Doreen H Ware (Doreen Ware)

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 29

Top Venues

The Plant journal : for cell and molecular biology

International journal of molecular sciences

Nature communications

Nature genetics

This page only lists publications with an associated author ORCID identifier.

Publications

Bo Wang, Kapeel Chougule, Yinping Jiao, Andrew Olson, Vivek Kumar, Nicholas Gladman, Jian Huang, Victor Llaca, Kevin Fengler, Xuehong Wei, Liya Wang, Xiaofei Wang, Michael Regulski, Jorg Drenkow, Thomas Gingeras, Chad Hayes, J Scott Armstrong, Yinghua Huang, Zhanguo Xin, Doreen H Ware
High-quality chromosome scale genome assemblies of two important Sorghum inbred lines, Tx2783 and RTx436. NAR genomics and bioinformatics 6 (3) (2024)
Bo Wang, Kapeel Chougule, Yinping Jiao, Andrew Olson, Vivek Kumar, Nicholas Gladman, Jian Huang, Victor Llaca, Kevin Fengler, Xuehong Wei, Liya Wang, Xiaofei Wang, Michael Regulski, Jorg Drenkow, Thomas Gingeras, Chad Hayes, J Scott Armstrong, Yinghua Huang, Zhanguo Xin, Doreen H Ware
High-quality chromosome scale genome assemblies of two important Sorghum inbred lines, Tx2783 and RTx436. NAR genomics and bioinformatics 6 (3) (2024)
Nancy George, Silvie Fexova, Alfonso Munoz Fuentes, Pedro Madrigal, Yalan Bi, Haider Iqbal, Upendra Kumbham, Nadja Francesca Nolte, Lingyun Zhao, Anil S Thanki, Iris D Yu, Jose C Marugan Calles, Karoly Erdos, Liora Vilmovsky, Sandeep R Kurri, Anna Vathrakokoili-Pournara, David Osumi-Sutherland, Ananth Prakash, Shengbo Wang, Marcela K Tello-Ruiz, Sunita Kumari, Doreen H Ware, Damien Goutte-Gattat, Yanhui Hu, Nick Brown, Norbert Perrimon, Juan Antonio Vizcaíno, Tony Burdett, Sarah Teichmann, Alvis Brazma, Irene Papatheodorou
Expression Atlas update: insights from sequencing data at both bulk and single cell level. Nucleic acids research (2023)
Yinping Jiao, Deepti Nigam, Kerrie Barry, Chris Daum, Yuko Yoshinaga, Anna Lipzen, Adil Khan, Sai-Praneeth Parasa, Sharon Wei, Zhenyuan Lu, Marcela K Tello-Ruiz, Pallavi Dhiman, Gloria Burow, Chad Hayes, Junping Chen, Federica Brandizzi, Jenny Mortimer, Doreen H Ware, Zhanguo Xin
A large sequenced mutant library - valuable reverse genetic resource that covers 98% of sorghum genes. The Plant journal : for cell and molecular biology 117 (5) (2023)
Yinping Jiao, Deepti Nigam, Kerrie Barry, Chris Daum, Yuko Yoshinaga, Anna Lipzen, Adil Khan, Sai-Praneeth Parasa, Sharon Wei, Zhenyuan Lu, Marcela K Tello-Ruiz, Pallavi Dhiman, Gloria Burow, Chad Hayes, Junping Chen, Federica Brandizzi, Jenny Mortimer, Doreen H Ware, Zhanguo Xin
A large sequenced mutant library - valuable reverse genetic resource that covers 98% of sorghum genes. The Plant journal : for cell and molecular biology 117 (5) (2023)
Yinping Jiao, Deepti Nigam, Kerrie Barry, Chris Daum, Yuko Yoshinaga, Anna Lipzen, Adil Khan, Sai-Praneeth Parasa, Sharon Wei, Zhenyuan Lu, Marcela K Tello-Ruiz, Pallavi Dhiman, Gloria Burow, Chad Hayes, Junping Chen, Federica Brandizzi, Jenny Mortimer, Doreen H Ware, Zhanguo Xin
A large sequenced mutant library - valuable reverse genetic resource that covers 98% of sorghum genes. The Plant journal : for cell and molecular biology (2023)
