Andrew W McPherson (Andrew McPherson)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 27

Top Venues

bioRxiv : the preprint server for biology

Nature communications

Nature genetics

Nature methods

Sloan Kettering Institute

Simon Fraser University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Sloan Kettering Institute Oct 17 2018

United States

Assistant Attending :: Sohrab shah research

Education History

Simon Fraser University Sep 01 2008 - Jul 27 2015

Canada

PHD :: School of Computing Science

Simon Fraser University Aug 01 1996 - Sep 16 2002

Canada

BSC :: School of Engineering Science

Publications

Khanh Ngoc Dinh, Ignacio Vàzquez-García, Andrew Chan, Rhea Malhotra, Adam C Weiner, Andrew W McPherson, Simon Tavare
CINner: modeling and simulation of chromosomal instability in cancer at single-cell resolution. bioRxiv : the preprint server for biology (2024)
Hongyu Shi, Marc J Williams, Gryte Satas, Adam C Weiner, Andrew W McPherson, Sohrab P Shah
Allele-specific transcriptional effects of subclonal copy number alterations enable genotype-phenotype mapping in cancer cells. Nature communications 15 (1) (2024)
Khanh Ngoc Dinh, Ignacio Vàzquez-García, Andrew Chan, Rhea Malhotra, Adam C Weiner, Andrew W McPherson, Simon Tavare
CINner: modeling and simulation of chromosomal instability in cancer at single-cell resolution. bioRxiv : the preprint server for biology (2024)
Khanh Ngoc Dinh, Ignacio Vàzquez-García, Andrew Chan, Rhea Malhotra, Adam C Weiner, Andrew W McPherson, Simon Tavare
CINner: modeling and simulation of chromosomal instability in cancer at single-cell resolution. bioRxiv : the preprint server for biology (2024)
Khanh Ngoc Dinh, Ignacio Vàzquez-García, Andrew Chan, Rhea Malhotra, Adam C Weiner, Andrew W McPherson, Simon Tavare
CINner: modeling and simulation of chromosomal instability in cancer at single-cell resolution. bioRxiv : the preprint server for biology (2024)
Hongyu Shi, Marc J Williams, Gryte Satas, Adam C Weiner, Andrew W McPherson, Sohrab P Shah
Allele-specific transcriptional effects of subclonal copy number alterations enable genotype-phenotype mapping in cancer cells. Nature communications 15 (1) (2024)
Hongyu Shi, Marc J Williams, Gryte Satas, Adam C Weiner, Andrew W McPherson, Sohrab P Shah
Allele-specific transcriptional effects of subclonal copy number alterations enable genotype-phenotype mapping in cancer cells. Nature communications 15 (1) (2024)
Andrew W McPherson, Ignacio Vàzquez-García, Matthew A Myers, Matthew Zatzman, Duaa Al-Rawi, Adam Weiner, Samuel Freeman, Neeman Mohibullah, Gryte Satas, Marc J Williams, Nicholas Ceglia, Allen W Zhang, Jun Li, Jamie L P Lim, Michelle Wu, Seongmin Choi, Eliyahu Havasov, Diljot Grewal, Hongyu Shi, Minsoo Kim, Roland F Schwarz, Tom Kaufmann, Khanh Ngoc Dinh, Florian Uhlitz, Julie Tran, Yushi Wu, Ruchi Patel, Satish Ramakrishnan, DooA Kim, Justin Clarke, Hunter Green, Emily Ali, Melody DiBona, Nancy Varice, Ritika Kundra, Vance Broach, Ginger J Gardner, Kara Long Roche, Yukio Sonoda, Oliver Zivanovic, Sarah H Kim, Rachel N Grisham, Ying L Liu, Agnes Viale, Nicole Rusk, Yulia Lakhman, Lora H Ellenson, Simon Tavaré, Samuel Aparicio, Dennis S Chi, Carol Aghajanian, Nadeem R Abu-Rustum, Claire F Friedman, Dmitriy Zamarin, Britta Weigelt, Samuel F Bakhoum, Sohrab P Shah
