Søren Johannes Sørensen (Søren Sørensen, S J Sørensen, Sören J Sörensen, Søren J Sørensen)

ResearcherID Loop profile Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 77

Top Venues

Nature communications

Applied and environmental microbiology

The ISME journal

FEMS microbiology ecology

University of Copenhagen

University of Copenhagen (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Copenhagen Jan 01 2005

Denmark

Professor :: Department of Biology

Education History

University of Copenhagen Jul 01 1989 - Jul 01 1992

Denmark

PHD

Publications

Wanli He, Jakob Russel, Franziska Klincke, Joseph Nesme, Søren Johannes Sørensen
Insights into the ecology of the infant gut plasmidome. Nature communications 15 (1) (2024)
Raphael Eisenhofer, Joseph Nesme, Luisa Santos-Bay, Adam Koziol, Søren Johannes Sørensen, Antton Alberdi, Ostaizka Aizpurua
A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics. Microbiology spectrum (2024)
Jan Helge Behr, Theresa Kuhl-Nagel, Loreen Sommermann, Narges Moradtalab, Soumitra Paul Chowdhury, Michael Schloter, Saskia Windisch, Ingo Schellenberg, Lorrie Maccario, Søren Johannes Sørensen, Michael Rothballer, Joerg Geistlinger, Kornelia Smalla, Uwe Ludewig, Günter Neumann, Rita Grosch, Doreen Babin
Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant-microorganism feedback in the rhizosphere. FEMS microbiology ecology 100 (2) (2024)
Jan Helge Behr, Theresa Kuhl-Nagel, Loreen Sommermann, Narges Moradtalab, Soumitra Paul Chowdhury, Michael Schloter, Saskia Windisch, Ingo Schellenberg, Lorrie Maccario, Søren Johannes Sørensen, Michael Rothballer, Joerg Geistlinger, Kornelia Smalla, Uwe Ludewig, Günter Neumann, Rita Grosch, Doreen Babin
Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant-microorganism feedback in the rhizosphere. FEMS microbiology ecology 100 (2) (2024)
Jan Helge Behr, Theresa Kuhl-Nagel, Loreen Sommermann, Narges Moradtalab, Soumitra Paul Chowdhury, Michael Schloter, Saskia Windisch, Ingo Schellenberg, Lorrie Maccario, Søren Johannes Sørensen, Michael Rothballer, Joerg Geistlinger, Kornelia Smalla, Uwe Ludewig, Günter Neumann, Rita Grosch, Doreen Babin
Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant-microorganism feedback in the rhizosphere. FEMS microbiology ecology (2024)
Wanli He, Jakob Russel, Franziska Klincke, Joseph Nesme, Søren Johannes Sørensen
Insights into the ecology of the infant gut plasmidome. Nature communications 15 (1) (2024)
Jessica Lasky-Su, Jonathan Thorsen, Ann-Marie Malby Schoos, Morten Arendt Rasmussen, Sarah Brandt, Søren Johannes Sørensen, Nilo Vahman, Bo Lund Chawes, Klaus Bønnelykke
Infantile colic is associated with development of later constipation and atopic disorders. Allergy (2024)
Raphael Eisenhofer, Joseph Nesme, Luisa Santos-Bay, Adam Koziol, Søren Johannes Sørensen, Antton Alberdi, Ostaizka Aizpurua
A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics. Microbiology spectrum 12 (4) (2024)
Jan Helge Behr, Theresa Kuhl-Nagel, Loreen Sommermann, Narges Moradtalab, Soumitra Paul Chowdhury, Michael Schloter, Saskia Windisch, Ingo Schellenberg, Lorrie Maccario, Søren Johannes Sørensen, Michael Rothballer, Joerg Geistlinger, Kornelia Smalla, Uwe Ludewig, Günter Neumann, Rita Grosch, Doreen Babin
Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant-microorganism feedback in the rhizosphere. FEMS microbiology ecology 100 (2) (2024)
Trine Zachariasen, Jakob Russel, Charisse Petersen, Gisle Alberg Vestergaard, Shiraz A Shah, Pablo Atienza Lopez, Moschoula Passali, Stuart E Turvey, Søren Johannes Sørensen, Ole Lund, Jakob Stokholm, Asker Daniel Brejnrod, Jonathan Thorsen
MAGinator enables accurate profiling of de novo MAGs with strain-level phylogenies. Nature communications 15 (1) (2024)
Jan Helge Behr, Theresa Kuhl-Nagel, Loreen Sommermann, Narges Moradtalab, Soumitra Paul Chowdhury, Michael Schloter, Saskia Windisch, Ingo Schellenberg, Lorrie Maccario, Søren Johannes Sørensen, Michael Rothballer, Joerg Geistlinger, Kornelia Smalla, Uwe Ludewig, Günter Neumann, Rita Grosch, Doreen Babin
Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant-microorganism feedback in the rhizosphere. FEMS microbiology ecology 100 (2) (2024)
Raphael Eisenhofer, Joseph Nesme, Luisa Santos-Bay, Adam Koziol, Søren Johannes Sørensen, Antton Alberdi, Ostaizka Aizpurua
A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics. Microbiology spectrum 12 (4) (2024)
Wanli He, Jakob Russel, Franziska Klincke, Joseph Nesme, Søren Johannes Sørensen
Insights into the ecology of the infant gut plasmidome. Nature communications 15 (1) (2024)
Trine Zachariasen, Jakob Russel, Charisse Petersen, Gisle Alberg Vestergaard, Shiraz A Shah, Pablo Atienza Lopez, Moschoula Passali, Stuart E Turvey, Søren Johannes Sørensen, Ole Lund, Jakob Stokholm, Asker Daniel Brejnrod, Jonathan Thorsen
MAGinator enables accurate profiling of de novo MAGs with strain-level phylogenies. Nature communications 15 (1) (2024)
Trine Zachariasen, Jakob Russel, Charisse Petersen, Gisle Alberg Vestergaard, Shiraz A Shah, Pablo Atienza Lopez, Moschoula Passali, Stuart E Turvey, Søren Johannes Sørensen, Ole Lund, Jakob Stokholm, Asker Daniel Brejnrod, Jonathan Thorsen
MAGinator enables accurate profiling of de novo MAGs with strain-level phylogenies. Nature communications 15 (1) (2024)
Wanli He, Jakob Russel, Franziska Klincke, Joseph Nesme, Søren Johannes Sørensen
Insights into the ecology of the infant gut plasmidome. Nature communications 15 (1) (2024)
Raphael Eisenhofer, Joseph Nesme, Luisa Santos-Bay, Adam Koziol, Søren Johannes Sørensen, Antton Alberdi, Ostaizka Aizpurua
A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics. Microbiology spectrum 12 (4) (2024)
Yu Fen Goh, Henriette L Røder, Siew Herng Chan, Muhammad Hafiz Ismail, Jonas S Madsen, Kai Wei Kelvin Lee, Søren Johannes Sørensen, Michael Givskov, Mette Burmølle, Scott Alan Rice, Diane McDougald
Associational Resistance to Predation by Protists in a Mixed Species Biofilm. Applied and environmental microbiology 89 (2) (2023)
Yu Fen Goh, Henriette L Røder, Siew Herng Chan, Muhammad Hafiz Ismail, Jonas S Madsen, Kai Wei Kelvin Lee, Søren Johannes Sørensen, Michael Givskov, Mette Burmølle, Scott Alan Rice, Diane McDougald
Associational Resistance to Predation by Protists in a Mixed Species Biofilm. Applied and environmental microbiology (2023)
Jonathan Thorsen, Xuan Ji Li, Shuang Peng, Rikke Bjersand Sunde, Shiraz A Shah, Madhumita Bhattacharyya, Casper Sahl Poulsen, Christina Egeø Poulsen, Cristina Leal Rodríguez, Michael Widdowson, Avidan Uriel Neumann, Urvish Trivedi, Bo Lund Chawes, Klaus Bønnelykke, Hans Bisgaard, Søren Johannes Sørensen, Jessica Lasky-Su
The airway microbiota of neonates colonized with asthma-associated pathogenic bacteria. Nature communications 14 (1) (2023)
Shiraz A Shah, Ling Deng, Jonathan Thorsen, Anders Gorm Pedersen, Moïra B Dion, Josué Leonardo Castro-Mejía, Ronalds Silins, Fie O Romme, Romain Sausset, Leon Eyrich Jessen, Eric Olo Ndela, Mathis Hjelmsø, Morten Arendt Rasmussen, Tamsin A Redgwell, Cristina Leal Rodríguez, Gisle Alberg Vestergaard, Yichang Zhang, Bo Lund Chawes, Klaus Bønnelykke, Søren Johannes Sørensen, Hans Bisgaard, Francois Enault, Jessica Lasky-Su, Sylvain Moinau, Marie-Agnès Petit, Dennis Sandris Nielsen
Expanding known viral diversity in the healthy infant gut. Nature microbiology (2023)
Cristina Leal Rodríguez, Shiraz A Shah, Morten Arendt Rasmussen, Jonathan Thorsen, Ulrika Boulund, Casper-Emil Tingskov Pedersen, Josué Leonardo Castro-Mejía, Christina Egeø Poulsen, Casper Sahl Poulsen, Ling Deng, Frej Andreas Nøhr Larsen, Michael Widdowson, Yichang Zhang, Søren Johannes Sørensen, Sylvain Moinau, Marie-Agnès Petit, Bo Lund Chawes, Klaus Bønnelykke, Dennis Sandris Nielsen, Jessica Lasky-Su
The infant gut virome is associated with preschool asthma risk independently of bacteria. Nature medicine 30 (1) (2023)
