Shyam Gopalakrishnan (Shyam Gopalakrishan)

Scopus Author ID Scopus Author ID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 24

Top Venues

bioRxiv : the preprint server for biology

Science (New York, N.Y.)

Molecular ecology resources

Bioinformatics (Oxford, England)

University of Copenhagen

University of Michigan (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Copenhagen Sep 01 2018

Denmark

Assistant Professor :: Natural History Museum of Denmark

University of Copenhagen Jul 01 2015 - Aug 31 2018

Denmark

Postdoctoral Researcher :: Natural History Museum of Denmark

University of Chicago Oct 01 2011 - May 31 2015

United States

Postdoctoral Scholar :: Human Genetics

University of Michigan Jan 01 2005 - Aug 31 2011

United States

Graduate Student Research Assistant :: Biostatistics

Infosys Technologies Ltd Sep 01 2002 - Jul 31 2003

India

Software Engineer

Education History

University of Michigan

United States

PHD :: Biostatistics

University of Michigan

United States

MSC :: Biostatistics

University of Michigan

United States

MSC :: Electrical Engineering and Computer Science

Publications

Katia Bougiouri, Sabhrina Gita Aninta, Sophy Charlton, Alexander C Harris, Alberto Carmagnini, Giedrė Piličiauskienė, Tatiana R Feuerborn, Lachie Scarsbrook, Kristina Tabadda, Povilas Blaževičius, Heidi G Parker, Shyam Gopalakrishnan, Greger Larson, Elaine A Ostrander, Evan K Irving-Pease, Laurent Alain François Frantz, Fernando Racimo
Imputation of ancient canid genomes reveals inbreeding history over the past 10,000 years. bioRxiv : the preprint server for biology (2024)
Katia Bougiouri, Sophy Charlton, Alexander C Harris, Alberto Carmagnini, Giedrė Piličiauskienė, Tatiana R Feuerborn, Lachie Scarsbrook, Kristina Tabadda, Povilas Blaževičius, Heidi G Parker, Shyam Gopalakrishnan, Greger Larson, Elaine A Ostrander, Evan K Irving-Pease, Laurent Alain François Frantz, Fernando Racimo
Imputation of ancient canid genomes reveals inbreeding history over the past 10,000 years. bioRxiv : the preprint server for biology (2024)
Katia Bougiouri, Sophy Charlton, Alexander C Harris, Alberto Carmagnini, Giedrė Piličiauskienė, Tatiana R Feuerborn, Lachie Scarsbrook, Kristina Tabadda, Povilas Blaževičius, Heidi G Parker, Shyam Gopalakrishnan, Greger Larson, Elaine A Ostrander, Evan K Irving-Pease, Laurent Alain François Frantz, Fernando Racimo
Imputation of ancient canid genomes reveals inbreeding history over the past 10,000 years. bioRxiv : the preprint server for biology (2024)
Katia Bougiouri, Sabhrina Gita Aninta, Sophy Charlton, Alexander C Harris, Alberto Carmagnini, Giedrė Piličiauskienė, Tatiana R Feuerborn, Lachie Scarsbrook, Kristina Tabadda, Povilas Blaževičius, Heidi G Parker, Shyam Gopalakrishnan, Greger Larson, Elaine A Ostrander, Evan K Irving-Pease, Laurent Alain François Frantz, Fernando Racimo
Imputation of ancient canid genomes reveals inbreeding history over the past 10,000 years. bioRxiv : the preprint server for biology (2024)