Ongoing genome doubling promotes evolvability and immune dysregulation in ovarian cancer. bioRxiv : the preprint server for biology (2024)
Laksshman Sundaram, Arvind Kumar, Matthew Zatzman, Adriana Salcedo, Neal G Ravindra, Shadi Shams, Brian H Louie, S Tansu Bagdatli, Matthew A Myers, Shahab Sarmashghi, Hyo Young Choi, Won-Young Choi, Kathryn E Yost, Yanding Zhao, Jeffrey M Granja, Toshinori Hinoue, David Neil Hayes, Andrew D Cherniak, Ina Felau, Hani Choudhry, Jean Claude Zenklusen, Kyle Kai-How Farh, Andrew W McPherson, Christina Curtis, Peter W Laird, null null, M Ryan Corces, Howard Y Chang, William J Greenleaf, John A Demchok, Liming Yang, Roy Tarnuzzer, Samantha J Caesar-Johnson, Zhining Wang, Ashley S Doane, Ekta Khurana, Mauro A A Castro, Alexander J Lazar, Bradley M Broom, John N Weinstein, Rehan Akbani, Shwetha V Kumar, Benjamin J Raphael, Christopher K Wong, Joshua M Stuart, Rojin Safavi, Christopher C Benz, Benjamin K Johnson, Cindy Kyi, Hui Shen
Single-cell chromatin accessibility reveals malignant regulatory programs in primary human cancers. Science (New York, N.Y.) 385 (6713) (2024)
Hongyu Shi, Marc J Williams, Gryte Satas, Adam C Weiner, Andrew W McPherson, Sohrab P Shah
Allele-specific transcriptional effects of subclonal copy number alterations enable genotype-phenotype mapping in cancer cells. Nature communications 15 (1) (2024)
Hongyu Shi, Marc J Williams, Gryte Satas, Adam C Weiner, Andrew W McPherson, Sohrab P Shah
Allele-specific transcriptional effects of subclonal copy number alterations enable genotype-phenotype mapping in cancer cells. Nature communications 15 (1) (2024)
Hongyu Shi, Marc J Williams, Gryte Satas, Adam C Weiner, Andrew W McPherson, Sohrab P Shah
Allele-specific transcriptional effects of subclonal copy number alterations enable genotype-phenotype mapping in cancer cells. Nature communications 15 (1) (2024)
Benjamin T Diamond, Bachisio Ziccheddu, Kylee H Maclachlan, Justin Taylor, Eileen Mary Boyle, Juan Esteban Arango Ossa, Thomas Jacob Jahn, Maurizio Affer, Tulasigeri M Totiger, David G Coffey, Namrata S Chandhok, Justin M Watts, Luisa Cimmino, Sydney X Lu, Niccolo' Bolli, Kelly L Bolton, Heather J Landau, Jae H Park, Karuna Ganesh, Andrew W McPherson, Mikkael A Sekeres, Alexander M Lesokhin, David J Chung, Yanming Zhang, Caleb Ho, Mikhail Roshal, Jeffrey W Tyner, Stephen D Nimer, Elli Papaemmanuil, Saad Z Usmani, Gareth J Morgan, Carl Ola Landgren, Francesco Maura
Tracking the Evolution of Therapy-Related Myeloid Neoplasms Using Chemotherapy Signatures. Blood (2023)
Adam C Weiner, Marc J Williams, Hongyu Shi, Sohrab P Shah, Andrew W McPherson
Modeling single cell DNA replication dynamics and aneuploidy in genomically unstable cancers. bioRxiv : the preprint server for biology (2023)
Hongyu Shi, Marc J Williams, Gryte Satas, Adam C Weiner, Andrew W McPherson, Sohrab P Shah
