Aparna Nathan

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 43

Top Topics

Rheumatoid Arthritis

Ankylosing Spondylitis

Regulatory T Cells

Top Venues

Nature communications

Nature reviews. Genetics

Nature genetics

This page only lists publications with an associated author ORCID identifier.

Publications

Matthew Tegtmeyer, Jatin Arora, Samira Asgari, Beth A Cimini, Ajay Nadig, Emily Peirent, Dhara Liyanage, Gregory P Way, Erin Weisbart, Aparna Nathan, Tiffany Amariuta, Kevin C Eggan, Marzieh Haghighi, Steven A McCarroll, Luke O' Connor, Anne E Carpenter, Shantanu Singh, Ralda Nehme, Soumya Raychaudhuri
High-dimensional phenotyping to define the genetic basis of cellular morphology. Nature communications 15 (1) (2024)
Matthew Tegtmeyer, Jatin Arora, Samira Asgari, Beth A Cimini, Ajay Nadig, Emily Peirent, Dhara Liyanage, Gregory P Way, Erin Weisbart, Aparna Nathan, Tiffany Amariuta, Kevin C Eggan, Marzieh Haghighi, Steven A McCarroll, Luke O' Connor, Anne E Carpenter, Shantanu Singh, Ralda Nehme, Soumya Raychaudhuri
High-dimensional phenotyping to define the genetic basis of cellular morphology. Nature communications 15 (1) (2024)
Kathryn Weinand, Saori Sakaue, Aparna Nathan, Anna Helena Jonsson, Fan Zhang, Gerald F M Watts, Majd Al Suqri, Zhu Zhu, null null, Deepak A Rao, Jennifer H Anolik, Michael B Brenner, Laura T Donlin, Kevin Wei, Soumya Raychaudhuri
The chromatin landscape of pathogenic transcriptional cell states in rheumatoid arthritis. Nature communications 15 (1) (2024)
Garrett S Dunlap, Aaron Wagner, Nida Meednu, Ruoqiao Huiyi Wang, Fan Zhang, Jabea Cyril Ekabe, Anna Helena Jonsson, Kevin Wei, Saori Sakaue, Aparna Nathan, null null, Vivian P Bykerk, Laura T Donlin, Susan M Goodman, Gary S Firestein, David L Boyle, V Michael Holers, Larry W Moreland, Darren Tabechian, Costantino Pitzalis, Andrew Filer, Soumya Raychaudhuri, Michael B Brenner, Juilee Thakar, Andrew McDavid, Deepak A Rao, Jennifer H Anolik
Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium. Nature communications 15 (1) (2024)
Matthew Tegtmeyer, Jatin Arora, Samira Asgari, Beth A Cimini, Ajay Nadig, Emily Peirent, Dhara Liyanage, Gregory P Way, Erin Weisbart, Aparna Nathan, Tiffany Amariuta, Kevin C Eggan, Marzieh Haghighi, Steven A McCarroll, Luke O' Connor, Anne E Carpenter, Shantanu Singh, Ralda Nehme, Soumya Raychaudhuri
High-dimensional phenotyping to define the genetic basis of cellular morphology. Nature communications 15 (1) (2024)
Matthew Tegtmeyer, Jatin Arora, Samira Asgari, Beth A Cimini, Ajay Nadig, Emily Peirent, Dhara Liyanage, Gregory P Way, Erin Weisbart, Aparna Nathan, Tiffany Amariuta, Kevin C Eggan, Marzieh Haghighi, Steven A McCarroll, Luke O' Connor, Anne E Carpenter, Shantanu Singh, Ralda Nehme, Soumya Raychaudhuri
High-dimensional phenotyping to define the genetic basis of cellular morphology. Nature communications 15 (1) (2024)
Matthew Tegtmeyer, Jatin Arora, Samira Asgari, Beth A Cimini, Ajay Nadig, Emily Peirent, Dhara Liyanage, Gregory P Way, Erin Weisbart, Aparna Nathan, Tiffany Amariuta, Kevin C Eggan, Marzieh Haghighi, Steven A McCarroll, Luke O' Connor, Anne E Carpenter, Shantanu Singh, Ralda Nehme, Soumya Raychaudhuri
High-dimensional phenotyping to define the genetic basis of cellular morphology. Nature communications 15 (1) (2024)
Kaitlyn A Lagattuta, Hannah L Park, Laurie Rumker, Kazuyoshi Ishigaki, Aparna Nathan, Soumya Raychaudhuri