Cristina Leal Rodríguez, Shiraz A Shah, Morten Arendt Rasmussen, Jonathan Thorsen, Ulrika Boulund, Casper-Emil Tingskov Pedersen, Josué Leonardo Castro-Mejía, Christina Egeø Poulsen, Casper Sahl Poulsen, Ling Deng, Frej Andreas Nøhr Larsen, Michael Widdowson, Yichang Zhang, Søren Johannes Sørensen, Sylvain Moinau, Marie-Agnès Petit, Bo Lund Chawes, Klaus Bønnelykke, Dennis Sandris Nielsen, Jessica Lasky-Su
The infant gut virome is associated with preschool asthma risk independently of bacteria. Nature medicine (2023)
Cristina Leal Rodríguez, Shiraz A Shah, Morten Arendt Rasmussen, Jonathan Thorsen, Ulrika Boulund, Casper-Emil Tingskov Pedersen, Josué Leonardo Castro-Mejía, Christina Egeø Poulsen, Casper Sahl Poulsen, Ling Deng, Frej Andreas Nøhr Larsen, Michael Widdowson, Yichang Zhang, Søren Johannes Sørensen, Sylvain Moinau, Marie-Agnès Petit, Bo Lund Chawes, Klaus Bønnelykke, Dennis Sandris Nielsen, Jessica Lasky-Su
The infant gut virome is associated with preschool asthma risk independently of bacteria. Nature medicine 30 (1) (2023)
Yu Fen Goh, Henriette L Røder, Siew Herng Chan, Muhammad Hafiz Ismail, Jonas S Madsen, Kai Wei Kelvin Lee, Søren Johannes Sørensen, Michael Givskov, Mette Burmølle, Scott Alan Rice, Diane McDougald
Associational Resistance to Predation by Protists in a Mixed Species Biofilm. Applied and environmental microbiology 89 (2) (2023)
Xuan Ji Li, Asker Daniel Brejnrod, Jonathan Thorsen, Trine Zachariasen, Urvish Trivedi, Jakob Russel, Gisle Alberg Vestergaard, Jessica Lasky-Su, Morten Arendt Rasmussen, Søren Johannes Sørensen
Differential responses of the gut microbiome and resistome to antibiotic exposures in infants and adults. Nature communications 14 (1) (2023)
Yu Fen Goh, Henriette L Røder, Siew Herng Chan, Muhammad Hafiz Ismail, Jonas S Madsen, Kai Wei Kelvin Lee, Søren Johannes Sørensen, Michael Givskov, Mette Burmølle, Scott Alan Rice, Diane McDougald
Associational Resistance to Predation by Protists in a Mixed Species Biofilm. Applied and environmental microbiology 89 (2) (2023)
Xuan Ji Li, Asker Daniel Brejnrod, Jonathan Thorsen, Trine Zachariasen, Urvish Trivedi, Jakob Russel, Gisle Alberg Vestergaard, Jessica Lasky-Su, Morten Arendt Rasmussen, Søren Johannes Sørensen
Differential responses of the gut microbiome and resistome to antibiotic exposures in infants and adults. Nature communications 14 (1) (2023)
Joachim Johansen, Koji Atarashi, Yasumichi Arai, Nobuyoshi Hirose, Søren Johannes Sørensen, Tommi Vatanen, Olli H Laitinen, Kenya Honda, Ramnik J Xavier, Simon Rasmussen, Damian Rafal Plichta
Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan. Nature microbiology (2023)
Lorrie Maccario, Ana F Silva, Joseph Nesme, Cristina I Amador, Søren Johannes Sørensen, Vaughn S Cooper, Henriette Lyng Røder
Draft genomes of seven isolates from Danish wastewater facilities belonging to Pseudomonas , Bacillus , Pseudochrobactrum , Brevundimonas , and Pandoraea . Microbiology resource announcements (2023)
Yichao Wu, Chengxia Fu, Caroline L Peacock, Søren Johannes Sørensen, Marc A Redmile-Gordon, Ke-Qing Xiao, Chun-Hui Gao, Jun Liu, Qiaoyun Huang, Zixue Li, Peiyi Song, Yong-Guan Zhu, Jizhong Zhou, Peng Cai
Cooperative microbial interactions drive spatial segregation in porous environments. Nature communications 14 (1) (2023)
Yu Fen Goh, Henriette L Røder, Siew Herng Chan, Muhammad Hafiz Ismail, Jonas S Madsen, Kai Wei Kelvin Lee, Søren Johannes Sørensen, Michael Givskov, Mette Burmølle, Scott Alan Rice, Diane McDougald
Associational Resistance to Predation by Protists in a Mixed Species Biofilm. Applied and environmental microbiology 89 (2) (2023)
Cristina Leal Rodríguez, Shiraz A Shah, Morten Arendt Rasmussen, Jonathan Thorsen, Ulrika Boulund, Casper-Emil Tingskov Pedersen, Josué Leonardo Castro-Mejía, Christina Egeø Poulsen, Casper Sahl Poulsen, Ling Deng, Frej Andreas Nøhr Larsen, Michael Widdowson, Yichang Zhang, Søren Johannes Sørensen, Sylvain Moinau, Marie-Agnès Petit, Bo Lund Chawes, Klaus Bønnelykke, Dennis Sandris Nielsen, Jessica Lasky-Su