Exploiting allele-specific transcriptional effects of subclonal copy number alterations for genotype-phenotype mapping in cancer cell populations. bioRxiv : the preprint server for biology (2023)
Sanam Shahid, Nicholas Ceglia, Jean-Benoît Le Luduec, Andrew W McPherson, Barbara Spitzer, Theodota Kontopoulos, Viktoria Bojilova, M Kazim Panjwani, Mikhail Roshal, Sohrab P Shah, Omar I Abdel-Wahab, Benjamin D Greenbaum, Katharine C Hsu
Immune Escape after Allogeneic Hematopoietic Cell Transplantation in Pediatric Acute Myeloid Leukemia. Blood advances (2023)
Adam C Weiner, Marc J Williams, Hongyu Shi, Sohrab P Shah, Andrew W McPherson
Modeling single cell DNA replication dynamics and aneuploidy in genomically unstable cancers. bioRxiv : the preprint server for biology (2023)
Hongyu Shi, Marc J Williams, Gryte Satas, Adam C Weiner, Andrew W McPherson, Sohrab P Shah
Exploiting allele-specific transcriptional effects of subclonal copy number alterations for genotype-phenotype mapping in cancer cell populations. bioRxiv : the preprint server for biology (2023)
Benjamin T Diamond, Bachisio Ziccheddu, Kylee H Maclachlan, Justin Taylor, Eileen Mary Boyle, Juan Esteban Arango Ossa, Thomas Jacob Jahn, Maurizio Affer, Tulasigeri M Totiger, David G Coffey, Namrata S Chandhok, Justin M Watts, Luisa Cimmino, Sydney X Lu, Niccolo' Bolli, Kelly L Bolton, Heather J Landau, Jae H Park, Karuna Ganesh, Andrew W McPherson, Mikkael A Sekeres, Alexander M Lesokhin, David J Chung, Yanming Zhang, Caleb Ho, Mikhail Roshal, Jeffrey W Tyner, Stephen D Nimer, Elli Papaemmanuil, Saad Z Usmani, Gareth J Morgan, Carl Ola Landgren, Francesco Maura
Tracking the Evolution of Therapy-Related Myeloid Neoplasms Using Chemotherapy Signatures. Blood (2023)
Adam C Weiner, Marc J Williams, Hongyu Shi, Sohrab P Shah, Andrew W McPherson
Modeling single cell DNA replication dynamics and aneuploidy in genomically unstable cancers. bioRxiv : the preprint server for biology (2023)
Adam C Weiner, Marc J Williams, Hongyu Shi, Sohrab P Shah, Andrew W McPherson
Modeling single cell DNA replication dynamics and aneuploidy in genomically unstable cancers. bioRxiv : the preprint server for biology (2023)
Maia A Smith, Cydney B Nielsen, Fong Chun Chan, Andrew W McPherson, Andrew Roth, Hossein Farahani, Daniel Machev, Adi Steif, Sohrab P Shah
E-scape: interactive visualization of single-cell phylogenetics and cancer evolution. Nature methods 14 (6) (2019)
Yi Kan Wang, Ali Bashashati, Michael S Anglesio, Dawn R Cochrane, Diljot S Grewal, Gavin Ha, Andrew W McPherson, Hugo Mark Horlings, Janine Senz, Leah M Prentice, Anthony N Karnezis, Daniel Lai, Mohamed R Aniba, Allen W Zhang, Karey Shumansky, Celia Siu, Adrian Wan, Melissa K McConechy, Hector Li-Chang, Alicia Tone, Diane Provencher, Manon de Ladurantaye, Hubert Fleury, Aikou Okamoto, Satoshi Yanagida, Nozomu Yanaihara, Misato Saito, Andrew J Mungall, Richard Moore, Marco A Marra, C Blake Gilks, Anne-Marie Mes-Masson, Jessica N McAlpine, Samuel A J R Aparicio, David G Huntsman, Sohrab P Shah
Genomic consequences of aberrant DNA repair mechanisms stratify ovarian cancer histotypes. Nature genetics 49 (6) (2017)
