammad Jamil, Roberto Incitti, Intikhab S Alam, Aparna Balakrishna, Derry Alvarez, Cristina Votta, Guan-Ting Erica Chen, Claudio Martínez, Andrea Zuccolo, Lamis Berqdar, Salim Sioud, Valentina Fiorilli, Angel R de Lera, Luisa Lanfranco, Takashi Gojobori, Rod A Wing, Simon G Krattinger, Xin Gao, Salim Al-Babili
Chromosome-scale pearl millet genomes reveal CLAMT1b as key determinant of strigolactone pattern and Striga susceptibility. Nature communications 15 (1) (2024)
Hendrik N J Kuijer, Jian You Wang, Salim Bougouffa, Michael Abrouk, Muhammad Jamil, Roberto Incitti, Intikhab S Alam, Aparna Balakrishna, Derry Alvarez, Cristina Votta, Guan-Ting Erica Chen, Claudio Martínez, Andrea Zuccolo, Lamis Berqdar, Salim Sioud, Valentina Fiorilli, Angel R de Lera, Luisa Lanfranco, Takashi Gojobori, Rod A Wing, Simon G Krattinger, Xin Gao, Salim Al-Babili
Chromosome-scale pearl millet genomes reveal CLAMT1b as key determinant of strigolactone pattern and Striga susceptibility. Nature communications 15 (1) (2024)
Hendrik N J Kuijer, Jian You Wang, Salim Bougouffa, Michael Abrouk, Muhammad Jamil, Roberto Incitti, Intikhab S Alam, Aparna Balakrishna, Derry Alvarez, Cristina Votta, Guan-Ting Erica Chen, Claudio Martínez, Andrea Zuccolo, Lamis Berqdar, Salim Sioud, Valentina Fiorilli, Angel R de Lera, Luisa Lanfranco, Takashi Gojobori, Rod A Wing, Simon G Krattinger, Xin Gao, Salim Al-Babili
Chromosome-scale pearl millet genomes reveal CLAMT1b as key determinant of strigolactone pattern and Striga susceptibility. Nature communications 15 (1) (2024)
Hendrik N J Kuijer, Jian You Wang, Salim Bougouffa, Michael Abrouk, Muhammad Jamil, Roberto Incitti, Intikhab S Alam, Aparna Balakrishna, Derry Alvarez, Cristina Votta, Guan-Ting Erica Chen, Claudio Martínez, Andrea Zuccolo, Lamis Berqdar, Salim Sioud, Valentina Fiorilli, Angel R de Lera, Luisa Lanfranco, Takashi Gojobori, Rod A Wing, Simon G Krattinger, Xin Gao, Salim Al-Babili
Chromosome-scale pearl millet genomes reveal CLAMT1b as key determinant of strigolactone pattern and Striga susceptibility. Nature communications 15 (1) (2024)
Maria Ventimiglia, Giovanni Marturano, Alberto Vangelisti, Gabriele Usai, Samuel Simoni, Andrea Cavallini, Tommaso Giordani, Lucia Natali, Andrea Zuccolo, Flavia Mascagni
Genome-wide identification and characterization of exapted transposable elements in the large genome of sunflower (Helianthus annuus L.). The Plant journal : for cell and molecular biology 113 (4) (2023)
Yong Zhou, Zhichao Yu, Dmytro Chebotarov, Kapeel Chougule, Zhenyuan Lu, Luis F Rivera, Nagarajan Kathiresan, Noor Al-Bader, Nahed Mohammed, Aseel Alsantely, Saule Mussurova, João Santos, Manjula Thimma, Maxim Troukhan, Alice Fornasiero, Carl D Green, Copetti Dario, David A Kudrna, Victor Llaca, Mathias Lorieux, Andrea Zuccolo, Doreen Ware, Kenneth L McNally, Jianwei Zhang, Rod A Wing
Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice. Nature communications 14 (1) (2023)
Andrea Zuccolo, Sara Mfarrej, Mirko Celii, Saule Mussurova, Luis F Rivera, Victor Llaca, Nahed Mohammed, Arnab Pain, Abdulmajeed Fahad Alrefaei, Abdulwahed Fahad Alrefaei, Rod A Wing
The gyrfalcon (Falco rusticolus) genome. G3 (Bethesda, Md.) 13 (3) (2023)