Katia Bougiouri, Sabhrina Gita Aninta, Sophy Charlton, Alexander C Harris, Alberto Carmagnini, Giedrė Piličiauskienė, Tatiana R Feuerborn, Lachie Scarsbrook, Kristina Tabadda, Povilas Blaževičius, Heidi G Parker, Shyam Gopalakrishnan, Greger Larson, Elaine A Ostrander, Evan K Irving-Pease, Laurent Alain François Frantz, Fernando Racimo
Imputation of ancient canid genomes reveals inbreeding history over the past 10,000 years. bioRxiv : the preprint server for biology (2024)
Audrey T Lin, Liz Hammond-Kaarremaa, Hsiao-Lei Liu, Chris Stantis, Anne K Salomon, Michael Pavel, Susan sa'hLa mitSa Pavel, Senaqwila Sen Áḵw Wyss, Debra Qwasen Sparrow, Karen Carr, Sabhrina Gita Aninta, Angela R Perri, Jonathan Hartt, Anders Bergström, Alberto Carmagnini, Sophy Charlton, Love Dalen, Tatiana R Feuerborn, Christine A M France, Shyam Gopalakrishnan, Vaughan Grimes, Alex Harris, Gwénaëlle M Kavich, Benjamin N Sacks, Mikkel-Holger S Sinding, Pontus Skoglund, David W G Stanton, Elaine A Ostrander, Greger Larson, Chelsey G Armstrong, Laurent Alain François Frantz, Melissa T R Hawkins, Logan Kistler
The history of Coast Salish "woolly dogs" revealed by ancient genomics and Indigenous Knowledge. Science (New York, N.Y.) 382 (6676) (2023)
Dylan Feldner-Busztin, Panos Firbas Nisantzis, Shelley Jane Edmunds, Gergely Boza, Fernando Racimo, Shyam Gopalakrishnan, Morten Tønsberg Limborg, Leo Lahti, Gonzalo G de Polavieja
Dealing with dimensionality: the application of machine learning to multi-omics data. Bioinformatics (Oxford, England) 39 (2) (2023)
Dylan Feldner-Busztin, Panos Firbas Nisantzis, Shelley Jane Edmunds, Gergely Boza, Fernando Racimo, Shyam Gopalakrishnan, Morten Tønsberg Limborg, Leo Lahti, Gonzalo G de Polavieja
Dealing with dimensionality: the application of machine learning to multi-omics data. Bioinformatics (Oxford, England) 39 (2) (2023)
Germán Hernández-Alonso, Jazmín Ramos-Madrigal, Xin Sun, Camilla Hjorth Scharff-Olsen, Mikkel-Holger S Sinding, Nuno F Martins, Marta Maria Ciucani, Sarah S T Mak, Liam Thomas Lanigan, Cecilie G Clausen, Jong Bhak, Sungwon Jeon, Changjae Kim, Kyung Yeon Eo, Seong-Ho Cho, Bazartseren Boldgiv, Gankhuyag Gantulga, Zunduibaatar Unudbayasgalan, Pavel A Kosintsev, Hans K Stenøien, M Thomas P Gilbert, Shyam Gopalakrishnan
Conservation implications of elucidating the Korean wolf taxonomic ambiguity through whole-genome sequencing. Ecology and evolution 13 (8) (2023)
Jacob Agerbo Rasmussen, Kasper Rømer Villumsen, Madeleine Ernst, Martin Hansen, Torunn Forberg, Shyam Gopalakrishnan, Marcus Thomas Pius Gilbert, Anders Miki Bojesen, Karsten Kristiansen, Morten Tønsberg Limborg
A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss). Microbiome 10 (1) (2022)
Vanessa C Bieker, Paul Battlay, Bent Petersen, Xin Sun, Jonathan Wilson, Jaelle C Brealey, François Bretagnolle, Kristin Nurkowski, Christopher Lee, Fátima Sánchez Barreiro, Gregory L Owens, Jacqueline Y Lee, Fabian L Kellner, Lotte van Boheeman, Shyam Gopalakrishnan, Myriam Gaudeul, Heinz Müller-Schärer, Suzanne T Lommen, Gerhard Karrer, Bruno Chauvel, Yan Sun, Bojan Konstantinović, Love Dalen, Bushra Mirza, Loren H Rieseberg, Marcus Thomas Pius Gilbert, Kathryn A Hodgins, Michael D Martin
Uncovering the genomic basis of an extraordinary plant invasion. Science advances 8 (34) (2022)
