Antton Alberdi

Scopus Author ID Ciência ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 23

Top Venues

Scientific data

Molecular ecology

Microbiology spectrum

ISME communications

University of Copenhagen

University of the Basque Country (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Copenhagen Jan 01 2020

Denmark

Associate Professor :: GLOBE Institute

University of Copenhagen Jul 01 2019

Denmark

Assistant Professor :: The GLOBE Institute

University of Copenhagen Jan 01 2018 - Jun 30 2019

Denmark

Assistant Professor :: Natural History Museum of Denmark

University of Copenhagen Jan 01 2016 - Dec 31 2017

Denmark

Postdoctoral Researcher :: Natural History Museum of Denmark

University of the Basque Country Feb 01 2015 - Dec 31 2015

Spain

Researcher :: Zoology and Animal Cell Biology

Education History

University of the Basque Country Jan 01 2011 - Dec 05 2014

Spain

PHD :: Zoology and Animal Cell Biology

University of the Basque Country Oct 01 2010 - Oct 01 2011

Spain

MSC :: Zoology and Animal Cell Biology

Publications

Raphael Eisenhofer, Joseph Nesme, Luisa Santos-Bay, Adam Koziol, Søren Johannes Sørensen, Antton Alberdi, Ostaizka Aizpurua
A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics. Microbiology spectrum (2024)
Mauricio Hernández, Sergio Ancona, Stephanie E Hereira-Pacheco, Aníbal H Díaz de la Vega-Pérez, Antton Alberdi, Yendi E Navarro-Noya
Seasonal dietary changes relate to gut microbiota composition depending on the host species but do not correlate with gut microbiota diversity in arthropod-eating lizards. Molecular ecology (2024)
Raphael Eisenhofer, Joseph Nesme, Luisa Santos-Bay, Adam Koziol, Søren Johannes Sørensen, Antton Alberdi, Ostaizka Aizpurua
A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics. Microbiology spectrum 12 (4) (2024)
Mauricio Hernández, Sergio Ancona, Stephanie E Hereira-Pacheco, Aníbal H Díaz de la Vega-Pérez, Antton Alberdi, Yendi E Navarro-Noya
Seasonal dietary changes relate to gut microbiota composition depending on the host species but do not correlate with gut microbiota diversity in arthropod-eating lizards. Molecular ecology 33 (14) (2024)
Raphael Eisenhofer, Joseph Nesme, Luisa Santos-Bay, Adam Koziol, Søren Johannes Sørensen, Antton Alberdi, Ostaizka Aizpurua
A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics. Microbiology spectrum 12 (4) (2024)
Raphael Eisenhofer, Joseph Nesme, Luisa Santos-Bay, Adam Koziol, Søren Johannes Sørensen, Antton Alberdi, Ostaizka Aizpurua
A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics. Microbiology spectrum 12 (4) (2024)
Jérémy S P Froidevaux, Nia Toshkova, Luc Barbaro, Ana Benítez-López, Christian Kerbiriou, Isabelle Le Viol, Michela Pacifici, Luca Santini, Clare Stawski, Danilo Russo, Jasja Dekker, Antton Alberdi, Francisco Amorim, Leonardo Ancillotto, Kévin Barré, Yves Bas, Lisette Cantú-Salazar, Dina K N Dechmann, Tiphaine Devaux, Katrine Eldegard, Sasan Fereidouni, Joanna Furmankiewicz, Daniela Hamidović, Davina L Hill, Carlos F Ibáñez, Jean-François Julien, Javier Juste, Peter Kaňuch, Carmi Korine, Alexis Laforge, Gaëlle Legras, Camille Leroux, Grzegorz Lesiński, Léa Mariton, Julie Marmet, Vanessa A Mata, Clare M Mifsud, Victoria Nistreanu, Roberto Novella-Fernandez, Hugo Rebelo, Niamh Roche, Charlotte Roemer, Ireneusz Ruczyński, Rune Sørås, Marcel Uhrin, Adriana Vella, Christian C Voigt, Orly Razgour