The infant gut virome is associated with preschool asthma risk independently of bacteria. Nature medicine 30 (1) (2023)
Sarah Camara-Wilpert, David Mayo-Muñoz, Jakob Russel, Robert D Fagerlund, Jonas Stenløkke Madsen, Peter C Fineran, Søren Johannes Sørensen, Rafael Pinilla-Redondo
Bacteriophages suppress CRISPR-Cas immunity using RNA-based anti-CRISPRs. Nature (2023)
Loreen Sommermann, Doreen Babin, Jan Helge Behr, Soumitra Paul Chowdhury, Martin Sandmann, Saskia Windisch, Günter Neumann, Joseph Nesme, Søren Johannes Sørensen, Ingo Schellenberg, Michael Rothballer, Joerg Geistlinger, Kornelia Smalla, Rita Grosch
Long-Term Fertilization Strategy Impacts Rhizoctonia solani -Microbe Interactions in Soil and Rhizosphere and Defense Responses in Lettuce. Microorganisms 10 (9) (2022)
Mathilde Nejrup Hemmingsen, Andreas Larsen, Tim K Weltz, Mathias Ørholt, Sebastian Wiberg, Anne Karen Bennedsen, Camilla Bille, Lena Felicia Carstensen, Lisa Toft Jensen, Rikke Bredgaard, Vibeke Koudahl, Volker Jürgen Schmidt, Peter Vester-Glowinski, Lisbet Rosenkrantz Hölmich, Søren Johannes Sørensen, Thomas Bjarnsholt, Tine Damsgaard, Mikkel Herly
Prophylactic treatment of breast implants with a solution of gentamicin, vancomycin and cefazolin antibiotics for women undergoing breast reconstructive surgery: protocol for a randomised, double-blind, placebo-controlled trial (The BREAST-AB trial). BMJ open 12 (9) (2022)
Jonathan Thorsen, Jessica Lasky-Su, Morten Arendt Rasmussen, Michael Roggenbuck-Wedemeyer, Nadja Hawwa Vissing, Martin Steen Mortensen, Asker Daniel Brejnrod, Louise J Fleming, Andrew Bush, Graham C Roberts, Florian Singer, Urs Frey, Gunilla Hedlin, Björn Nordlund, Clare S Murray, Mahmoud I Abdel-Aziz, Simone Hashimoto, Wim van Aalderen, Anke H Maitland-van der Zee, Dominick E Shaw, Stephen J Fowler, Ana Sousa, Peter J Sterk, Kian Fan Chung, Issssswan M Adcock, Ratko Djukanović, Charles Auffray, Aruna T Bansal, Scott Wagers, Bo Lund Chawes, Klaus Bønnelykke, Søren Johannes Sørensen, Hans Bisgaard
Asthma and Wheeze Severity and the Oropharyngeal Microbiota in Children and Adolescents. Annals of the American Thoracic Society 19 (12) (2022)
Birgit Wolters, Kristin Hauschild, Khald Blau, Ines Mulder, Benjamin Justus Heyde, Søren Johannes Sørensen, Jan Siemens, Sven Jechalke, Kornelia Smalla, Joseph Nesme
Biosolids for safe land application: does wastewater treatment plant size matters when considering antibiotics, pollutants, microbiome, mobile genetic elements and associated resistance genes? Environmental microbiology 24 (3) (2022)
Tomer Orevi, Søren Johannes Sørensen, Nadav Kashtan
Droplet size and surface hydrophobicity enhance bacterial plasmid transfer rates in microscopic surface wetness. ISME communications 2 (1) (2022)
Shaodong Wei, Asker Daniel Brejnrod, Urvish Trivedi, Martin Steen Mortensen, Mette Yun Johansen, Kristian Karstoft, Allan Arthur Vaag, Mathias Ried-Larsen, Søren Johannes Sørensen
Impact of intensive lifestyle intervention on gut microbiota composition in type 2 diabetes: a post-hoc analysis of a randomized clinical trial. Gut microbes 14 (1) (2022)
Fernando Meyer, Adrian Fritz, Zhi-Luo Deng, David Koslicki, Till Robin Lesker, Alexey Gurevich, Gary Robertson, Mohammed Alser, Dmitry Antipov, Francesco Beghini, Denis Bertrand, Jaqueline J Brito, C Titus Brown, Jan P Buchmann, Aydin Buluç, Bo Chen, Rayan Chikhi, Philip Thomas Lanken Conradsen Clausen, Alexandru Cristian, Piotr Wojciech Dabrowski, Aaron E Darling, Rob Egan, Eleazar Eskin, Evangelos Georganas, Eugene Goltsman, Melissa A Gray, Lars Hestbjerg Hansen, Steven Hofmeyr, Pingqin Huang, Luiz Irber, Huijue Jia, Tue Sparholt Jørgensen, Silas D Kieser, Terje Klemetsen, Axel Kola, Mikhail Kolmogorov, Anton Korobeynikov, Jason Kwan, Nathan LaPierre, Claire