Saori Sakaue

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 56

Top Venues

Nature genetics

Nature communications

Nature reviews. Genetics

Communications biology

University of Tokyo (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

University of Tokyo Apr 01 2016

Japan

PHD :: Graduate School of Medicine

Publications

Saori Sakaue, Kathryn Weinand, Shakson Isaac, Kushal K Dey, Karthik A Jagadeesh, Masahiro Kanai, Gerald F M Watts, Zhu Zhu, null null, Michael B Brenner, Andrew McDavid, Laura T Donlin, Kevin Wei, Alkes L Price, Soumya Raychaudhuri
Tissue-specific enhancer-gene maps from multimodal single-cell data identify causal disease alleles. Nature genetics (2024)
Xiangrui Meng, Georgina Navoly, Olga Giannakopoulou, Daniel F Levey, Dora Koller, Gita A Pathak, Nastassja Koen, Kuang Lin, Mark James Adams, Miguel E Renteria, Yanzhe Feng, J Michael Gaziano, Dan J Stein, Heather J Zar, Megan L Campbell, David A van Heel, Bhavi Trivedi, Sarah Finer, Andrew McQuillin, Nick Bass, V Kartik Chundru, Hilary C Martin, Qin Qin Huang, Maria Valkovskaya, Chia-Yi Chu, Susan Kanjira, Po-Hsiu Kuo, Hsi-Chung Chen, Shih-Jen Tsai, Yu-Li Liu, Kenneth S Kendler, Roseann E Peterson, Na Cai, Yu Fang, Srijan Sen, Laura J Scott, Margit Burmeister, Ruth J F Loos, Michael H Preuss, Ky'Era V Actkins, Lea K Davis, Monica Uddin, Agaz H Wani, Derek E Wildman, Allison E Aiello, Robert J Ursano, Ronald C Kessler, Masahiro Kanai, Yukinori Okada, Saori Sakaue, Jill A Rabinowitz, Brion S Maher, George Uhl, William Eaton, Carlos S Cruz-Fuentes, Gabriela A Martínez-Levy, Adrian I Campos, Iona Y Millwood, Zhengming Chen, Liming Li, Sylvia Wassertheil-Smoller, Yunxuan Jiang, Chao Tian, Nicholas G Martin, Brittany L Mitchell, Enda M Byrne, Swapnil Awasthi, Jonathan R I Coleman, Stephan Ripke, null null, null null, null null, null null, null null, Tamar Sofer, Robin G Walters, Andrew M McIntosh, Renato Polimanti, Erin C Dunn, Murray B Stein, Joshua C Gray, Cathryn M Lewis, Karoline B Kuchenbaecker
Multi-ancestry genome-wide association study of major depression aids locus discovery, fine mapping, gene prioritization and causal inference. Nature genetics 56 (2) (2024)
Saori Sakaue, Kathryn Weinand, Shakson Isaac, Kushal K Dey, Karthik A Jagadeesh, Masahiro Kanai, Gerald F M Watts, Zhu Zhu, null null, Michael B Brenner, Andrew McDavid, Laura T Donlin, Kevin Wei, Alkes L Price, Soumya Raychaudhuri
Tissue-specific enhancer-gene maps from multimodal single-cell data identify causal disease alleles. Nature genetics 56 (4) (2024)
Saori Sakaue
SCENT defines non-coding disease mechanisms using single-cell multi-omics. Nature reviews. Genetics 25 (9) (2024)
Saori Sakaue, Kathryn Weinand, Shakson Isaac, Kushal K Dey, Karthik A Jagadeesh, Masahiro Kanai, Gerald F M Watts, Zhu Zhu, null null, Michael B Brenner, Andrew McDavid, Laura T Donlin, Kevin Wei, Alkes L Price, Soumya Raychaudhuri
Tissue-specific enhancer-gene maps from multimodal single-cell data identify causal disease alleles. Nature genetics 56 (4) (2024)
Chirag Krishna, Joshua Chiou, Saori Sakaue, Joyce B Kang, Stephen M Christensen, Isac Lee, Melis Atalar Aksit, Hye In Kim, David von Schack, Soumya Raychaudhuri, Daniel Ziemek, Xinli Hu
The influence of HLA genetic variation on plasma protein expression. Nature communications 15 (1) (2024)
Kathryn Weinand, Saori Sakaue, Aparna Nathan, Anna Helena Jonsson, Fan Zhang, Gerald F M Watts, Majd Al Suqri, Zhu Zhu, null null, Deepak A Rao, Jennifer H Anolik, Michael B Brenner, Laura T Donlin, Kevin Wei, Soumya Raychaudhuri
The chromatin landscape of pathogenic transcriptional cell states in rheumatoid arthritis. Nature communications 15 (1) (2024)
Garrett S Dunlap, Aaron Wagner, Nida Meednu, Ruoqiao Huiyi Wang, Fan Zhang, Jabea Cyril Ekabe, Anna Helena Jonsson, Kevin Wei, Saori Sakaue, Aparna Nathan, null null, Vivian P Bykerk, Laura T Donlin, Susan M Goodman, Gary S Firestein, David L Boyle, V Michael Holers, Larry W Moreland, Darren Tabechian, Costantino Pitzalis, Andrew Filer, Soumya Raychaudhuri, Michael B Brenner, Juilee Thakar, Andrew McDavid, Deepak A Rao, Jennifer H Anolik
Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium. Nature communications 15 (1) (2024)
Saori Sakaue, Kathryn Weinand, Shakson Isaac, Kushal K Dey, Karthik A Jagadeesh, Masahiro Kanai, Gerald F M Watts, Zhu Zhu, null null, Michael B Brenner, Andrew McDavid, Laura T Donlin, Kevin Wei, Alkes L Price, Soumya Raychaudhuri