Yinping Jiao, Deepti Nigam, Kerrie Barry, Chris Daum, Yuko Yoshinaga, Anna Lipzen, Adil Khan, Sai-Praneeth Parasa, Sharon Wei, Zhenyuan Lu, Marcela K Tello-Ruiz, Pallavi Dhiman, Gloria Burow, Chad Hayes, Junping Chen, Federica Brandizzi, Jenny Mortimer, Doreen H Ware, Zhanguo Xin
A large sequenced mutant library - valuable reverse genetic resource that covers 98% of sorghum genes. The Plant journal : for cell and molecular biology (2023)
Peter W Harrison, M Ridwan Amode, Olanrewaju Austine-Orimoloye, Andrey G Azov, Matthieu Barba, If Barnes, Arne Becker, Ruth Bennett, Andrew Berry, Jyothish Bhai, Simarpreet Kaur Bhurji, Sanjay Boddu, Paulo R Branco Lins, Lucy Brooks, Shashank Budhanuru Ramaraju, Lahcen I Campbell, Manuel Carbajo Martinez, Mehrnaz Charkhchi, Kapeel Chougule, Alexander Cockburn, Claire Davidson, Nishadi H De Silva, Kamalkumar Dodiya, Sarah Donaldson, Bilal El Houdaigui, Tamara El Naboulsi, Reham Fatima, Carlos Garcıa Giron, Thiago Genez, Dionysios Grigoriadis, Gurpreet S Ghattaoraya, Jose Gonzalez Martinez, Tatiana A Gurbich, Matthew Hardy, Zoe Hollis, Thibaut Hourlier, Toby Hunt, Mike Kay, Vinay Kaykala, Tuan Le, Diana Lemos, Disha Lodha, Diego Marques-Coelho, Gareth Maslen, Gabriela Alejandra Merino, Louisse Paola Mirabueno, Aleena Mushtaq, Syed Nakib Hossain, Denye N Ogeh, Manoj Pandian Sakthivel, Anne Parker, Malcolm Perry, Ivana Piližota, Daniel Poppleton, Irina Prosovetskaia, Shriya Raj, José G Pérez-Silva, Ahamed Imran Abdul Salam, Shradha Saraf, Nuno Saraiva-Agostinho, Dan Sheppard, Swati Sinha, Botond Sipos, Vasily Sitnik, William Stark, Emily Steed, Marie-Marthe Suner, Likhitha Surapaneni, Kyösti Sutinen, Francesca Floriana Tricomi, David Urbina-Gómez, Andres Veidenberg, Thomas A Walsh, Doreen H Ware, Elizabeth Wass, Natalie L Willhoft, Jamie Allen, Jorge Alvarez-Jarreta, Marc Chakiachvili, Bethany Flint, Stefano Giorgetti, Leanne Haggerty, Garth R Ilsley, Jon Keatley, Jane E Loveland, Benjamin Moore, Jonathan M Mudge, Guy Naamati, John Tate, Stephen J Trevanion, Andrea Winterbottom, Adam Frankish, Sarah E Hunt, Fiona Cunningham, Sarah Dyer, Robert D Finn, Fergal J Martin, Andrew D Yates
Ensembl 2024. Nucleic acids research (2023)
Amandine Velt, Bianca Frommer, Sophie Blanc, Daniela Holtgräwe, Éric Duchêne, Vincent Dumas, Jérôme Grimplet, Philippe Hugueney, Catherine Kim, Marie Lahaye, José Tomás Matus, David Navarro-Payá, Luis Orduña, Marcela Karey Tello-Ruiz, Nicola Vitulo, Doreen H Ware, Camille Rustenholz
An improved reference of the grapevine genome reasserts the origin of the PN40024 highly-homozygous genotype. G3 (Bethesda, Md.) (2023)
Nicholas Gladman, Barbara Hufnagel, Michael Regulski, Zhigang Liu, Xiaofei Wang, Kapeel Chougule, Leon V Kochian, Jurandir V Magalhaes, Doreen H Ware
Sorghum root epigenetic landscape during limiting phosphorus conditions. Plant direct 6 (5) (2022)
Noah Fahlgren, Muskan Kapoor, Galabina Yordanova, Irene Papatheodorou, Jamie Waese, Benjamin J Cole, Peter Harrison, Doreen H Ware, Timothy Tickle, Benedict Paten, Tony Burdett, Christine G Elsik, Christopher K Tuggle, Nicholas J Provart