Lemaitre, Chenhao Li, Antoine Limasset, Fábio Malcher Miranda, Serghei Mangul, Vanessa R Marcelino, Camille Marchet, Pierre Marijon, Dmitry Meleshko, Daniel R Mende, Alessio Milanese, Niranjan Nagarajan, Jakob Nissen, Sergey Nurk, Leonid Oliker, Lucas Paoli, Pierre Peterlongo, Vitor C Piro, Jacob S Porter, Simon Rasmussen, Evan R Rees, Knut Reinert, Bernhard Y Renard, Espen Mikal Robertsen, Gail L Rosen, Hans-Joachim Ruscheweyh, Varuni Sarwal, Nicola Segata, Enrico Seiler, Lizhen Shi, Fengzhu Sun, Shinichi Sunagawa, Søren Johannes Sørensen, Ashleigh Thomas, Chengxuan Tong, Mirko Trajkovski, Julien Tremblay, Gherman Uritskiy, Riccardo Vicedomini, Zhengyang Wang, Ziye Wang, Zhong Wang, Andrew Warren, Nils Peder Willassen, Katherine Yelick, Ronghui You, Georg Zeller, Zhengqiao Zhao, Shanfeng Zhu, Jie Zhu, Ruben Garrido-Oter, Petra Gastmeier, Stéphane Hacquard, Susanne Häußler, Ariane Khaledi, Friederike Maechler, Fantin Mesny, Simona Radutoiu, Paul Schulze-Lefert, Nathiana Smit, Till Strowig, Andreas Bremges, Alexander Sczyrba, Alice Carolyn McHardy
Critical Assessment of Metagenome Interpretation: the second round of challenges. Nature methods 19 (4) (2022)
Joachim Johansen, Damian Rafal Plichta, Jakob Nybo Nissen, Marie Louise Jespersen, Shiraz A Shah, Ling Deng, Jessica Lasky-Su, Hans Bisgaard, Dennis Sandris Nielsen, Søren Johannes Sørensen, Simon Rasmussen
Genome binning of viral entities from bulk metagenomics data. Nature communications 13 (1) (2022)
Alexander Kurilshikov, Carolina Medina-Gomez, Rodrigo Bacigalupe, Djawad Radjabzadeh, Jun Wang, Ayse Demirkan, Caroline Ivanne Le Roy, Juan Antonio Raygoza Garay, Casey T Finnicum, Xing-Rong Liu, Daria V Zhernakova, Marc Jan Bonder, Tue Haldor Hansen, Fabian Frost, Malte Christoph Rühlemann, Williams Turpin, Jee-Young Moon, Han-Na Kim, Kreete Lüll, Elad Barkan, Shiraz A Shah, Myriam Fornage, Joanna Szopinska-Tokov, Zachary D Wallen, Dmitrii Borisevich, Lars Agreus, Anna Andreasson, Corinna Bang, Larbi Bedrani, Jordana T Bell, Hans Bisgaard, Michael Boehnke, Dorret I Boomsma, Robert D Burk, Annique A J Claringbould, Kenneth Croitoru, Gareth E Davies, Cornelia M Van Duijn, Liesbeth Duijts, Gwen Falony, Jingyuan Fu, Adriaan van der Graaf, Torben Hansen, Georg Homuth, David A Hughes, Richard G Ijzerman, Matthew A Jackson, Vincent W V Jaddoe, Marie Joossens, Torben Jørgensen, Daniel Keszthelyi, Rob Knight, Markku Laakso, Matthias Laudes, Lenore J Launer, Wolfgang Lieb, Aldons J Lusis, Ad A M Masclee, Henriette A Moll, Zlatan Mujagic, Qi Qibin, Daphna Rothschild, Hocheol Shin, Søren Johannes Sørensen, Claire J Steves, Jonathan Thorsen, Nicholas John Timpson, Raul Yhossef Tito Tadeo, Sara Vieira-Silva, Linus Völker, Henry Völzke, Urmo Võsa, Kaitlin H Wade, Susanna Walter, Kyoko Watanabe, Stefan Weiss, Frank U Weiss, Omer Weissbrod, Harm-Jan Westra, Gonneke Willemsen, Haydeh Payami, Daisy M A E Jonkers, Alejandro Arias Vasquez, Eco J C de Geus, Katie A Meyer, Jessica Lasky-Su, Eran Segal, Elin Org, Cisca Wijmenga, Hyung-Lae Kim, Robert C Kaplan, Timothy D Spector, Andre G Uitterlinden, Fernando Rivadeneira, Andre Franke, Markus M Lerch, Lude Franke, Serena Sanna, Mauro D'Amato, Oluf Pedersen, Andrew D Paterson, Robert Kraaij, Jeroen Raes, Alexandra Zhernakova
Large-scale association analyses identify host factors influencing human gut microbiome composition. Nature genetics 53 (2) (2021)
Yan Hui, Birgitte Smith, Martin Steen Mortensen, Lukasz Krych, Søren Johannes Sørensen, Gorm Greisen, Karen Angeliki Krogfelt, Dennis Sandris Nielsen
The effect of early probiotic exposure on the preterm infant gut microbiome development. Gut microbes 13 (1) (2021)
Rafael Pinilla-Redondo, Jakob Russel, David Mayo-Muñoz, Shiraz A Shah, Roger A Garrett, Joseph Nesme, Jonas S Madsen, Peter C Fineran, Søren Johannes Sørensen
CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids. Nucleic acids research (2021)