Tissue-specific enhancer-gene maps from multimodal single-cell data identify causal disease alleles. Nature genetics 56 (4) (2024)
Saori Sakaue, Kathryn Weinand, Shakson Isaac, Kushal K Dey, Karthik A Jagadeesh, Masahiro Kanai, Gerald F M Watts, Zhu Zhu, null null, Michael B Brenner, Andrew McDavid, Laura T Donlin, Kevin Wei, Alkes L Price, Soumya Raychaudhuri
Tissue-specific enhancer-gene maps from multimodal single-cell data identify causal disease alleles. Nature genetics 56 (4) (2024)
Garrett S Dunlap, Aaron Wagner, Nida Meednu, Ruoqiao Huiyi Wang, Fan Zhang, Jabea Cyril Ekabe, Anna Helena Jonsson, Kevin Wei, Saori Sakaue, Aparna Nathan, null null, Vivian P Bykerk, Laura T Donlin, Susan M Goodman, Gary S Firestein, David L Boyle, V Michael Holers, Larry W Moreland, Darren Tabechian, Costantino Pitzalis, Andrew Filer, Soumya Raychaudhuri, Michael B Brenner, Juilee Thakar, Andrew McDavid, Deepak A Rao, Jennifer H Anolik
Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium. Nature communications 15 (1) (2024)
Kathryn Weinand, Saori Sakaue, Aparna Nathan, Anna Helena Jonsson, Fan Zhang, Gerald F M Watts, Majd Al Suqri, Zhu Zhu, null null, Deepak A Rao, Jennifer H Anolik, Michael B Brenner, Laura T Donlin, Kevin Wei, Soumya Raychaudhuri
The chromatin landscape of pathogenic transcriptional cell states in rheumatoid arthritis. Nature communications 15 (1) (2024)
Xiangrui Meng, Georgina Navoly, Olga Giannakopoulou, Daniel F Levey, Dora Koller, Gita A Pathak, Nastassja Koen, Kuang Lin, Mark James Adams, Miguel E Renteria, Yanzhe Feng, J Michael Gaziano, Dan J Stein, Heather J Zar, Megan L Campbell, David A van Heel, Bhavi Trivedi, Sarah Finer, Andrew McQuillin, Nick Bass, V Kartik Chundru, Hilary C Martin, Qin Qin Huang, Maria Valkovskaya, Chia-Yi Chu, Susan Kanjira, Po-Hsiu Kuo, Hsi-Chung Chen, Shih-Jen Tsai, Yu-Li Liu, Kenneth S Kendler, Roseann E Peterson, Na Cai, Yu Fang, Srijan Sen, Laura J Scott, Margit Burmeister, Ruth J F Loos, Michael H Preuss, Ky'Era V Actkins, Lea K Davis, Monica Uddin, Agaz H Wani, Derek E Wildman, Allison E Aiello, Robert J Ursano, Ronald C Kessler, Masahiro Kanai, Yukinori Okada, Saori Sakaue, Jill A Rabinowitz, Brion S Maher, George Uhl, William Eaton, Carlos S Cruz-Fuentes, Gabriela A Martínez-Levy, Adrian I Campos, Iona Y Millwood, Zhengming Chen, Liming Li, Sylvia Wassertheil-Smoller, Yunxuan Jiang, Chao Tian, Nicholas G Martin, Brittany L Mitchell, Enda M Byrne, Swapnil Awasthi, Jonathan R I Coleman, Stephan Ripke, null null, null null, null null, null null, null null, Tamar Sofer, Robin G Walters, Andrew M McIntosh, Renato Polimanti, Erin C Dunn, Murray B Stein, Joshua C Gray, Cathryn M Lewis, Karoline B Kuchenbaecker
Multi-ancestry genome-wide association study of major depression aids locus discovery, fine mapping, gene prioritization and causal inference. Nature genetics 56 (2) (2024)
Saori Sakaue
SCENT defines non-coding disease mechanisms using single-cell multi-omics. Nature reviews. Genetics (2024)
Garrett S Dunlap, Aaron Wagner, Nida Meednu, Ruoqiao Huiyi Wang, Fan Zhang, Jabea Cyril Ekabe, Anna Helena Jonsson, Kevin Wei, Saori Sakaue, Aparna Nathan, null null, Vivian P Bykerk, Laura T Donlin, Susan M Goodman, Gary S Firestein, David L Boyle, V Michael Holers, Larry W Moreland, Darren Tabechian, Costantino Pitzalis, Andrew Filer, Soumya Raychaudhuri, Michael B Brenner, Juilee Thakar, Andrew McDavid, Deepak A Rao, Jennifer H Anolik
Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium. Nature communications 15 (1) (2024)
Kathryn Weinand, Saori Sakaue, Aparna Nathan, Anna Helena Jonsson, Fan Zhang, Gerald F M Watts, Majd Al Suqri, Zhu Zhu, null null, Deepak A Rao, Jennifer H Anolik, Michael B Brenner, Laura T Donlin, Kevin Wei, Soumya Raychaudhuri
The chromatin landscape of pathogenic transcriptional cell states in rheumatoid arthritis. Nature communications 15 (1) (2024)
Saori Sakaue, Kathryn Weinand, Shakson Isaac, Kushal K Dey, Karthik A Jagadeesh, Masahiro Kanai, Gerald F M Watts, Zhu Zhu, null null, Michael B Brenner, Andrew McDavid, Laura T Donlin, Kevin Wei, Alkes L Price, Soumya Raychaudhuri
Tissue-specific enhancer-gene maps from multimodal single-cell data identify causal disease alleles. Nature genetics 56 (4) (2024)
Chirag Krishna, Joshua Chiou, Saori Sakaue, Joyce B Kang, Stephen M Christensen, Isac Lee, Melis Atalar Aksit, Hye In Kim, David von Schack, Soumya Raychaudhuri, Daniel Ziemek, Xinli Hu
The influence of HLA genetic variation on plasma protein expression. Nature communications 15 (1) (2024)