The genetic basis of autoimmunity seen through the lens of T cell functional traits. Nature communications 15 (1) (2024)
Kaitlyn A Lagattuta, Hannah L Park, Laurie Rumker, Kazuyoshi Ishigaki, Aparna Nathan, Soumya Raychaudhuri
The genetic basis of autoimmunity seen through the lens of T cell functional traits. Nature communications 15 (1) (2024)
Kaitlyn A Lagattuta, Hannah L Park, Laurie Rumker, Kazuyoshi Ishigaki, Aparna Nathan, Soumya Raychaudhuri
The genetic basis of autoimmunity seen through the lens of T cell functional traits. Nature communications 15 (1) (2024)
Garrett S Dunlap, Aaron Wagner, Nida Meednu, Ruoqiao Huiyi Wang, Fan Zhang, Jabea Cyril Ekabe, Anna Helena Jonsson, Kevin Wei, Saori Sakaue, Aparna Nathan, null null, Vivian P Bykerk, Laura T Donlin, Susan M Goodman, Gary S Firestein, David L Boyle, V Michael Holers, Larry W Moreland, Darren Tabechian, Costantino Pitzalis, Andrew Filer, Soumya Raychaudhuri, Michael B Brenner, Juilee Thakar, Andrew McDavid, Deepak A Rao, Jennifer H Anolik
Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium. Nature communications 15 (1) (2024)
Matthew Tegtmeyer, Jatin Arora, Samira Asgari, Beth A Cimini, Ajay Nadig, Emily Peirent, Dhara Liyanage, Gregory P Way, Erin Weisbart, Aparna Nathan, Tiffany Amariuta, Kevin C Eggan, Marzieh Haghighi, Steven A McCarroll, Luke O' Connor, Anne E Carpenter, Shantanu Singh, Ralda Nehme, Soumya Raychaudhuri
High-dimensional phenotyping to define the genetic basis of cellular morphology. Nature communications 15 (1) (2024)
Kathryn Weinand, Saori Sakaue, Aparna Nathan, Anna Helena Jonsson, Fan Zhang, Gerald F M Watts, Majd Al Suqri, Zhu Zhu, null null, Deepak A Rao, Jennifer H Anolik, Michael B Brenner, Laura T Donlin, Kevin Wei, Soumya Raychaudhuri
The chromatin landscape of pathogenic transcriptional cell states in rheumatoid arthritis. Nature communications 15 (1) (2024)
Victor E Nieto-Caballero, Josephine F Reijneveld, Angel Ruvalcaba, Gabriel Innocenzi, Nalin Abeydeera, Samira Asgari, Kattya Lopez, Sarah K Iwany, Yang Luo, Aparna Nathan, Daniela Fernandez-Salinas, Marcos Chiñas, Chuan-Chin Huang, Zibiao Zhang, Segundo Ramos Leon, Roger I Calderon, Leonid Lecca, Jonathan M Budzik, Megan B Murray, Ildiko Van Rhijn, Soumya Raychaudhuri, D Branch Moody, Sara A Suliman, Maria Gutierrez-Arcelus
History of tuberculosis disease is associated with genetic regulatory variation in Peruvians. PLoS genetics 20 (6) (2024)
Garrett S Dunlap, Aaron Wagner, Nida Meednu, Ruoqiao Huiyi Wang, Fan Zhang, Jabea Cyril Ekabe, Anna Helena Jonsson, Kevin Wei, Saori Sakaue, Aparna Nathan, null null, Vivian P Bykerk, Laura T Donlin, Susan M Goodman, Gary S Firestein, David L Boyle, V Michael Holers, Larry W Moreland, Darren Tabechian, Costantino Pitzalis, Andrew Filer, Soumya Raychaudhuri, Michael B Brenner, Juilee Thakar, Andrew McDavid, Deepak A Rao, Jennifer H Anolik
Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium. Nature communications 15 (1) (2024)
Kathryn Weinand, Saori Sakaue, Aparna Nathan, Anna Helena Jonsson, Fan Zhang, Gerald F M Watts, Majd Al Suqri, Zhu Zhu, null null, Deepak A Rao, Jennifer H Anolik, Michael B Brenner, Laura T Donlin, Kevin Wei, Soumya Raychaudhuri
The chromatin landscape of pathogenic transcriptional cell states in rheumatoid arthritis. Nature communications 15 (1) (2024)