Toward a Data Infrastructure for the Plant Cell Atlas. Plant physiology (2022)
Nicholas Gladman, Andrew Olson, Sharon Wei, Kapeel Chougule, Zhenyuan Lu, Marcela Tello-Ruiz, Ivar Meijs, Peter Van Buren, Yinping Jiao, Bo Wang, Vivek Kumar, Sunita Kumari, Lifang Zhang, John Burke, Junping Chen, Gloria Burow, Chad Hayes, Yves Emendack, Zhanguo Xin, Doreen H Ware
SorghumBase: a web-based portal for sorghum genetic information and community advancement. Planta 255 (2) (2022)
Young Koung Lee, Sunita Kumari, Andrew Olson, Felix Hauser, Doreen H Ware
Role of a ZF-HD Transcription Factor in miR157-Mediated Feed-Forward Regulatory Module That Determines Plant Architecture in Arabidopsis . International journal of molecular sciences 23 (15) (2022)
Matthew B Hufford, Arun S Seetharam, Margaret R Woodhouse, Kapeel M Chougule, Shujun Ou, Jianing Liu, William A Ricci, Tingting Guo, Andrew Olson, Yinjie Qiu, Rafael Della Coletta, Silas B Tittes, Asher I Hudson, Alexandre P Marand, Sharon Wei, Zhenyuan Lu, Bo Wang, Marcela Karey Tello-Ruiz, Rebecca D Piri, Na Wang, Dong Won Kim, Yibing Zeng, Christine H O'Connor, Xianran Li, Amanda M Gilbert, Erin L Baggs, Ksenia V Krasileva, John L Portwood, Ethalinda K S Cannon, Carson M Andorf, Nancy Manchanda, Samantha J Snodgrass, David E Hufnagel, Qiuhan Jiang, Sarah Pedersen, Michael L Syring, David A Kudrna, Victor Llaca, Kevin Fengler, Robert J Schmitz, Jeffrey Ross-Ibarra, Jianming Yu, Jonathan I Gent, Candice N Hirsch, Doreen H Ware, R Kelly Dawe
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes. Science (New York, N.Y.) 373 (6555) (2021)
Justin N Vaughn, Walid Korani, Joshua C Stein, Jeremy D Edwards, Daniel G Peterson, Sheron A Simpson, Ramey C Youngblood, Jane Grimwood, Kapeel Chougule, Doreen H Ware, Anna M McClung, Brian E Scheffler
Gene disruption by structural mutations drives selection in US rice breeding over the last century. PLoS genetics 17 (3) (2021)
Shujun Ou, Jianing Liu, Kapeel M Chougule, Arkarachai Fungtammasan, Arun S Seetharam, Joshua C Stein, Victor Llaca, Nancy Manchanda, Amanda M Gilbert, Sharon Wei, Chen-Shan Chin, David E Hufnagel, Sarah Pedersen, Samantha J Snodgrass, Kevin Fengler, Margaret R Woodhouse, Brian P Walenz, Sergey Koren, Adam M Phillippy, Brett T Hannigan, R Kelly Dawe, Candice N Hirsch, Matthew B Hufford, Doreen H Ware
Effect of sequence depth and length in long-read assembly of the maize inbred NC358. Nature communications 11 (1) (2020)
Cheng Zou, Avinash Karn, Bruce I Reisch, Allen Nguyen, Yongming Sun, Yun Bao, Michael S Campbell, Deanna M Church, Stephen Williams, Xia Xu, Craig A Ledbetter, Sagar Patel, Anne Y Fennell, Jeffrey C Glaubitz, Matthew Clark, Doreen H Ware, Jason P Londo, Qi Sun, Lance E Cadle-Davidson
Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus. Nature communications 11 (1) (2020)
Bo Wang, Elizabeth Tseng, Primo Baybayan, Kevin Eng, Michael Regulski, Yinping Jiao, Liya Wang, Andrew Olson, Kapeel Chougule, Peter Van Buren, Doreen H Ware
Variant phasing and haplotypic expression from long-read sequencing in maize. Communications biology 3 (1) (2020)