Kathryn Weinand, Saori Sakaue, Aparna Nathan, Anna Helena Jonsson, Fan Zhang, Gerald F M Watts, Majd Al Suqri, Zhu Zhu, null null, Deepak A Rao, Jennifer H Anolik, Michael B Brenner, Laura T Donlin, Kevin Wei, Soumya Raychaudhuri
The chromatin landscape of pathogenic transcriptional cell states in rheumatoid arthritis. Nature communications 15 (1) (2024)
Xiangrui Meng, Georgina Navoly, Olga Giannakopoulou, Daniel F Levey, Dora Koller, Gita A Pathak, Nastassja Koen, Kuang Lin, Mark James Adams, Miguel E Renteria, Yanzhe Feng, J Michael Gaziano, Dan J Stein, Heather J Zar, Megan L Campbell, David A van Heel, Bhavi Trivedi, Sarah Finer, Andrew McQuillin, Nick Bass, V Kartik Chundru, Hilary C Martin, Qin Qin Huang, Maria Valkovskaya, Chia-Yi Chu, Susan Kanjira, Po-Hsiu Kuo, Hsi-Chung Chen, Shih-Jen Tsai, Yu-Li Liu, Kenneth S Kendler, Roseann E Peterson, Na Cai, Yu Fang, Srijan Sen, Laura J Scott, Margit Burmeister, Ruth J F Loos, Michael H Preuss, Ky'Era V Actkins, Lea K Davis, Monica Uddin, Agaz H Wani, Derek E Wildman, Allison E Aiello, Robert J Ursano, Ronald C Kessler, Masahiro Kanai, Yukinori Okada, Saori Sakaue, Jill A Rabinowitz, Brion S Maher, George Uhl, William Eaton, Carlos S Cruz-Fuentes, Gabriela A Martínez-Levy, Adrian I Campos, Iona Y Millwood, Zhengming Chen, Liming Li, Sylvia Wassertheil-Smoller, Yunxuan Jiang, Chao Tian, Nicholas G Martin, Brittany L Mitchell, Enda M Byrne, Swapnil Awasthi, Jonathan R I Coleman, Stephan Ripke, null null, null null, null null, null null, null null, Tamar Sofer, Robin G Walters, Andrew M McIntosh, Renato Polimanti, Erin C Dunn, Murray B Stein, Joshua C Gray, Cathryn M Lewis, Karoline B Kuchenbaecker
Multi-ancestry genome-wide association study of major depression aids locus discovery, fine mapping, gene prioritization and causal inference. Nature genetics 56 (2) (2024)
Garrett S Dunlap, Aaron Wagner, Nida Meednu, Ruoqiao Huiyi Wang, Fan Zhang, Jabea Cyril Ekabe, Anna Helena Jonsson, Kevin Wei, Saori Sakaue, Aparna Nathan, null null, Vivian P Bykerk, Laura T Donlin, Susan M Goodman, Gary S Firestein, David L Boyle, V Michael Holers, Larry W Moreland, Darren Tabechian, Costantino Pitzalis, Andrew Filer, Soumya Raychaudhuri, Michael B Brenner, Juilee Thakar, Andrew McDavid, Deepak A Rao, Jennifer H Anolik
Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium. Nature communications 15 (1) (2024)
Chirag Krishna, Joshua Chiou, Saori Sakaue, Joyce B Kang, Stephen M Christensen, Isac Lee, Melis Atalar Aksit, Hye In Kim, David von Schack, Soumya Raychaudhuri, Daniel Ziemek, Xinli Hu
The influence of HLA genetic variation on plasma protein expression. Nature communications 15 (1) (2024)
Saori Sakaue
SCENT defines non-coding disease mechanisms using single-cell multi-omics. Nature reviews. Genetics 25 (9) (2024)
Xiangrui Meng, Georgina Navoly, Olga Giannakopoulou, Daniel F Levey, Dora Koller, Gita A Pathak, Nastassja Koen, Kuang Lin, Mark James Adams, Miguel E Renteria, Yanzhe Feng, J Michael Gaziano, Dan J Stein, Heather J Zar, Megan L Campbell, David A van Heel, Bhavi Trivedi, Sarah Finer, Andrew McQuillin, Nick Bass, V Kartik Chundru, Hilary C Martin, Qin Qin Huang, Maria Valkovskaya, Chia-Yi Chu, Susan Kanjira, Po-Hsiu Kuo, Hsi-Chung Chen, Shih-Jen Tsai, Yu-Li Liu, Kenneth S Kendler, Roseann E Peterson, Na Cai, Yu Fang, Srijan Sen, Laura J Scott, Margit Burmeister, Ruth J F Loos, Michael H Preuss, Ky'Era V Actkins, Lea K Davis, Monica Uddin, Agaz H Wani, Derek E Wildman, Allison E Aiello, Robert J Ursano, Ronald C Kessler, Masahiro Kanai, Yukinori Okada, Saori Sakaue, Jill A Rabinowitz, Brion S Maher, George Uhl, William Eaton, Carlos S Cruz-Fuentes, Gabriela A Martínez-Levy, Adrian I Campos, Iona Y Millwood, Zhengming Chen, Liming Li, Sylvia Wassertheil-Smoller, Yunxuan Jiang, Chao Tian, Nicholas G Martin, Brittany L Mitchell, Enda M Byrne, Swapnil Awasthi, Jonathan R I Coleman, Stephan Ripke, null null, null null, null null, null null, null null, Tamar Sofer, Robin G Walters, Andrew M McIntosh, Renato Polimanti, Erin C Dunn, Murray B Stein, Joshua C Gray, Cathryn M Lewis, Karoline B Kuchenbaecker
Multi-ancestry genome-wide association study of major depression aids locus discovery, fine mapping, gene prioritization and causal inference. Nature genetics 56 (2) (2024)
Saori Sakaue
SCENT defines non-coding disease mechanisms using single-cell multi-omics. Nature reviews. Genetics 25 (9) (2024)