Michelle A Schorn, Stefan Verhoeven, Lars Ridder, Florian Huber, Deepa D Acharya, Alexander A Aksenov, Gajender Aleti, Jamshid Amiri Moghaddam, Allegra T Aron, Saefuddin Aziz, Anelize Bauermeister, Katherine D Bauman, Martin Baunach, Christine Beemelmanns, J Michael Beman, María Victoria Berlanga-Clavero, Alex A Blacutt, Helge B Bode, Anne Boullie, Asker Brejnrod, Tim S Bugni, Alexandra Calteau, Liu Cao, Víctor J Carrión, Raquel Castelo-Branco, Shaurya Chanana, Alexander B Chase, Marc G Chevrette, Leticia V Costa-Lotufo, Jason M Crawford, Cameron R Currie, Bart Cuypers, Tam Dang, Tristan de Rond, Alyssa M Demko, Elke Dittmann, Chao Du, Christopher Drozd, Jean-Claude Dujardin, Rachel J Dutton, Anna Edlund, David Peter Fewer, Neha Garg, Julia M Gauglitz, Emily C Gentry, Lena Gerwick, Evgenia Glukhov, Harald Gross, Muriel Gugger, Dulce G Guillén Matus, Eric J N Helfrich, Benjamin-Florian Hempel, Jae-Seoun Hur, Marianna Iorio, Paul R Jensen, Kyo-Bin Kang, Leonard Kaysser, Michael P Snyder, Chung Sub Kim, Ki Hyun Kim, Irina Koester, Gabriele M König, Tiago Leao, Seoung Rak Lee, Yi-Yuan Lee, Xuanji Li, Jessica C Little, Katherine N Maloney, Daniel Männle, Christian Martin H, Andrew C McAvoy, William W Metcalf, Hosein Mohimani, Carlos Molina-Santiago, Bradley S Moore, Michael W Mullowney, Mitchell N Muskat, Louis-Felix Nothias, Ellis C O'Neill, Elizabeth I Parkinson, Daniel Petras, Jörn Piel, Emily C Pierce, Karine Pires, Raphael Reher, Diego Romero, M Caroline Roper, Michael Rust, Hamada Saad, Carmen Saenz, Laura M Sanchez, Søren Johannes Sørensen, Margherita Sosio, Roderich D Süssmuth, Douglas Sweeney, Kapil Tahlan, Regan J Thomson, Nicholas J Tobias, Amaro E Trindade-Silva, Gilles P van Wezel, Mingxun Wang, Kelly C Weldon, Fan Zhang, Nadine Ziemert, Katherine R Duncan, Max Cruesemann, Simon Rogers, Pieter C Dorrestein, Marnix H Medema, Justin Johan Jozias van der Hooft
A community resource for paired genomic and metabolomic data mining. Nature chemical biology 17 (4) (2021)
Jonathan Thorsen, Jessica Lasky-Su, Morten Arendt Rasmussen, Martin Steen Mortensen, Asker Daniel Brejnrod, Mathis Hjort Hjelmsø, Shiraz A Shah, Bo Lund Chawes, Klaus Bønnelykke, Søren Johannes Sørensen, Hans Bisgaard
The Airway Microbiota Modulates Effect of Azithromycin Treatment for Episodes of Recurrent Asthma-like Symptoms in Preschool Children: A Randomized Clinical Trial. American journal of respiratory and critical care medicine 204 (2) (2021)
Nina Bziuk, Lorrie Maccario, Benjamin Straube, Gwendolin Wehner, Søren Johannes Sørensen, Adam Schikora, Kornelia Smalla
The treasure inside barley seeds: microbial diversity and plant beneficial bacteria. Environmental microbiome 16 (1) (2021)
Vincent Dunon, Peter N Holmsgaard, Simone Dealtry, Rob Lavigne, Søren Johannes Sørensen, Kornelia Smalla, Eva M Top, Dirk Springael
Long range PCR reveals the genetic cargo of IncP-1 plasmids in the complex microbial community of an on-farm biopurification system treating pesticide contaminated wastewater. Applied and environmental microbiology (2021)
Nan Yang, Joseph Nesme, Henriette Lyng Røder, Xuanji Li, Zhangli Zuo, Morten Petersen, Mette Burmølle, Søren Johannes Sørensen
Emergent bacterial community properties induce enhanced drought tolerance in Arabidopsis. NPJ biofilms and microbiomes 7 (1) (2021)
Jessica Lasky-Su, Jonathan Thorsen, Martin J Blaser, Morten Arendt Rasmussen, Mathis Hjort Hjelmsø, Shiraz A Shah, Emil D Christensen, Bo L Chawes, Klaus Bønnelykke, Susanne B Pedersen, Martin Steen Mortensen, Asker Daniel Brejnrod, Gisle Alberg Vestergaard, Urvish Trivedi, Søren Johannes Sørensen, Hans Bisgaard
Delivery mode and gut microbial changes correlate with an increased risk of childhood asthma. Science translational medicine 12 (569) (2021)
Martin Steen Mortensen, Morten Arendt Rasmussen, Jessica Lasky-Su, Asker Daniel Brejnrod, Christina Balle, Jonathan Thorsen, Karen Angeliki Krogfelt, Hans Bisgaard, Søren Johannes Sørensen