Ting Hon, Kristin Mars, Greg Young, Yu-Chih Tsai, Joseph W Karalius, Jane M Landolin, Nicholas Maurer, David Kudrna, Michael A Hardigan, Cynthia C Steiner, Steven J Knapp, Doreen H Ware, Joshua D Kapp, Paul Peluso, David R Rank
Highly accurate long-read HiFi sequencing data for five complex genomes. Scientific data 7 (1) (2020)
Augusto Lima Diniz, Danielle Izilda Rodrigues da Silva, Carolina Gimiliani Lembke, Maximiller Dal-Bianco Lamas Costa, Felipe Ten-Caten, Forrest Li, Romel Duarte Vilela, Marcelo Menossi, Doreen H Ware, Lauricio Endres, Glaucia Mendes Souza
Amino Acid and Carbohydrate Metabolism Are Coordinated to Maintain Energetic Balance during Drought in Sugarcane. International journal of molecular sciences 21 (23) (2020)
Nicholas Gladman, Yinping Jiao, Young Koung Lee, Lifang Zhang, Ratan Chopra, Michael Regulski, Gloria Burow, Chad Hayes, Shawn A Christensen, Lavanya Dampanaboina, Junping Chen, John Burke, Doreen H Ware, Zhanguo Xin
Fertility of Pedicellate Spikelets in Sorghum Is Controlled by a Jasmonic Acid Regulatory Module. International journal of molecular sciences 20 (19) (2019)
Lavanya Dampanaboina, Yinping Jiao, Junping Chen, Nicholas Gladman, Ratan Chopra, Gloria Burow, Chad Hayes, Shawn A Christensen, John Burke, Doreen H Ware, Zhanguo Xin
Sorghum MSD3 Encodes an ω-3 Fatty Acid Desaturase that Increases Grain Number by Reducing Jasmonic Acid Levels. International journal of molecular sciences 20 (21) (2019)
Silong Sun, Yingsi Zhou, Jian Chen, Junpeng Shi, Haiming Zhao, Hainan Zhao, Weibin Song, Mei Zhang, Yang Cui, Xiaomei Dong, Han Liu, Xuxu Ma, Yinping Jiao, Bo Wang, Xuehong Wei, Joshua C Stein, Jeff C Glaubitz, Fei Lu, Guoliang Yu, Chengzhi Liang, Kevin Fengler, Bailin Li, Antoni Rafalski, Patrick S Schnable, Doreen H Ware, Edward S Buckler, Jinsheng Lai
Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes. Nature genetics 50 (9) (2018)
Adam Paul Arkin, Robert W Cottingham, Christopher S Henry, Nomi L Harris, Rick L Stevens, Sergei Maslov, Paramvir Dehal, Doreen H Ware, Fernando Pérez, Shane Canon, Michael W Sneddon, Matthew L Henderson, William J Riehl, Dan Murphy-Olson, Stephen Y Chan, Roy T Kamimura, Sunita Kumari, Meghan M Drake, Thomas S Brettin, Elizabeth M Glass, Dylan Chivian, Dan Gunter, David J Weston, Benjamin H Allen, Jason Baumohl, Aaron A Best, Ben Bowen, Steven E Brenner, Christopher C Bun, John-Marc Chandonia, Jer-Ming Chia, Ric Colasanti, Neal Conrad, James J Davis, Brian H Davison, Matthew DeJongh, Scott Devoid, Emily Dietrich, Inna Dubchak, Janaka N Edirisinghe, Gang Fang, José P Faria, Paul M Frybarger, Wolfgang Gerlach, Mark B Gerstein, Annette Greiner, James Gurtowski, Holly L Haun, Fei He, Rashmi Jain, Marcin P Joachimiak, Kevin P Keegan, Shinnosuke Kondo, Vivek Kumar, Miriam L Land, Folker Meyer, Marissa Mills, Pavel S Novichkov, Taeyun Oh, Gary J Olsen, Robert Olson, Bruce Parrello, Shiran Pasternak, Erik Pearson, Sarah S Poon, Gavin A Price, Srividya Ramakrishnan, Priya Ranjan, Pamela C Ronald, Michael C Schatz, Samuel M D Seaver, Maulik Shukla, Roman A Sutormin, Mustafa H Syed, James Thomason, Nathan L Tintle, Daifeng Wang, Fangfang Xia, Hyunseung Yoo, Shinjae Yoo, Dantong Yu
KBase: The United States Department of Energy Systems Biology Knowledgebase. Nature biotechnology 36 (7) (2018)