Xiangrui Meng, Georgina Navoly, Olga Giannakopoulou, Daniel F Levey, Dora Koller, Gita A Pathak, Nastassja Koen, Kuang Lin, Mark James Adams, Miguel E Renteria, Yanzhe Feng, J Michael Gaziano, Dan J Stein, Heather J Zar, Megan L Campbell, David A van Heel, Bhavi Trivedi, Sarah Finer, Andrew McQuillin, Nick Bass, V Kartik Chundru, Hilary C Martin, Qin Qin Huang, Maria Valkovskaya, Chia-Yi Chu, Susan Kanjira, Po-Hsiu Kuo, Hsi-Chung Chen, Shih-Jen Tsai, Yu-Li Liu, Kenneth S Kendler, Roseann E Peterson, Na Cai, Yu Fang, Srijan Sen, Laura J Scott, Margit Burmeister, Ruth J F Loos, Michael H Preuss, Ky'Era V Actkins, Lea K Davis, Monica Uddin, Agaz H Wani, Derek E Wildman, Allison E Aiello, Robert J Ursano, Ronald C Kessler, Masahiro Kanai, Yukinori Okada, Saori Sakaue, Jill A Rabinowitz, Brion S Maher, George Uhl, William Eaton, Carlos S Cruz-Fuentes, Gabriela A Martínez-Levy, Adrian I Campos, Iona Y Millwood, Zhengming Chen, Liming Li, Sylvia Wassertheil-Smoller, Yunxuan Jiang, Chao Tian, Nicholas G Martin, Brittany L Mitchell, Enda M Byrne, Swapnil Awasthi, Jonathan R I Coleman, Stephan Ripke, null null, null null, null null, null null, null null, Tamar Sofer, Robin G Walters, Andrew M McIntosh, Renato Polimanti, Erin C Dunn, Murray B Stein, Joshua C Gray, Cathryn M Lewis, Karoline B Kuchenbaecker
Multi-ancestry genome-wide association study of major depression aids locus discovery, fine mapping, gene prioritization and causal inference. Nature genetics 56 (2) (2024)
Xiangrui Meng, Georgina Navoly, Olga Giannakopoulou, Daniel F Levey, Dora Koller, Gita A Pathak, Nastassja Koen, Kuang Lin, Mark James Adams, Miguel E Renteria, Yanzhe Feng, J Michael Gaziano, Dan J Stein, Heather J Zar, Megan L Campbell, David A van Heel, Bhavi Trivedi, Sarah Finer, Andrew McQuillin, Nick Bass, V Kartik Chundru, Hilary C Martin, Qin Qin Huang, Maria Valkovskaya, Chia-Yi Chu, Susan Kanjira, Po-Hsiu Kuo, Hsi-Chung Chen, Shih-Jen Tsai, Yu-Li Liu, Kenneth S Kendler, Roseann E Peterson, Na Cai, Yu Fang, Srijan Sen, Laura J Scott, Margit Burmeister, Ruth J F Loos, Michael H Preuss, Ky'Era V Actkins, Lea K Davis, Monica Uddin, Agaz H Wani, Derek E Wildman, Allison E Aiello, Robert J Ursano, Ronald C Kessler, Masahiro Kanai, Yukinori Okada, Saori Sakaue, Jill A Rabinowitz, Brion S Maher, George Uhl, William Eaton, Carlos S Cruz-Fuentes, Gabriela A Martínez-Levy, Adrian I Campos, Iona Y Millwood, Zhengming Chen, Liming Li, Sylvia Wassertheil-Smoller, Yunxuan Jiang, Chao Tian, Nicholas G Martin, Brittany L Mitchell, Enda M Byrne, Swapnil Awasthi, Jonathan R I Coleman, Stephan Ripke, null null, null null, null null, null null, null null, Tamar Sofer, Robin G Walters, Andrew M McIntosh, Renato Polimanti, Erin C Dunn, Murray B Stein, Joshua C Gray, Cathryn M Lewis, Karoline B Kuchenbaecker
Multi-ancestry genome-wide association study of major depression aids locus discovery, fine mapping, gene prioritization and causal inference. Nature genetics 56 (2) (2024)
Xiangrui Meng, Georgina Navoly, Olga Giannakopoulou, Daniel F Levey, Dora Koller, Gita A Pathak, Nastassja Koen, Kuang Lin, Mark James Adams, Miguel E Renteria, Yanzhe Feng, J Michael Gaziano, Dan J Stein, Heather J Zar, Megan L Campbell, David A van Heel, Bhavi Trivedi, Sarah Finer, Andrew McQuillin, Nick Bass, V Kartik Chundru, Hilary C Martin, Qin Qin Huang, Maria Valkovskaya, Chia-Yi Chu, Susan Kanjira, Po-Hsiu Kuo, Hsi-Chung Chen, Shih-Jen Tsai, Yu-Li Liu, Kenneth S Kendler, Roseann E Peterson, Na Cai, Yu Fang, Srijan Sen, Laura J Scott, Margit Burmeister, Ruth J F Loos, Michael H Preuss, Ky'Era V Actkins, Lea K Davis, Monica Uddin, Agaz H Wani, Derek E Wildman, Allison E Aiello, Robert J Ursano, Ronald C Kessler, Masahiro Kanai, Yukinori Okada, Saori Sakaue, Jill A Rabinowitz, Brion S Maher, George Uhl, William Eaton, Carlos S Cruz-Fuentes, Gabriela A Martínez-Levy, Adrian I Campos, Iona Y Millwood, Zhengming Chen, Liming Li, Sylvia Wassertheil-Smoller, Yunxuan Jiang, Chao Tian, Nicholas G Martin, Brittany L Mitchell, Enda M Byrne, Swapnil Awasthi, Jonathan R I Coleman, Stephan Ripke, null null, null null, null null, null null, null null, Tamar Sofer, Robin G Walters, Andrew M McIntosh, Renato Polimanti, Erin C Dunn, Murray B Stein, Joshua C Gray, Cathryn M Lewis, Karoline B Kuchenbaecker
Multi-ancestry genome-wide association study of major depression aids locus discovery, fine mapping, gene prioritization and causal inference. Nature genetics (2024)
Saori Sakaue
SCENT defines non-coding disease mechanisms using single-cell multi-omics. Nature reviews. Genetics (2024)