Matthew Tegtmeyer, Jatin Arora, Samira Asgari, Beth A Cimini, Ajay Nadig, Emily Peirent, Dhara Liyanage, Gregory P Way, Erin Weisbart, Aparna Nathan, Tiffany Amariuta, Kevin C Eggan, Marzieh Haghighi, Steven A McCarroll, Luke O' Connor, Anne E Carpenter, Shantanu Singh, Ralda Nehme, Soumya Raychaudhuri
High-dimensional phenotyping to define the genetic basis of cellular morphology. Nature communications 15 (1) (2024)
Matthew Tegtmeyer, Jatin Arora, Samira Asgari, Beth A Cimini, Ajay Nadig, Emily Peirent, Dhara Liyanage, Gregory P Way, Erin Weisbart, Aparna Nathan, Tiffany Amariuta, Kevin C Eggan, Marzieh Haghighi, Steven A McCarroll, Luke O' Connor, Anne E Carpenter, Shantanu Singh, Ralda Nehme, Soumya Raychaudhuri
High-dimensional phenotyping to define the genetic basis of cellular morphology. Nature communications 15 (1) (2024)
Kaitlyn A Lagattuta, Hannah L Park, Laurie Rumker, Kazuyoshi Ishigaki, Aparna Nathan, Soumya Raychaudhuri
The genetic basis of autoimmunity seen through the lens of T cell functional traits. Nature communications 15 (1) (2024)
Kaitlyn A Lagattuta, Hannah L Park, Laurie Rumker, Kazuyoshi Ishigaki, Aparna Nathan, Soumya Raychaudhuri
The genetic basis of autoimmunity seen through the lens of T cell functional traits. Nature communications 15 (1) (2024)
Kathryn Weinand, Saori Sakaue, Aparna Nathan, Anna Helena Jonsson, Fan Zhang, Gerald F M Watts, Majd Al Suqri, Zhu Zhu, null null, Deepak A Rao, Jennifer H Anolik, Michael B Brenner, Laura T Donlin, Kevin Wei, Soumya Raychaudhuri
The chromatin landscape of pathogenic transcriptional cell states in rheumatoid arthritis. Nature communications 15 (1) (2024)
Garrett S Dunlap, Aaron Wagner, Nida Meednu, Ruoqiao Huiyi Wang, Fan Zhang, Jabea Cyril Ekabe, Anna Helena Jonsson, Kevin Wei, Saori Sakaue, Aparna Nathan, null null, Vivian P Bykerk, Laura T Donlin, Susan M Goodman, Gary S Firestein, David L Boyle, V Michael Holers, Larry W Moreland, Darren Tabechian, Costantino Pitzalis, Andrew Filer, Soumya Raychaudhuri, Michael B Brenner, Juilee Thakar, Andrew McDavid, Deepak A Rao, Jennifer H Anolik
Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium. Nature communications 15 (1) (2024)
Victor E Nieto-Caballero, Josephine F Reijneveld, Angel Ruvalcaba, Gabriel Innocenzi, Nalin Abeydeera, Samira Asgari, Kattya Lopez, Sarah K Iwany, Yang Luo, Aparna Nathan, Daniela Fernandez-Salinas, Marcos Chiñas, Chuan-Chin Huang, Zibiao Zhang, Segundo Ramos Leon, Roger I Calderon, Leonid Lecca, Jonathan M Budzik, Megan B Murray, Ildiko Van Rhijn, Soumya Raychaudhuri, D Branch Moody, Sara A Suliman, Maria Gutierrez-Arcelus
History of tuberculosis disease is associated with genetic regulatory variation in Peruvians. PLoS genetics 20 (6) (2024)
Victor E Nieto-Caballero, Josephine F Reijneveld, Angel Ruvalcaba, Gabriel Innocenzi, Nalin Abeydeera, Samira Asgari, Kattya Lopez, Sarah K Iwany, Yang Luo, Aparna Nathan, Daniela Fernandez-Salinas, Marcos Chiñas, Chuan-Chin Huang, Zibiao Zhang, Segundo Ramos Leon, Roger I Calderon, Leonid Lecca, Jonathan M Budzik, Megan B Murray, Ildiko Van Rhijn, Soumya Raychaudhuri, D Branch Moody, Sara A Suliman, Maria Gutierrez-Arcelus
History of tuberculosis disease is associated with genetic regulatory variation in Peruvians. PLoS genetics 20 (6) (2024)
Matthew Tegtmeyer, Jatin Arora, Samira Asgari, Beth A Cimini, Ajay Nadig, Emily Peirent, Dhara Liyanage, Gregory P Way, Erin Weisbart, Aparna Nathan, Tiffany Amariuta, Kevin C Eggan, Marzieh Haghighi, Steven A McCarroll, Luke O' Connor, Anne E Carpenter, Shantanu Singh, Ralda Nehme, Soumya Raychaudhuri