Andrew W McPherson, Andrew Roth, Gavin Ha, Cedric Chauve, Adi Steif, Camila P E de Souza, Peter Eirew, Alexandre Bouchard-Côté, Sam Aparicio, S Cenk Sahinalp, Sohrab P Shah
ReMixT: clone-specific genomic structure estimation in cancer. Genome biology 18 (1) (2017)
Andrew W McPherson, Andrew Roth, Emma Laks, Tehmina Masud, Ali Bashashati, Allen W Zhang, Gavin Ha, Justina Biele, Damian Yap, Adrian Wan, Leah M Prentice, Jaswinder Khattra, Maia A Smith, Cydney B Nielsen, Sarah C Mullaly, Steve Kalloger, Anthony Karnezis, Karey Shumansky, Celia Siu, Jamie Rosner, Hector Li Chan, Julie Ho, Nataliya Melnyk, Janine Senz, Winnie Yang, Richard Moore, Andrew J Mungall, Marco A Marra, Alexandre Bouchard-Côté, C Blake Gilks, David G Huntsman, Jessica N McAlpine, Samuel Aparicio, Sohrab P Shah
Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer. Nature genetics 48 (7) (2016)
Robert Kridel, Fong Chun Chan, Anja Mottok, Merrill Boyle, Pedro Farinha, King Tan, Barbara Meissner, Ali Bashashati, Andrew W McPherson, Andrew Roth, Karey Shumansky, Damian Yap, Susana Ben-Neriah, Jamie Rosner, Maia A Smith, Cydney Nielsen, Eva Giné, Adele Telenius, Daisuke Ennishi, Andrew J Mungall, Richard Moore, Ryan D Morin, Nathalie A Johnson, Laurie H Sehn, Thomas Tousseyn, Ahmet Dogan, Joseph M Connors, David W Scott, Christian Steidl, Marco A Marra, Randy D Gascoyne, Sohrab P Shah
Histological Transformation and Progression in Follicular Lymphoma: A Clonal Evolution Study. PLoS medicine 13 (12) (2016)
Andrew Roth, Andrew W McPherson, Emma Laks, Justina Biele, Damian Yap, Adrian Wan, Maia A Smith, Cydney B Nielsen, Jessica N McAlpine, Samuel Aparicio, Alexandre Bouchard-Côté, Sohrab P Shah
Clonal genotype and population structure inference from single-cell tumor sequencing. Nature methods 13 (7) (2016)
Paul C Boutros, Michael Fraser, Nicholas J Harding, Richard J de Borja, Dominique Trudel, Emilie Lalonde, Alice Meng, Pablo H Hennings-Yeomans, Andrew W McPherson, Veronica Y Sabelnykova, Amin Zia, Natalie S Fox, Julie Livingstone, Yu-Jia Shiah, Jianxin Wang, Timothy A Beck, Cherry L Have, Taryne Chong, Michelle Sam, Jeremy Johns, Lee Timms, Nicholas Buchner, Ada Wong, John D Watson, Trent T Simmons, Christine P'ng, Gaetano Zafarana, Francis Nguyen, Xuemei Luo, Kenneth C Chu, Stephenie D Prokopec, Jenna Sykes, Alan Dal Pra, Alejandro Berlin, Andrew Brown, Michelle A Chan-Seng-Yue, Fouad Yousif, Robert E Denroche, Lauren C Chong, Gregory M Chen, Esther Jung, Clement Fung, Maud H W Starmans, Hanbo Chen, Shaylan K Govind, James Hawley, Alister D'Costa, Melania Pintilie, Daryl Waggott, Faraz Hach, Philippe Lambin, Lakshmi B Muthuswamy, Colin Cooper, Rosalind Eeles, David Neal, Bernard Tetu, Cenk Sahinalp, Lincoln D Stein, Neil Fleshner, Sohrab P Shah, Colin C Collins, Thomas J Hudson, John D McPherson, Theodorus van der Kwast, Robert G Bristow
Spatial genomic heterogeneity within localized, multifocal prostate cancer. Nature genetics 47 (7) (2015)

Andrew W McPherson.css-eqlu8i{font-size:small;padding-left:4px;} (Andrew McPherson)

Publication Activity (10 Years)

Top Topics

Top Venues

Andrew W McPherson (Andrew McPherson)