Garrett S Dunlap, Aaron Wagner, Nida Meednu, Ruoqiao Huiyi Wang, Fan Zhang, Jabea Cyril Ekabe, Anna Helena Jonsson, Kevin Wei, Saori Sakaue, Aparna Nathan, null null, Vivian P Bykerk, Laura T Donlin, Susan M Goodman, Gary S Firestein, David L Boyle, V Michael Holers, Larry W Moreland, Darren Tabechian, Costantino Pitzalis, Andrew Filer, Soumya Raychaudhuri, Michael B Brenner, Juilee Thakar, Andrew McDavid, Deepak A Rao, Jennifer H Anolik
Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium. Nature communications 15 (1) (2024)
Saori Sakaue, Kathryn Weinand, Shakson Isaac, Kushal K Dey, Karthik A Jagadeesh, Masahiro Kanai, Gerald F M Watts, Zhu Zhu, null null, Michael B Brenner, Andrew McDavid, Laura T Donlin, Kevin Wei, Alkes L Price, Soumya Raychaudhuri
Tissue-specific enhancer-gene maps from multimodal single-cell data identify causal disease alleles. Nature genetics 56 (4) (2024)
Garrett S Dunlap, Aaron Wagner, Nida Meednu, Ruoqiao Huiyi Wang, Fan Zhang, Jabea Cyril Ekabe, Anna Helena Jonsson, Kevin Wei, Saori Sakaue, Aparna Nathan, null null, Vivian P Bykerk, Laura T Donlin, Susan M Goodman, Gary S Firestein, David L Boyle, V Michael Holers, Larry W Moreland, Darren Tabechian, Costantino Pitzalis, Andrew Filer, Soumya Raychaudhuri, Michael B Brenner, Juilee Thakar, Andrew McDavid, Deepak A Rao, Jennifer H Anolik
Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium. Nature communications 15 (1) (2024)
Xiangrui Meng, Georgina Navoly, Olga Giannakopoulou, Daniel F Levey, Dora Koller, Gita A Pathak, Nastassja Koen, Kuang Lin, Mark James Adams, Miguel E Renteria, Yanzhe Feng, J Michael Gaziano, Dan J Stein, Heather J Zar, Megan L Campbell, David A van Heel, Bhavi Trivedi, Sarah Finer, Andrew McQuillin, Nick Bass, V Kartik Chundru, Hilary C Martin, Qin Qin Huang, Maria Valkovskaya, Chia-Yi Chu, Susan Kanjira, Po-Hsiu Kuo, Hsi-Chung Chen, Shih-Jen Tsai, Yu-Li Liu, Kenneth S Kendler, Roseann E Peterson, Na Cai, Yu Fang, Srijan Sen, Laura J Scott, Margit Burmeister, Ruth J F Loos, Michael H Preuss, Ky'Era V Actkins, Lea K Davis, Monica Uddin, Agaz H Wani, Derek E Wildman, Allison E Aiello, Robert J Ursano, Ronald C Kessler, Masahiro Kanai, Yukinori Okada, Saori Sakaue, Jill A Rabinowitz, Brion S Maher, George Uhl, William Eaton, Carlos S Cruz-Fuentes, Gabriela A Martínez-Levy, Adrian I Campos, Iona Y Millwood, Zhengming Chen, Liming Li, Sylvia Wassertheil-Smoller, Yunxuan Jiang, Chao Tian, Nicholas G Martin, Brittany L Mitchell, Enda M Byrne, Swapnil Awasthi, Jonathan R I Coleman, Stephan Ripke, null null, null null, null null, null null, null null, Tamar Sofer, Robin G Walters, Andrew M McIntosh, Renato Polimanti, Erin C Dunn, Murray B Stein, Joshua C Gray, Cathryn M Lewis, Karoline B Kuchenbaecker
Multi-ancestry genome-wide association study of major depression aids locus discovery, fine mapping, gene prioritization and causal inference. Nature genetics (2024)
Masato Akiyama, Saori Sakaue, Atsushi Takahashi, Kazuyoshi Ishigaki, Makoto Hirata, Koichi Matsuda, Yukihide Momozawa, Yukinori Okada, Toshiharu Ninomiya, null null, Chikashi C Terao, Yoshinori Murakami, Michiaki Kubo, Yoichiro Kamatani
Genome-wide association study reveals BET1L associated with survival time in the 137,693 Japanese individuals. Communications biology 6 (1) (2023)
Masato Akiyama, Saori Sakaue, Atsushi Takahashi, Kazuyoshi Ishigaki, Makoto Hirata, Koichi Matsuda, Yukihide Momozawa, Yukinori Okada, Toshiharu Ninomiya, null null, Chikashi C Terao, Yoshinori Murakami, Michiaki Kubo, Yoichiro Kamatani
Genome-wide association study reveals BET1L associated with survival time in the 137,693 Japanese individuals. Communications biology 6 (1) (2023)
Anika Gupta, Kathryn Weinand, Aparna Nathan, Saori Sakaue, Martin Jinye Zhang, null null, Laura Donlin, Kevin Wei, Alkes L Price, Tiffany Amariuta, Soumya Raychaudhuri
Dynamic regulatory elements in single-cell multimodal data implicate key immune cell states enriched for autoimmune disease heritability. Nature genetics (2023)
Saori Sakaue, Saisriram Gurajala, Michelle Curtis, Yang Luo, Wanson Choi, Kazuyoshi Ishigaki, Joyce B Kang, Laurie Rumker, Aaron J Deutsch, Sebastian Schönherr, Lukas Forer, Jonathon LeFaive, Christian Fuchsberger, Buhm Han, Tobias L Lenz, Paul I W de Bakker, Yukinori Okada, Albert V Smith, Soumya Raychaudhuri
Tutorial: a statistical genetics guide to identifying HLA alleles driving complex disease. Nature protocols (2023)