Modeling transfer of vaginal microbiota from mother to infant in early life. eLife 10 (2021)
Rafael Pinilla-Redondo, Asmus Kalckar Olesen, Jakob Russel, Lisbeth Elvira de Vries, Lisbeth Damkjær Christensen, Sanin Musovic, Joseph Nesme, Søren Johannes Sørensen
Broad Dissemination of Plasmids across Groundwater-Fed Rapid Sand Filter Microbiomes. mBio (2021)
Stefanic Polonca, Katarina Belcijan, Barbara Kraigher, Rok Kostanjšek, Joseph Nesme, Jonas Stenløkke Madsen, Jasna Kovac, Søren Johannes Sørensen, Michiel Vos, Ines Mandic Mulec
Kin discrimination promotes horizontal gene transfer between unrelated strains in Bacillus subtilis. Nature communications 12 (1) (2021)
Silvia Tabacchioni, Stefania Passato, Patrizia Ambrosino, Liren Huang, Marina Caldara, Cristina Cantale, Jonas Hett, Antonella Del Fiore, Alessia Fiore, And Andreas Schlüter, Alexander Sczyrba, Elena Maestri, Nelson Marmiroli, Daniel Neuhoff, Joseph Nesme, Søren Johannes Sørensen, Giuseppe Aprea, Chiara Nobili, Ombretta Presenti, Giusto Giovannetti, Caterina Giovannetti, Anne Pihlanto, Andrea Brunori, Annamaria Bevivino
Identification of Beneficial Microbial Consortia and Bioactive Compounds with Potential as Plant Biostimulants for a Sustainable Agriculture. Microorganisms 9 (2) (2021)
Poonam Nasipuri, Jakob Herschend, Asker D Brejnrod, Jonas S Madsen, Roall Espersen, Birte Svensson, Mette Burmølle, Samuel Jacquiod, Søren Johannes Sørensen
Community-intrinsic properties enhance keratin degradation from bacterial consortia. PloS one 15 (1) (2020)
Urvish Trivedi, Cody Fell, Jonas S Madsen, Jake Everett, Mette Burmølle, Kendra P Rumbaugh, Søren Johannes Sørensen
Persistence and progression of staphylococcal infection in the presence of public goods. NPJ biofilms and microbiomes 6 (1) (2020)
Liguan Li, Arnaud Dechesne, Jonas Stenløkke Madsen, Joseph Nesme, Søren Johannes Sørensen, Barth F Smets
Plasmids persist in a microbial community by providing fitness benefit to multiple phylotypes. The ISME journal 14 (5) (2020)
Shashank Gupta, Mathis H Hjelmsø, Jenni Lehtimäki, Xuanji Li, Martin S Mortensen, Jakob Russel, Urvish Trivedi, Morten A Rasmussen, Jakob Stokholm, Hans Bisgaard, Søren Johannes Sørensen
Environmental shaping of the bacterial and fungal community in infant bed dust and correlations with the airway microbiota. Microbiome 8 (1) (2020)
Morten Arendt Rasmussen, Jonathan Thorsen, M G Dominguez-Bello, Martin J Blaser, M S Mortensen, Asker Daniel Brejnrod, Shiraz A Shah, M H Hjelmsø, J Lehtimäki, U Trivedi, Hans Bisgaard, Søren Johannes Sørensen, Jessica Lasky-Su
Ecological succession in the vaginal microbiota during pregnancy and birth. The ISME journal 14 (9) (2020)
Mathis H Hjelmsø, Shiraz A Shah, Jonathan Thorsen, Morten Arendt Rasmussen, Gisle Vestergaard, Martin Steen Mortensen, Asker Daniel Brejnrod, Susanne B Pedersen, Bo Lund Chawes, Klaus Bønnelykke, Søren Johannes Sørensen, Jessica Lasky-Su, Hans Bisgaard
Prenatal dietary supplements influence the infant airway microbiota in a randomized factorial clinical trial. Nature communications 11 (1) (2020)
Chun-Hui Gao, Hui Cao, Peng Cai, Søren Johannes Sørensen
The initial inoculation ratio regulates bacterial coculture interactions and metabolic capacity. The ISME journal 15 (1) (2020)
Xuanji Li, Urvish Trivedi, Asker Daniel Brejnrod, Gisle Vestergaard, Martin Steen Mortensen, Mads Frost Bertelsen, Søren Johannes Sørensen
The microbiome of captive hamadryas baboons. Animal microbiome 2 (1) (2020)
Rafael Pinilla-Redondo, Saadlee Shehreen, Nicole D Marino, Robert D Fagerlund, Warren P Tate, Søren Johannes Sørensen, Peter C Fineran, Joseph Bondy-Denomy
Discovery of multiple anti-CRISPRs highlights anti-defense gene clustering in mobile genetic elements. Nature communications 11 (1) (2020)
Shashank Gupta, Martin Steen Mortensen, Susanne Schjørring, Urvish Trivedi, Gisle Vestergaard, Jessica Lasky-Su, Hans Bisgaard, Karen Angeliki Krogfelt, Søren Johannes Sørensen