Wei-Qiao Rao, Konstantinos Kalogeropoulos, Morten E Allentoft, Shyam Gopalakrishnan, Wei-Ning Zhao, Christopher Thomas Workman, Cecilie Knudsen, Belén Jiménez-Mena, Lorenzo Seneci, Mahsa Mousavi-Derazmahalleh, Timothy P Jenkins, Esperanza Rivera-de-Torre, Si-Qi Liu, Andreas Hougaard Laustsen
The rise of genomics in snake venom research: recent advances and future perspectives. GigaScience 11 (2022)
Fátima Sánchez Barreiro, Shyam Gopalakrishnan, Jazmín Ramos-Madrigal, Michael V Westbury, Marc de Manuel, Ashot Margaryan, Marta M Ciucani, Filipe G Vieira, Yannis Patramanis, Daniela C Kalthoff, Zena Timmons, Thomas Sicheritz-Pontén, Love Dalén, Oliver A Ryder, Guojie Zhang, Tomas Marques-Bonet, Yoshan Moodley, M Thomas P Gilbert
Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum). Molecular ecology 30 (23) (2021)
Alexander F Gileta, Jianjun Gao, Apurva S Chitre, Hannah V Bimschleger, Celine L St Pierre, Shyam Gopalakrishnan, Abraham A Palmer
Adapting Genotyping-by-Sequencing and Variant Calling for Heterogeneous Stock Rats. G3 (Bethesda, Md.) 10 (7) (2020)
Mikkel-Holger S Sinding, Shyam Gopalakrishnan, Jazmin Ramos-Madrigal, Marc de Manuel, Vladimir V Pitulko, Lukas F K Kuderna, Tatiana R Feuerborn, Laurent Alain François Frantz, Filipe Garrett Vieira, Jonas Niemann, Jose A Samaniego Castruita, Christian Carøe, Emilie U Andersen-Ranberg, Peter D Jordan, Elena Y Pavlova, Pavel A Nikolskiy, Aleksei K Kasparov, Varvara V Ivanova, Eske Willerslev, Pontus Skoglund, Merete Fredholm, Sanne Eline Wennerberg, Mads Peter Heide-Jørgensen, Rune Dietz, Christian Sonne, Morten Meldgaard, Love Dalen, Greger Larson, Bent Petersen, Thomas Arn Hansen, Lutz Bachmann, Øystein Wiig, Tomas Marques-Bonet, Anders Johannes Hansen, Marcus Thomas Pius Gilbert
Arctic-adapted dogs emerged at the Pleistocene-Holocene transition. Science (New York, N.Y.) 368 (6498) (2020)
Mikkel Skovrind, Jose Alfredo Samaniego Castruita, James Haile, Eve C Treadaway, Shyam Gopalakrishnan, Michael V Westbury, Mads Peter Heide-Jørgensen, Paul Szpak, Eline D Lorenzen
Hybridization between two high Arctic cetaceans confirmed by genomic analysis. Scientific reports 9 (1) (2019)
Theis Zetner Trolle Jensen, Jonas Niemann, Katrine Højholt Iversen, Anna K Fotakis, Shyam Gopalakrishnan, Åshild J Vågene, Mikkel Winther Pedersen, Mikkel-Holger S Sinding, Martin R Ellegaard, Morten E Allentoft, Liam T Lanigan, Alberto J Taurozzi, Sofie Holtsmark Nielsen, Michael W Dee, Martin N Mortensen, Mads C Christensen, Søren A Sørensen, Matthew J Collins, Marcus Thomas Pius Gilbert, Martin Sikora, Simon Rasmussen, Hannes Schroeder
A 5700 year-old human genome and oral microbiome from chewed birch pitch. Nature communications 10 (1) (2019)