Joyce B Kang, Amber Z Shen, Saori Sakaue, Yang Luo, Saisriram Gurajala, Aparna Nathan, Laurie Rumker, Vitor R C Aguiar, Cristian Valencia, Kaitlyn Lagattuta, Fan Zhang, Anna Helena Jonsson, Seyhan Yazar, Jose Alquicira Hernandez, Hamed Khalili, Ashwin N Ananthakrishnan, Karthik Jagadeesh, Kushal Dey, null null, Mark J Daly, Ramnik J Xavier, Laura T Donlin, Jennifer H Anolik, Joseph E Powell, Deepak A Rao, Michael B Brenner, Maria Gutierrez-Arcelus, Soumya Raychaudhuri
Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution. medRxiv : the preprint server for health sciences (2023)
Masato Akiyama, Saori Sakaue, Atsushi Takahashi, Kazuyoshi Ishigaki, Makoto Hirata, Koichi Matsuda, Yukihide Momozawa, Yukinori Okada, Toshiharu Ninomiya, null null, Chikashi C Terao, Yoshinori Murakami, Michiaki Kubo, Yoichiro Kamatani
Genome-wide association study reveals BET1L associated with survival time in the 137,693 Japanese individuals. Communications biology 6 (1) (2023)
Masato Akiyama, Saori Sakaue, Atsushi Takahashi, Kazuyoshi Ishigaki, Makoto Hirata, Koichi Matsuda, Yukihide Momozawa, Yukinori Okada, Toshiharu Ninomiya, null null, Chikashi C Terao, Yoshinori Murakami, Michiaki Kubo, Yoichiro Kamatani
Genome-wide association study reveals BET1L associated with survival time in the 137,693 Japanese individuals. Communications biology 6 (1) (2023)
Martin Jinye Zhang, Kangcheng Hou, Kushal K Dey, Saori Sakaue, Karthik A Jagadeesh, Kathryn Weinand, Aris Taychameekiatchai, Poorvi Rao, Angela Oliveira Pisco, James Zou, Bruce Wang, Michael J Gandal, Soumya Raychaudhuri, Bogdan Pasaniuc, Alkes L Price
Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data. Nature genetics 54 (10) (2022)
Paul R H J Timmers, Evgeny S Tiys, Saori Sakaue, Masato Akiyama, Tuomo Tapio Johannes Kiiskinen, Wei Zhou, Shih-Jen Hwang, Chen Yao, null null, null null, Joris Deelen, Daniel Levy, Andrea Ganna, Yoichiro Kamatani, Yukinori Okada, Peter K Joshi, James F Wilson, Yakov A Tsepilov
Mendelian randomization of genetically independent aging phenotypes identifies LPA and VCAM1 as biological targets for human aging. Nature aging 2 (1) (2022)
Kazuyoshi Ishigaki, Saori Sakaue, Chikashi C Terao, Yang Luo, Kyuto Sonehara, Kensuke Yamaguchi, Tiffany Amariuta, Chun Lai Too, Vincent A Laufer, Ian C Scott, Sebastien Viatte, Meiko Takahashi, Koichiro Ohmura, Akira Murasawa, Motomu Hashimoto, Hiromu Ito, Mohammed Hammoudeh, Samar Al Emadi, Basel K Masri, Hussein Halabi, Humeira Badsha, Imad W Uthman, Xin Wu, Li Lin, Ting Li, Darren Plant, Richard B Warren, Gisela Orozco, Suzanne M M Verstappen, John David Bowes, Alexander J MacGregor, Suguru Honda, Masaru Koido, Kohei Tomizuka, Yoichiro Kamatani, Hiroaki Tanaka, Eiichi Tanaka, Akari Suzuki, Yuichi Maeda, Kenichi Yamamoto, Satoru Miyawaki, Gang Xie, Jinyi Zhang, Christopher Ian Amos, Edward Keystone, Gertjan Wolbink, Irene van der Horst-Bruinsma, Jing Cui, Katherine P Liao, Robert J Carroll, Hye-Soon Lee, So-Young Bang, Katherine A Siminovitch, Niek De Vries, Lars Alfredsson, Solbritt Rantapää Dahlqvist, Elizabeth W Karlson, Sang-Cheol Bae, Robert P Kimberly, Jeffrey C Edberg, Xavier Mariette, Thomas Wj Huizinga, Philippe Dieude, Matthias Schneider, Martin Kerick, Joshua C Denny, null null, Koichi Matsuda, Keitaro Matsuo, Tsuneyo Mimori, Fumihiko Matsuda, Keishi Fujio, Yoshiya Tanaka, Atsushi Kumanogoh, Matthew Traylor, Cathryn M Lewis, Stephen Eyre, Huji Xu, Richa Saxena, Thurayya Arayssi, Yuta Kochi, Katsunori Ikari, Masayoshi Harigai, Peter K Gregersen, Kazuhiko Yamamoto, S Louis Bridges, Leonid Padyukov, Javier Martín, Lars Klareskog, Yukinori Okada, Soumya Raychaudhuri
Multi-ancestry genome-wide association analyses identify novel genetic mechanisms in rheumatoid arthritis. Nature genetics 54 (11) (2022)
Paul R H J Timmers, Evgeny S Tiys, Saori Sakaue, Masato Akiyama, Tuomo Tapio Johannes Kiiskinen, Wei Zhou, Shih-Jen Hwang, Chen Yao, null null, null null, Joris Deelen, Daniel Levy, Andrea Ganna, Yoichiro Kamatani, Yukinori Okada, Peter K Joshi, James F Wilson, Yakov A Tsepilov
Mendelian randomization of genetically independent aging phenotypes identifies LPA and VCAM1 as biological targets for human aging. Nature aging 2 (1) (2022)
Paul R H J Timmers, Evgeny S Tiys, Saori Sakaue, Masato Akiyama, Tuomo Tapio Johannes Kiiskinen, Wei Zhou, Shih-Jen Hwang, Chen Yao, null null, null null, Joris Deelen, Daniel Levy, Andrea Ganna, Yoichiro Kamatani, Yukinori Okada, Peter K Joshi, James F Wilson, Yakov A Tsepilov
Mendelian randomization of genetically independent aging phenotypes identifies LPA and VCAM1 as biological targets for human aging. Nature aging 2 (1) (2022)