A species-level trait dataset of bats in Europe and beyond. Scientific data 10 (1) (2023)
Jérémy S P Froidevaux, Nia Toshkova, Luc Barbaro, Ana Benítez-López, Christian Kerbiriou, Isabelle Le Viol, Michela Pacifici, Luca Santini, Clare Stawski, Danilo Russo, Jasja Dekker, Antton Alberdi, Francisco Amorim, Leonardo Ancillotto, Kévin Barré, Yves Bas, Lisette Cantú-Salazar, Dina K N Dechmann, Tiphaine Devaux, Katrine Eldegard, Sasan Fereidouni, Joanna Furmankiewicz, Daniela Hamidović, Davina L Hill, Carlos F Ibáñez, Jean-François Julien, Javier Juste, Peter Kaňuch, Carmi Korine, Alexis Laforge, Gaëlle Legras, Camille Leroux, Grzegorz Lesiński, Léa Mariton, Julie Marmet, Vanessa A Mata, Clare M Mifsud, Victoria Nistreanu, Roberto Novella-Fernandez, Hugo Rebelo, Niamh Roche, Charlotte Roemer, Ireneusz Ruczyński, Rune Sørås, Marcel Uhrin, Adriana Vella, Christian C Voigt, Orly Razgour
A species-level trait dataset of bats in Europe and beyond. Scientific data 10 (1) (2023)
Raphael Eisenhofer, Iñaki Odriozola, Antton Alberdi
Impact of microbial genome completeness on metagenomic functional inference. ISME communications 3 (1) (2023)
Raphael Eisenhofer, Iñaki Odriozola, Antton Alberdi
Impact of microbial genome completeness on metagenomic functional inference. ISME communications 3 (1) (2023)
Jérémy S P Froidevaux, Nia Toshkova, Luc Barbaro, Ana Benítez-López, Christian Kerbiriou, Isabelle Le Viol, Michela Pacifici, Luca Santini, Clare Stawski, Danilo Russo, Jasja Dekker, Antton Alberdi, Francisco Amorim, Leonardo Ancillotto, Kévin Barré, Yves Bas, Lisette Cantú-Salazar, Dina K N Dechmann, Tiphaine Devaux, Katrine Eldegard, Sasan Fereidouni, Joanna Furmankiewicz, Daniela Hamidović, Davina L Hill, Carlos F Ibáñez, Jean-François Julien, Javier Juste, Peter Kaňuch, Carmi Korine, Alexis Laforge, Gaëlle Legras, Camille Leroux, Grzegorz Lesiński, Léa Mariton, Julie Marmet, Vanessa A Mata, Clare M Mifsud, Victoria Nistreanu, Roberto Novella-Fernandez, Hugo Rebelo, Niamh Roche, Charlotte Roemer, Ireneusz Ruczyński, Rune Sørås, Marcel Uhrin, Adriana Vella, Christian C Voigt, Orly Razgour
A species-level trait dataset of bats in Europe and beyond. Scientific data 10 (1) (2023)
Raphael Eisenhofer, Iñaki Odriozola, Antton Alberdi
Impact of microbial genome completeness on metagenomic functional inference. ISME communications 3 (1) (2023)
Jérémy S P Froidevaux, Nia Toshkova, Luc Barbaro, Ana Benítez-López, Christian Kerbiriou, Isabelle Le Viol, Michela Pacifici, Luca Santini, Clare Stawski, Danilo Russo, Jasja Dekker, Antton Alberdi, Francisco Amorim, Leonardo Ancillotto, Kévin Barré, Yves Bas, Lisette Cantú-Salazar, Dina K N Dechmann, Tiphaine Devaux, Katrine Eldegard, Sasan Fereidouni, Joanna Furmankiewicz, Daniela Hamidović, Davina L Hill, Carlos F Ibáñez, Jean-François Julien, Javier Juste, Peter Kaňuch, Carmi Korine, Alexis Laforge, Gaëlle Legras, Camille Leroux, Grzegorz Lesiński, Léa Mariton, Julie Marmet, Vanessa A Mata, Clare M Mifsud, Victoria Nistreanu, Roberto Novella-Fernandez, Hugo Rebelo, Niamh Roche, Charlotte Roemer, Ireneusz Ruczyński, Rune Sørås, Marcel Uhrin, Adriana Vella, Christian C Voigt, Orly Razgour