Nathan M Springer, Sarah N Anderson, Carson M Andorf, Kevin R Ahern, Fang Bai, Omer Barad, W Brad Barbazuk, Hank W Bass, Kobi Baruch, Gil Ben-Zvi, Edward S Buckler, Robert Bukowski, Michael S Campbell, Ethalinda K S Cannon, Paul Chomet, R Kelly Dawe, Ruth Davenport, Hugo K Dooner, Limei He Du, Chunguang Du, Katherine A Easterling, Christine Gault, Jiahn-Chou Guan, Charles T Hunter, Georg Jander, Yinping Jiao, Karen E Koch, Guy Kol, Tobias G K Llner, Toru Kudo, Qing Li, Fei Lu, Dustin Mayfield-Jones, Wenbin Mei, Donald R McCarty, Jaclyn M Noshay, John L Portwood, Gil Ronen, A Mark Settles, Doron Shem-Tov, Jinghua Shi, Ilya Soifer, Joshua C Stein, Michelle C Stitzer, Masaharu Suzuki, Daniel L Vera, Erik Vollbrecht, Julia T Vrebalov, Doreen H Ware, Sharon Wei, Kokulapalan Wimalanathan, Margaret R Woodhouse, Wenwei Xiong, Thomas P Brutnell
The maize W22 genome provides a foundation for functional genomics and transposon biology. Nature genetics 50 (9) (2018)
Joshua C Stein, Yeisoo Yu, Dario Copetti, Derrick J Zwickl, Li Zhang, Chengjun Zhang, Kapeel Chougule, Dongying Gao, Aiko Iwata, Jose Luis Goicoechea, Sharon Wei, Jun Wang, Yi Liao, Muhua Wang, Julie Jacquemin, Claude Becker, Dave Kudrna, Jianwei Zhang, Carlos E M Londono, Xiang Song, Seunghee Lee, Paul Sanchez, Andrea Zuccolo, Jetty S S Ammiraju, Jayson Talag, Ann Danowitz, Luis F Rivera, Andrea R Gschwend, Christos Noutsos, Cheng-Chieh Wu, Shu-Min Kao, Jhih-Wun Zeng, Fu-Jin Wei, Qiang Zhao, Qi Feng, Moaine El Baidouri, Marie-Christine Carpentier, Eric Lasserre, Richard Cooke, Daniel da Rosa Farias, Luciano Carlos da Maia, Railson S Dos Santos, Kevin G Nyberg, Kenneth L McNally, Ramil Mauleon, Nickolai Alexandrov, Jeremy Schmutz, Dave Flowers, Chuanzhu Fan, Detlef Weigel, Kshirod K Jena, Thomas Wicker, Mingsheng Chen, Bin Han, Robert James Henry, Yue-Ie C Hsing, Nori Kurata, Antonio Costa de Oliveira, Olivier Panaud, Scott A Jackson, Carlos A Machado, Michael J Sanderson, Manyuan Long, Doreen H Ware, Rod A Wing
Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature genetics 50 (2) (2018)
Yinping Jiao, Young Koung Lee, Nicholas Gladman, Ratan Chopra, Shawn A Christensen, Michael Regulski, Gloria Burow, Chad Hayes, John Burke, Doreen H Ware, Zhanguo Xin
MSD1 regulates pedicellate spikelet fertility in sorghum through the jasmonic acid pathway. Nature communications 9 (1) (2018)
Kameron T Wittmeyer, Jin Cui, Debamalya Chatterjee, Tzuu-Fen Lee, Qixian Tan, Weiya Xue, Yinping Jiao, Po-Hao Wang, Iffa Gaffoor, Doreen H Ware, Blake C Meyers, Surinder Chopra
The Dominant and Poorly Penetrant Phenotypes of Maize Unstable factor for orange1 Are Caused by DNA Methylation Changes at a Linked Transposon. The Plant cell 30 (12) (2018)
Yinping Jiao, John Burke, Ratan Chopra, Gloria Burow, Junping Chen, Bo Wang, Chad Hayes, Yves Emendack, Doreen H Ware, Zhanguo Xin
A Sorghum Mutant Resource as an Efficient Platform for Gene Discovery in Grasses. The Plant cell 28 (7) (2016)

Doreen H Ware.css-eqlu8i{font-size:small;padding-left:4px;} (Doreen Ware)

Publication Activity (10 Years)

Top Topics

Top Venues

Doreen H Ware (Doreen Ware)