Paul R H J Timmers, Evgeny S Tiys, Saori Sakaue, Masato Akiyama, Tuomo Tapio Johannes Kiiskinen, Wei Zhou, Shih-Jen Hwang, Chen Yao, null null, null null, Joris Deelen, Daniel Levy, Andrea Ganna, Yoichiro Kamatani, Yukinori Okada, Peter K Joshi, James F Wilson, Yakov A Tsepilov
Mendelian randomization of genetically independent aging phenotypes identifies LPA and VCAM1 as biological targets for human aging. Nature aging 2 (1) (2022)
Saori Sakaue, Etsuro Yamaguchi, Yoshikazu Inoue, Meiko Takahashi, Jun Hirata, Ken Suzuki, Satoru Ito, Toru Arai, Masaki Hirose, Yoshinori Tanino, Takefumi Nikaido, Toshio Ichiwata, Shinya Ohkouchi, Taizou Hirano, Toshinori Takada, Satoru Miyawaki, Shogo Dofuku, Yuichi Maeda, Takuro Nii, Toshihiro Kishikawa, Kotaro Ogawa, Tatsuo Masuda, Kenichi Yamamoto, Kyuto Sonehara, Ryushi Tazawa, Konosuke Morimoto, Masahiro Takaki, Satoshi Konno, Masaru Suzuki, Keisuke Tomii, Atsushi Nakagawa, Tomohiro Handa, Kiminobu Tanizawa, Haruyuki Ishii, Manabu Ishida, Toshiyuki Kato, Naoya Takeda, Koshi Yokomura, Takashi Matsui, Masaki Watanabe, Hiromasa Inoue, Kazuyoshi Imaizumi, Yasuhiro Goto, Hiroshi Kida, Tomoyuki Fujisawa, Takafumi Suda, Takashi Yamada, Yasuomi Satake, Hidenori Ibata, Nobuyuki Hizawa, Hideki Mochizuki, Atsushi Kumanogoh, Fumihiko Matsuda, Koh Nakata, Tomomitsu Hirota, Mayumi Tamari, Yukinori Okada
Genetic determinants of risk in autoimmune pulmonary alveolar proteinosis. Nature communications 12 (1) (2021)
Yang Luo, Masahiro Kanai, Wanson Choi, Xinyi Li, Saori Sakaue, Kenichi Yamamoto, Kotaro Ogawa, Maria Gutierrez-Arcelus, Peter K Gregersen, Philip E Stuart, James T Elder, Lukas Forer, Sebastian Schönherr, Christian Fuchsberger, Albert Vernon Smith, Jacques Fellay, Mary N Carrington, David W Haas, Xiuqing Guo, Nicholette D D Allred, Yii-Der Ida Chen, Jerome I Rotter, Kent D Taylor, Stephen S Rich, Adolfo Correa, James G Wilson, Sekar Kathiresan, Michael H Cho, Andres Metspalu, Tõnu Esko, Yukinori Okada, Buhm Han, null null, Paul J McLaren, Soumya Raychaudhuri
A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response. Nature genetics 53 (10) (2021)
Saori Sakaue, Masahiro Kanai, Yosuke Tanigawa, Juha Karjalainen, Mitja Kurki, Seizo Koshiba, Akira Narita, Takahiro Konuma, Kenichi Yamamoto, Masato Akiyama, Kazuyoshi Ishigaki, Akari Suzuki, Ken Suzuki, Wataru Obara, Ken Yamaji, Kazuhisa Takahashi, Satoshi Asai, Yasuo Takahashi, Takao Suzuki, Nobuaki Shinozaki, Hiroki Yamaguchi, Shiro Minami, Shigeo Murayama, Kozo Yoshimori, Satoshi Nagayama, Daisuke Obata, Masahiko Higashiyama, Akihide Masumoto, Yukihiro Koretsune, null null, Shefali S Verma, Chikashi C Terao, Toshimasa Yamauchi, Issei Komuro, Takashi Kadowaki, Gen Tamiya, Masayuki Yamamoto, Yusuke Nakamura, Michiaki Kubo, Yoshinori Murakami, Kazuhiko Yamamoto, Yoichiro Kamatani, Aarno Palotie, Manuel A Rivas, Mark J Daly, Koichi Matsuda, Yukinori Okada
A cross-population atlas of genetic associations for 220 human phenotypes. Nature genetics 53 (10) (2021)
Muralidharan Sargurupremraj, Hideaki Suzuki, Xueqiu Jian, Chloe Sarnowski, Tavia E Evans, Joshua C Bis, Gudny Eiriksdottir, Saori Sakaue, Natalie Terzikhan, Mohamad Habes, Wei Zhao, Nicola J Armstrong, Edith Hofer, Lisa R Yanek, Saskia P Hagenaars, Rajan B Kumar, Erik B van den Akker, Rebekah E McWhirter, Stella Trompet, Aniket Mishra, Yasaman Saba, Claudia L Satizabal, Gregory Beaudet, Laurent Petit, Ami Tsuchida, Laure Zago, Sabrina Schilling, Sigurdur Sigurdsson, Rebecca F Gottesman, Cora E Lewis, Neelum T Aggarwal, Oscar L Lopez, Jennifer A Smith, Maria C Valdés Hernández, Jeroen van der Grond, Margaret J Wright, Maria J Knol, Marcus Dörr, Russell J Thomson, Constance Bordes, Quentin Le Grand, Marie-Gabrielle Duperron, Albert Vernon Smith, David S Knopman, Pamela J Schreiner, Denis A Evans, Jerome I Rotter, Alexa S Beiser, Susana Muñoz Maniega, Marian Beekman, Julian N Trollor, David J Stott, Meike W Vernooij, Katharina Wittfeld, Wiro J Niessen, Aicha Soumaré, Eric Boerwinkle, Stephen Sidney, Stephen T Turner, Gail Davies, Anbupalam Thalamuthu, Linus Völker, Mark A van Buchem, R Nick Bryan, Josée Dupuis, Mark E Bastin, David Ames, Alexander Teumer, Phillippe Amouyel, John B Kwok, Robin Bülow, Ian J Deary, Peter R Schofield, Henry Brodaty, Jiyang Jiang, Yasuharu Tabara, Kazuya Setoh, Susumu Miyamoto, Kazumichi Yoshida, Manabu Nagata, Yoichiro Kamatani, Fumihiko Matsuda, Bruce M Psaty, David A Bennett, Philip Lawrence De Jager, Thomas H Mosley, Perminder Singh Sachdev, Reinhold Schmidt, Helen R Warren, Evangelos Evangelou, David-Alexandre Trégouët, null null, null null, Mohammad Arfan Ikram, Wei Wen, Charles DeCarli, Velandai K Srikanth, Johan Wouter Jukema, Pieternella Eline Slagboom, Sharon L R Kardia, Yukinori Okada, Bernard Mazoyer, Joanna Marguerite Wardlaw, Paul A Nyquist, Karen A Mather, Hans Jörgen Grabe, Helena Schmidt, Cornelia M Van Duijn, Vilmundur G Gudnason, William T Longstreth, Lenore J Launer, Mark Lathrop, Sudha Seshadri, Christophe Tzourio, Hieab H H Adams, Paul M Matthews, Myriam Fornage, Stephanie Debette