Maria Ventimiglia, Giovanni Marturano, Alberto Vangelisti, Gabriele Usai, Samuel Simoni, Andrea Cavallini, Tommaso Giordani, Lucia Natali, Andrea Zuccolo, Flavia Mascagni
Genome-wide identification and characterization of exapted transposable elements in the large genome of sunflower (Helianthus annuus L.). The Plant journal : for cell and molecular biology 113 (4) (2023)
Maria Ventimiglia, Giovanni Marturano, Alberto Vangelisti, Gabriele Usai, Samuel Simoni, Andrea Cavallini, Tommaso Giordani, Lucia Natali, Andrea Zuccolo, Flavia Mascagni
Genome-wide identification and characterization of exapted transposable elements in the large genome of sunflower (Helianthus annuus L.). The Plant journal : for cell and molecular biology 113 (4) (2023)
Andrea Zuccolo, Sara Mfarrej, Mirko Celii, Saule Mussurova, Luis F Rivera, Victor Llaca, Nahed Mohammed, Arnab Pain, Abdulmajeed Fahad Alrefaei, Abdulwahed Fahad Alrefaei, Rod A Wing
The gyrfalcon (Falcon rusticolus) genome. G3 (Bethesda, Md.) (2023)
Khalid Sedeek, Andrea Zuccolo, Alice Fornasiero, Annika M Weber, Krishnaveni Sanikommu, Sangeetha Sampathkumar, Luis F Rivera, Haroon Butt, Saule Mussurova, Abdulrahman Alhabsi, Nurmansyah Nurmansyah, Elizabeth P Ryan, Rod A Wing, Magdy M Mahfouz
Multi-omics resources for targeted agronomic improvement of pigmented rice. Nature food (2023)
Aseel Alsantely, Rafal M Gutaker, María E Navarrete Rodríguez, Griselda Arrieta-Espinoza, Eric J Fuchs, Antonio Costa de Oliveira, Joe Tohme, Andrea Zuccolo, Rod A Wing, Alice Fornasiero
The International Oryza Map Alignment Project (IOMAP): the Americas-past achievements and future directions. Journal of experimental botany 74 (5) (2023)
Yong Zhou, Zhichao Yu, Dmytro Chebotarov, Kapeel Chougule, Zhenyuan Lu, Luis F Rivera, Nagarajan Kathiresan, Noor Al-Bader, Nahed Mohammed, Aseel Alsantely, Saule Mussurova, João Santos, Manjula Thimma, Maxim Troukhan, Alice Fornasiero, Carl D Green, Copetti Dario, David A Kudrna, Victor Llaca, Mathias Lorieux, Andrea Zuccolo, Doreen Ware, Kenneth L McNally, Jianwei Zhang, Rod A Wing
Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice. Nature communications 14 (1) (2023)
Yong Zhou, Zhichao Yu, Dmytro Chebotarov, Kapeel Chougule, Zhenyuan Lu, Luis F Rivera, Nagarajan Kathiresan, Noor Al-Bader, Nahed Mohammed, Aseel Alsantely, Saule Mussurova, João Santos, Manjula Thimma, Maxim Troukhan, Alice Fornasiero, Carl D Green, Copetti Dario, David A Kudrna, Victor Llaca, Mathias Lorieux, Andrea Zuccolo, Doreen Ware, Kenneth L McNally, Jianwei Zhang, Rod A Wing
Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice. Nature communications 14 (1) (2023)
Maria Ventimiglia, Giovanni Marturano, Alberto Vangelisti, Gabriele Usai, Samuel Simoni, Andrea Cavallini, Tommaso Giordani, Lucia Natali, Andrea Zuccolo, Flavia Mascagni
Genome-wide identification and characterisation of exapted transposable elements in the large genome of sunflower (Helianthus annuus L.). The Plant journal : for cell and molecular biology (2022)
Aseel Alsantely, Rafal M Gutaker, María E Navarrete Rodríguez, Griselda Arrieta-Espinoza, Eric J Fuchs, Antonio Costa de Oliveira, Joe Tohme, Andrea Zuccolo, Rod A Wing, Alice Fornasiero