High-dimensional phenotyping to define the genetic basis of cellular morphology. Nature communications 15 (1) (2024)
Victor E Nieto-Caballero, Josephine F Reijneveld, Angel Ruvalcaba, Gabriel Innocenzi, Nalin Abeydeera, Samira Asgari, Kattya Lopez, Sarah K Iwany, Yang Luo, Aparna Nathan, Daniela Fernandez-Salinas, Marcos Chiñas, Chuan-Chin Huang, Zibiao Zhang, Segundo Ramos Leon, Roger I Calderon, Leonid Lecca, Jonathan M Budzik, Megan B Murray, Ildiko Van Rhijn, Soumya Raychaudhuri, D Branch Moody, Sara A Suliman, Maria Gutierrez-Arcelus
History of tuberculosis disease is associated with genetic regulatory variation in Peruvians. PLoS genetics 20 (6) (2024)
Matthew Tegtmeyer, Jatin Arora, Samira Asgari, Beth A Cimini, Ajay Nadig, Emily Peirent, Dhara Liyanage, Gregory P Way, Erin Weisbart, Aparna Nathan, Tiffany Amariuta, Kevin C Eggan, Marzieh Haghighi, Steven A McCarroll, Luke O' Connor, Anne E Carpenter, Shantanu Singh, Ralda Nehme, Soumya Raychaudhuri
High-dimensional phenotyping to define the genetic basis of cellular morphology. Nature communications 15 (1) (2024)
Kaitlyn A Lagattuta, Hannah L Park, Laurie Rumker, Kazuyoshi Ishigaki, Aparna Nathan, Soumya Raychaudhuri
The genetic basis of autoimmunity seen through the lens of T cell functional traits. Nature communications 15 (1) (2024)
Matthew Tegtmeyer, Jatin Arora, Samira Asgari, Beth A Cimini, Ajay Nadig, Emily Peirent, Dhara Liyanage, Gregory P Way, Erin Weisbart, Aparna Nathan, Tiffany Amariuta, Kevin C Eggan, Marzieh Haghighi, Steven A McCarroll, Luke O' Connor, Anne E Carpenter, Shantanu Singh, Ralda Nehme, Soumya Raychaudhuri
High-dimensional phenotyping to define the genetic basis of cellular morphology. Nature communications 15 (1) (2024)
Garrett S Dunlap, Aaron Wagner, Nida Meednu, Ruoqiao Huiyi Wang, Fan Zhang, Jabea Cyril Ekabe, Anna Helena Jonsson, Kevin Wei, Saori Sakaue, Aparna Nathan, null null, Vivian P Bykerk, Laura T Donlin, Susan M Goodman, Gary S Firestein, David L Boyle, V Michael Holers, Larry W Moreland, Darren Tabechian, Costantino Pitzalis, Andrew Filer, Soumya Raychaudhuri, Michael B Brenner, Juilee Thakar, Andrew McDavid, Deepak A Rao, Jennifer H Anolik
Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium. Nature communications 15 (1) (2024)
Garrett S Dunlap, Aaron Wagner, Nida Meednu, Ruoqiao Huiyi Wang, Fan Zhang, Jabea Cyril Ekabe, Anna Helena Jonsson, Kevin Wei, Saori Sakaue, Aparna Nathan, null null, Vivian P Bykerk, Laura T Donlin, Susan M Goodman, Gary S Firestein, David L Boyle, V Michael Holers, Larry W Moreland, Darren Tabechian, Costantino Pitzalis, Andrew Filer, Soumya Raychaudhuri, Michael B Brenner, Juilee Thakar, Andrew McDavid, Deepak A Rao, Jennifer H Anolik
Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium. Nature communications 15 (1) (2024)
Kaitlyn A Lagattuta, Hannah L Park, Laurie Rumker, Kazuyoshi Ishigaki, Aparna Nathan, Soumya Raychaudhuri
The genetic basis of autoimmunity seen through the lens of T cell functional traits. Nature communications 15 (1) (2024)
Joyce B Kang, Amber Z Shen, Saisriram Gurajala, Aparna Nathan, Laurie Rumker, Vitor R C Aguiar, Cristian Valencia, Kaitlyn A Lagattuta, Fan Zhang, Anna Helena Jonsson, Seyhan Yazar, Jose Alquicira-Hernandez, Hamed Khalili, Ashwin N Ananthakrishnan, Karthik A Jagadeesh, Kushal K Dey, null null, Mark J Daly, Ramnik J Xavier, Laura T Donlin, Jennifer H Anolik, Joseph E Powell, Deepak A Rao, Michael B Brenner, Maria Gutierrez-Arcelus, Yang Luo, Saori Sakaue, Soumya Raychaudhuri
Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution. Nature genetics (2023)
Anna S E Cuomo, Aparna Nathan, Soumya Raychaudhuri, Daniel G MacArthur, Joseph E Powell
Single-cell genomics meets human genetics. Nature reviews. Genetics (2023)
Anika Gupta, Kathryn Weinand, Aparna Nathan, Saori Sakaue, Martin Jinye Zhang, null null, Laura Donlin, Kevin Wei, Alkes L Price, Tiffany Amariuta, Soumya Raychaudhuri
Dynamic regulatory elements in single-cell multimodal data implicate key immune cell states enriched for autoimmune disease heritability. Nature genetics (2023)
Anna S E Cuomo, Aparna Nathan, Soumya Raychaudhuri, Daniel G MacArthur, Joseph E Powell
Single-cell genomics meets human genetics. Nature reviews. Genetics (2023)
Anna S E Cuomo, Aparna Nathan, Soumya Raychaudhuri, Daniel G MacArthur, Joseph E Powell
Single-cell genomics meets human genetics. Nature reviews. Genetics (2023)
Joyce B Kang, Amber Z Shen, Saori Sakaue, Yang Luo, Saisriram Gurajala, Aparna Nathan, Laurie Rumker, Vitor R C Aguiar, Cristian Valencia, Kaitlyn Lagattuta, Fan Zhang, Anna Helena Jonsson, Seyhan Yazar, Jose Alquicira Hernandez, Hamed Khalili, Ashwin N Ananthakrishnan, Karthik Jagadeesh, Kushal Dey, null null, Mark J Daly, Ramnik J Xavier, Laura T Donlin, Jennifer H Anolik, Joseph E Powell, Deepak A Rao, Michael B Brenner, Maria Gutierrez-Arcelus, Soumya Raychaudhuri
Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution. medRxiv : the preprint server for health sciences (2023)
Anna S E Cuomo, Aparna Nathan, Soumya Raychaudhuri, Daniel G MacArthur, Joseph E Powell
Single-cell genomics meets human genetics. Nature reviews. Genetics (2023)
Aparna Nathan, Samira Asgari, Kazuyoshi Ishigaki, Cristian Valencia, Tiffany Amariuta, Yang Luo, Jessica I Beynor, Yuriy Baglaenko, Sara Suliman, Alkes L Price, Leonid Lecca, Megan B Murray, D Branch Moody, Soumya Raychaudhuri
Single-cell eQTL models reveal dynamic T cell state dependence of disease loci. Nature 606 (7912) (2022)
Aparna Nathan, Jessica I Beynor, Yuriy Baglaenko, Sara A Suliman, Kazuyoshi Ishigaki, Samira Asgari, Chuan-Chin Huang, Yang Luo, Zibiao Zhang, Kattya Lopez, Cecilia S Lindestam Arlehamn, Joel D Ernst, Judith Jimenez, Roger I Calderon, Leonid Lecca, Ildiko Van Rhijn, D Branch Moody, Megan B Murray, Soumya Raychaudhuri
Multimodally profiling memory T cells from a tuberculosis cohort identifies cell state associations with demographics, environment and disease. Nature immunology 22 (6) (2021)
Nirmala Akula, Stefano Marenco, Kory Johnson, Ningping Feng, Kevin Zhu, Anton Schulmann, Winston Corona, Xueying Jiang, Joanna Cross, Bryce England, Aparna Nathan, Sevilla Detera-Wadleigh, Qing Xu, Pavan K Auluck, Kwangmi An, Robin Kramer, Jose Apud, Brent T Harris, C Harker Rhodes, Barbara K Lipska, Francis J McMahon
Deep transcriptome sequencing of subgenual anterior cingulate cortex reveals cross-diagnostic and diagnosis-specific RNA expression changes in major psychiatric disorders. Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology 46 (7) (2021)
Joyce B Kang, Aparna Nathan, Kathryn Weinand, Fan Zhang, Nghia Millard, Laurie Rumker, D Branch Moody, Ilya Korsunsky, Soumya Raychaudhuri
Efficient and precise single-cell reference atlas mapping with Symphony. Nature communications 12 (1) (2021)