A species-level trait dataset of bats in Europe and beyond. Scientific data 10 (1) (2023)
Adam Koziol, Iñaki Odriozola, Aoife Leonard, Raphael Eisenhofer, Carlos San José, Ostaizka Aizpurua, Antton Alberdi
Mammals show distinct functional gut microbiome dynamics to identical series of environmental stressors. mBio (2023)
Jérémy S P Froidevaux, Nia Toshkova, Luc Barbaro, Ana Benítez-López, Christian Kerbiriou, Isabelle Le Viol, Michela Pacifici, Luca Santini, Clare Stawski, Danilo Russo, Jasja Dekker, Antton Alberdi, Francisco Amorim, Leonardo Ancillotto, Kévin Barré, Yves Bas, Lisette Cantú-Salazar, Dina K N Dechmann, Tiphaine Devaux, Katrine Eldegard, Sasan Fereidouni, Joanna Furmankiewicz, Daniela Hamidović, Davina L Hill, Carlos F Ibáñez, Jean-François Julien, Javier Juste, Peter Kaňuch, Carmi Korine, Alexis Laforge, Gaëlle Legras, Camille Leroux, Grzegorz Lesiński, Léa Mariton, Julie Marmet, Vanessa A Mata, Clare M Mifsud, Victoria Nistreanu, Roberto Novella-Fernandez, Hugo Rebelo, Niamh Roche, Charlotte Roemer, Ireneusz Ruczyński, Rune Sørås, Marcel Uhrin, Adriana Vella, Christian C Voigt, Orly Razgour
A species-level trait dataset of bats in Europe and beyond. Scientific data 10 (1) (2023)
Sofia Marcos, Melanie Parejo, Andone Estonba, Antton Alberdi
Recovering High-Quality Host Genomes from Gut Metagenomic Data through Genotype Imputation. Advanced genetics (Hoboken, N.J.) 3 (3) (2022)
Sofia Marcos, Melanie Parejo, Andone Estonba, Antton Alberdi
Recovering High-Quality Host Genomes from Gut Metagenomic Data through Genotype Imputation. Advanced genetics (Hoboken, N.J.) 3 (3) (2022)
Antton Alberdi, Sandra Breum Andersen, Morten Tønsberg Limborg, Robert R Dunn, Marcus Thomas Pius Gilbert
Disentangling host-microbiota complexity through hologenomics. Nature reviews. Genetics (2021)
Antton Alberdi, M Thomas P Gilbert
A guide to the application of Hill numbers to DNA-based diversity analyses. Molecular ecology resources 19 (4) (2019)
Antton Alberdi, Ostaizka Aizpurua, Kristine Bohmann, Shyam Gopalakrishnan, Christina Lynggaard, Martin Nielsen, Marcus Thomas Pius Gilbert
Promises and pitfalls of using high-throughput sequencing for diet analysis. Molecular ecology resources 19 (2) (2018)
Rebecca Hooper, Jaelle C Brealey, Tom van der Valk, Antton Alberdi, John W Durban, Holly Fearnbach, Kelly M Roberston, Robin W Baird, M Bradley Hanson, Paul Wade, M Thomas P Gilbert, Phillip A Morin, Jochen B W Wolf, Andrew D Foote, Katerina Guschanski
Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin. Molecular ecology 28 (2) (2018)
Ostaizka Aizpurua, Ivana Budinski, Panagiotis Georgiakakis, Shyam Gopalakrishnan, Carlos Ibañez, Vanessa Mata, Hugo Rebelo, Danilo Russo, Farkas Szodoray-Parádi, Violeta Zhelyazkova, Vida Zrncic, M Thomas P Gilbert, Antton Alberdi
Agriculture shapes the trophic niche of a bat preying on multiple pest arthropods across Europe: Evidence from DNA metabarcoding. Molecular ecology 27 (3) (2018)
Aitor Arrizabalaga-Escudero, Elizabeth L Clare, Egoitz Salsamendi, Antton Alberdi, Inazio Garin, Joxerra Aihartza, Urtzi Goiti
Assessing niche partitioning of co-occurring sibling bat species by DNA metabarcoding. Molecular ecology 27 (5) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Antton Alberdi