The International Oryza Map Alignment Project (IOMAP): The Americas - Past achievements and future directions. Journal of experimental botany (2022)
Maria Ventimiglia, Giovanni Marturano, Alberto Vangelisti, Gabriele Usai, Samuel Simoni, Andrea Cavallini, Tommaso Giordani, Lucia Natali, Andrea Zuccolo, Flavia Mascagni
Genome-wide identification and characterization of exapted transposable elements in the large genome of sunflower (Helianthus annuus L.). The Plant journal : for cell and molecular biology (2022)
Yong Zhou, Dmytro Chebotarov, David A Kudrna, Victor Llaca, Seunghee Lee, Shanmugam Rajasekar, Nahed Mohammed, Noor Al-Bader, Chandler Sobel-Sorenson, Praveena Parakkal, Lady Johanna Arbelaez, Natalia Franco, Nickolai Alexandrov, N Ruaraidh Sackville Hamilton, Hei Leung, Ramil P Mauleon, Mathias Lorieux, Andrea Zuccolo, Kenneth L McNally, Jianwei Zhang, Rod A Wing
A platinum standard pan-genome resource that represents the population structure of Asian rice. Scientific data 7 (1) (2020)
Joshua C Stein, Yeisoo Yu, Dario Copetti, Derrick J Zwickl, Li Zhang, Chengjun Zhang, Kapeel Chougule, Dongying Gao, Aiko Iwata, Jose Luis Goicoechea, Sharon Wei, Jun Wang, Yi Liao, Muhua Wang, Julie Jacquemin, Claude Becker, Dave Kudrna, Jianwei Zhang, Carlos E M Londono, Xiang Song, Seunghee Lee, Paul Sanchez, Andrea Zuccolo, Jetty S S Ammiraju, Jayson Talag, Ann Danowitz, Luis F Rivera, Andrea R Gschwend, Christos Noutsos, Cheng-Chieh Wu, Shu-Min Kao, Jhih-Wun Zeng, Fu-Jin Wei, Qiang Zhao, Qi Feng, Moaine El Baidouri, Marie-Christine Carpentier, Eric Lasserre, Richard Cooke, Daniel da Rosa Farias, Luciano Carlos da Maia, Railson S Dos Santos, Kevin G Nyberg, Kenneth L McNally, Ramil Mauleon, Nickolai Alexandrov, Jeremy Schmutz, Dave Flowers, Chuanzhu Fan, Detlef Weigel, Kshirod K Jena, Thomas Wicker, Mingsheng Chen, Bin Han, Robert James Henry, Yue-Ie C Hsing, Nori Kurata, Antonio Costa de Oliveira, Olivier Panaud, Scott A Jackson, Carlos A Machado, Michael J Sanderson, Manyuan Long, Doreen H Ware, Rod A Wing
Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature genetics 50 (2) (2018)
Yao-Cheng Lin, Jing Wang, Nicolas Delhomme, Bastian Schiffthaler, Görel Sundström, Andrea Zuccolo, Björn Nystedt, Torgeir R Hvidsten, Amanda de la Torre, Rosa M Cossu, Marc P Hoeppner, Henrik Lantz, Douglas G Scofield, Neda Zamani, Anna Johansson, Chanaka Mannapperuma, Kathryn M Robinson, Niklas Mähler, Ilia J Leitch, Jaume Pellicer, Eung-Jun Park, Marc Van Montagu, Yves Van de Peer, Manfred Grabherr, Stefan Jansson, Pär K Ingvarsson, Nathaniel R Street
Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen. Proceedings of the National Academy of Sciences of the United States of America 115 (46) (2018)
Thomas Wicker, Yeisoo Yu, Georg Haberer, Klaus F X Mayer, Pradeep Reddy Marri, Steve Rounsley, Mingsheng Chen, Andrea Zuccolo, Olivier Panaud, Rod A Wing, Stefan Roffler
DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses. Nature communications 7 (2016)
Aung Kyaw Lwin, Edoardo Bertolini, Mario Enrico Pè, Andrea Zuccolo
Genomic skimming for identification of medium/highly abundant transposable elements in Arundo donax and Arundo plinii. Molecular genetics and genomics : MGG 292 (1) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Andrea Zuccolo