Cerebral small vessel disease genomics and its implications across the lifespan. Nature communications 11 (1) (2020)
Kazuyoshi Ishigaki, Masato Akiyama, Masahiro Kanai, Atsushi Takahashi, Eiryo Kawakami, Hiroki Sugishita, Saori Sakaue, Nana Matoba, Siew-Kee Low, Yukinori Okada, Chikashi C Terao, Tiffany Amariuta, Steven Gazal, Yuta Kochi, Momoko Horikoshi, Ken Suzuki, Kaoru Ito, Satoshi Koyama, Kouichi Ozaki, Shumpei Niida, Yasushi Sakata, Yasuhiko Sakata, Takashi Kohno, Kouya Shiraishi, Yukihide Momozawa, Makoto Hirata, Koichi Matsuda, Kyung Sue Hong, Masashi Ikeda, Shiro Ikegawa, Ikuyo Kou, Toshihiro Tanaka, Hidewaki Nakagawa, Akari Suzuki, Tomomitsu Hirota, Mayumi Tamari, Kazuaki Chayama, Daiki Miki, Masaki Mori, Satoshi Nagayama, Yataro Daigo, Yoshio Miki, Toyomasa Katagiri, Osamu Ogawa, Wataru Obara, Hidemi Ito, Teruhiko Yoshida, Issei Imoto, Takashi Takahashi, Chizu Tanikawa, Takao Suzuki, Nobuaki Sinozaki, Shiro Minami, Hiroki Yamaguchi, Satoshi Asai, Yasuo Takahashi, Ken Yamaji, Kazuhisa Takahashi, Tomoaki Fujioka, Ryo Takata, Hideki Yanai, Akihide Masumoto, Yukihiro Koretsune, Hiromu Kutsumi, Masahiko Higashiyama, Shigeo Murayama, Naoko Minegishi, Kichiya Suzuki, Kozo Tanno, Atsushi Shimizu, Taiki Yamaji, Motoki Iwasaki, Norie Sawada, Hirokazu Uemura, Keitaro Tanaka, Mariko Naito, Makoto Sasaki, Kenji Wakai, Shoichiro Tsugane, Masayuki Yamamoto, Kazuhiko Yamamoto, Yoshinori Murakami, Yusuke Nakamura, Soumya Raychaudhuri, Johji Inazawa, Toshimasa Yamauchi, Takashi Kadowaki, Michiaki Kubo, Yoichiro Kamatani
Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases. Nature genetics 52 (7) (2020)
Saori Sakaue, Jun Hirata, Masahiro Kanai, Ken Suzuki, Masato Akiyama, Chun Lai Too, Thurayya Arayssi, Mohammed Hammoudeh, Samar Al Emadi, Basel K Masri, Hussein Halabi, Humeira Badsha, Imad W Uthman, Richa Saxena, Leonid Padyukov, Makoto Hirata, Koichi Matsuda, Yoshinori Murakami, Yoichiro Kamatani, Yukinori Okada
Dimensionality reduction reveals fine-scale structure in the Japanese population with consequences for polygenic risk prediction. Nature communications 11 (1) (2020)
Saori Sakaue, Masahiro Kanai, Juha Karjalainen, Masato Akiyama, Mitja Kurki, Nana Matoba, Atsushi Takahashi, Makoto Hirata, Michiaki Kubo, Koichi Matsuda, Yoshinori Murakami, null null, Mark J Daly, Yoichiro Kamatani, Yukinori Okada
Trans-biobank analysis with 676,000 individuals elucidates the association of polygenic risk scores of complex traits with human lifespan. Nature medicine 26 (4) (2020)
Kenichi Yamamoto, Saori Sakaue, Koichi Matsuda, Yoshinori Murakami, Yoichiro Kamatani, Keiichi Ozono, Yukihide Momozawa, Yukinori Okada
Genetic and phenotypic landscape of the mitochondrial genome in the Japanese population. Communications biology 3 (1) (2020)
Jun Hirata, Kazuyoshi Hosomichi, Saori Sakaue, Masahiro Kanai, Hirofumi Nakaoka, Kazuyoshi Ishigaki, Ken Suzuki, Masato Akiyama, Toshihiro Kishikawa, Kotaro Ogawa, Tatsuo Masuda, Kenichi Yamamoto, Makoto Hirata, Koichi Matsuda, Yukihide Momozawa, Ituro Inoue, Michiaki Kubo, Yoichiro Kamatani, Yukinori Okada
Genetic and phenotypic landscape of the major histocompatibilty complex region in the Japanese population. Nature genetics 51 (3) (2019)
Dmitry Shungin, Simown Howarth, Kimon Divaris, Cary S Agler, Yoichiro Kamatani, Myoung Keun Lee, Kelsey Grinde, George Hindy, Viivi Alaraudanjoki, Paula Pesonen, Alexander Teumer, Birte Holtfreter, Saori Sakaue, Jun Hirata, Yau-Hua Yu, Paul M Ridker, Franco Giulianini, Daniel I Chasman, Patrik K E Magnusson, Takeaki Sudo, Yukinori Okada, Linus Völker, Thomas Kocher, Vuokko Anttonen, Marja-Liisa Laitala, Marju Orho-Melander, Tamar Sofer, John R Shaffer, Alexandre Vieira, Mary L Marazita, Michiaki Kubo, Yasushi Furuichi, Kari E North, Steve Offenbacher, Erik Ingelsson, Paul W Franks, Nicholas John Timpson, Ingegerd Johansson
Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data. Nature communications 10 (1) (2019)

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Saori Sakaue