Máire Ní Leathlobhair, Angela R Perri, Evan K Irving-Pease, Kelsey E Witt, Anna Linderholm, James Haile, Ophelie Lebrasseur, Carly Ameen, Jeffrey Blick, Adam R Boyko, Selina Brace, Yahaira Nunes Cortes, Susan J Crockford, Alison Devault, Evangelos A Dimopoulos, Morley Eldridge, Jacob Enk, Shyam Gopalakrishnan, Kevin Gori, Vaughan Grimes, Eric J Guiry, Anders Johannes Hansen, Ardern Hulme-Beaman, John R Johnson, Andrew Kitchen, Aleksei K Kasparov, Young-Mi Kwon, Pavel A Nikolskiy, Carlos Peraza Lope, Aurélie Manin, Terrance Martin, Michael Meyer, Kelsey Noack Myers, Mark Omura, Jean-Marie Rouillard, Elena Y Pavlova, Paul Sciulli, Mikkel-Holger S Sinding, Andrea Strakova, Varvara V Ivanova, Christopher Widga, Eske Willerslev, Vladimir V Pitulko, Ian Barnes, Marcus Thomas Pius Gilbert, Keith M Dobney, Ripan Singh Malhi, Elizabeth P Murchison, Greger Larson, Laurent Alain François Frantz
The evolutionary history of dogs in the Americas. Science (New York, N.Y.) 361 (6397) (2018)
Mikkel-Holger S Sinding, Shyam Gopalakrishnan, Filipe Garrett Vieira, Jose A Samaniego Castruita, Katrine Raundrup, Mads Peter Heide Jørgensen, Morten Meldgaard, Bent Petersen, Thomas Arn Hansen, Johan Brus Mikkelsen, Ulf Marquard-Petersen, Rune Dietz, Christian Sonne, Love Dalén, Lutz Bachmann, Øystein Wiig, Anders J Hansen, M Thomas P Gilbert
Population genomics of grey wolves and wolf-like canids in North America. PLoS genetics 14 (11) (2018)
Kristine Bohmann, Shyam Gopalakrishnan, Martin Nielsen, Luisa Dos Santos Bay Nielsen, Gareth Jones, Daniel G Streicker, Marcus Thomas Pius Gilbert
Using DNA metabarcoding for simultaneous inference of common vampire bat diet and population structure. Molecular ecology resources (2018)
Antton Alberdi, Ostaizka Aizpurua, Kristine Bohmann, Shyam Gopalakrishnan, Christina Lynggaard, Martin Nielsen, Marcus Thomas Pius Gilbert
Promises and pitfalls of using high-throughput sequencing for diet analysis. Molecular ecology resources 19 (2) (2018)
S Sunna Ebenesersdóttir, Marcela Sandoval Velasco, Ellen D Gunnarsdóttir, Anuradha Jagadeesan, Valdís B Guðmundsdóttir, Elísabet L Thordardóttir, Margrét S Einarsdóttir, Kristjan Helgi Swerford Moore, Ásgeir Sigurðsson, Droplaug N Magnúsdóttir, Hákon Jónsson, Steinunn Snorradóttir, Eivind Hovig, Pål Møller, Ingrid Kockum, Tomas Olsson, Lars Alfredsson, Thomas Folkmann Hansen, Thomas M Werge, Gianpiero L Cavalleri, Edmund Gilbert, Carles Lalueza-Fox, Joe W Walser, Steinunn Kristjánsdóttir, Shyam Gopalakrishnan, Lilja Árnadóttir, Ólafur Þ Magnússon, Marcus Thomas Pius Gilbert, Kári Stefánsson, Agnar Helgason
Ancient genomes from Iceland reveal the making of a human population. Science (New York, N.Y.) 360 (6392) (2018)
Shyam Gopalakrishnan, Jose A Samaniego Castruita, Mikkel-Holger S Sinding, Lukas F K Kuderna, Jannikke Räikkönen, Bent Petersen, Thomas Sicheritz-Ponten, Greger Larson, Ludovic Orlando, Tomas Marques-Bonet, Anders J Hansen, Love Dalén, M Thomas P Gilbert
The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics. BMC genomics 18 (1) (2017)
Clarissa C Parker, Shyam Gopalakrishnan, Peter Carbonetto, Natalia M Gonzales, Emily Leung, Yeonhee J Park, Emmanuel Aryee, Joe Davis, David A Blizard, Cheryl L Ackert-Bicknell, Arimantas Lionikas, Jonathan K Pritchard, Abraham A Palmer
Genome-wide association study of behavioral, physiological and gene expression traits in outbred CFW mice. Nature genetics 48 (8) (2016)

Shyam Gopalakrishnan (Shyam Gopalakrishan)

Publication Activity (10 Years)

Top Topics

Top Venues