Amplicon sequencing provides more accurate microbiome information in healthy children compared to culturing. Communications biology 2 (2019)
Mehreen Anjum, Jonas Stenløkke Madsen, Joseph Nesme, Bimal Jana, Maria Wiese, Džiuginta Jasinskytė, Dennis Sandris Nielsen, Søren Johannes Sørensen, Anders Dalsgaard, Arshnee Moodley, Valeria Bortolaia, Luca Guardabassi
Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli. Antimicrobial agents and chemotherapy 63 (5) (2019)
Jonathan Thorsen, Morten Arendt Rasmussen, Johannes Waage, Martin Steen Mortensen, Asker Daniel Brejnrod, Klaus Bønnelykke, Bo Lund Chawes, Susanne B Pedersen, Søren Johannes Sørensen, Jessica Lasky-Su, Hans Bisgaard
Infant airway microbiota and topical immune perturbations in the origins of childhood asthma. Nature communications 10 (1) (2019)
Ana Paula Chung, Carina Coimbra, Pedro Farias, Romeu Francisco, Rita Branco, Francisco V Simão, Elsa Gomes, Alcides Pereira, Maria C Vila, António Fiúza, Martin S Mortensen, Søren Johannes Sørensen, Paula V Morais
Tailings microbial community profile and prediction of its functionality in basins of tungsten mine. Scientific reports 9 (1) (2019)
Arda Gülay, Susan Jane Fowler, Karolina Tatari, Bo Thamdrup, Hans-Jørgen Albrechtsen, Waleed Abu Al-Soud, Søren Johannes Sørensen, Barth F Smets
DNA- and RNA-SIP Reveal Nitrospira spp. as Key Drivers of Nitrification in Groundwater-Fed Biofilters. mBio 10 (6) (2019)
Wenzheng Liu, Samuel Jacquiod, Asker Daniel Brejnrod, Jakob Russel, Mette Burmølle, Søren Johannes Sørensen
Deciphering links between bacterial interactions and spatial organization in multispecies biofilms. The ISME journal 13 (12) (2019)
Jonas S Madsen, Ole Hylling, Samuel Jacquiod, Sophia Pécastaings, Lars H Hansen, Leise Riber, Gisle Vestergaard, Søren Johannes Sørensen
An intriguing relationship between the cyclic diguanylate signaling system and horizontal gene transfer. The ISME journal 12 (9) (2018)
Prem Krishnan Raghupathi, Jerneja Zupančič, Asker Daniel Brejnrod, Samuel Jacquiod, Kurt Houf, Mette Burmølle, Nina Gunde-Cimerman, Søren Johannes Sørensen
Microbial Diversity and Putative Opportunistic Pathogens in Dishwasher Biofilm Communities. Applied and environmental microbiology 84 (5) (2018)
Urvish Trivedi, Jonas S Madsen, Jake Everett, Cody Fell, Jakob Russel, Jakob Haaber, Heidi A Crosby, Alexander R Horswill, Mette Burmølle, Kendra P Rumbaugh, Søren Johannes Sørensen
Staphylococcus aureus coagulases are exploitable yet stable public goods in clinically relevant conditions. Proceedings of the National Academy of Sciences of the United States of America 115 (50) (2018)
Henriette L Røder, Jakob Herschend, Jakob Russel, Michala F Andersen, Jonas S Madsen, Søren Johannes Sørensen, Mette Burmølle
Enhanced bacterial mutualism through an evolved biofilm phenotype. The ISME journal 12 (11) (2018)
Wenzheng Liu, Jakob Russel, Mette Burmølle, Søren Johannes Sørensen, Jonas S Madsen
Micro-scale intermixing: a requisite for stable and synergistic co-establishment in a four-species biofilm. The ISME journal 12 (8) (2018)
Rafael Pinilla-Redondo, Leise Riber, Søren Johannes Sørensen
Fluorescence Recovery Allows the Implementation of a Fluorescence Reporter Gene Platform Applicable for the Detection and Quantification of Horizontal Gene Transfer in Anoxic Environments. Applied and environmental microbiology 84 (6) (2018)
Jakob Russel, Henriette L Røder, Jonas S Madsen, Mette Burmølle, Søren Johannes Sørensen
Antagonism correlates with metabolic similarity in diverse bacteria. Proceedings of the National Academy of Sciences of the United States of America 114 (40) (2017)

Søren Johannes Sørensen.css-eqlu8i{font-size:small;padding-left:4px;} (Søren Sørensen, S J Sørensen, Sören J Sörensen, Søren J Sørensen)

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Søren Johannes Sørensen (Søren Sørensen, S J Sørensen, Sören J Sörensen, Søren J Sørensen)