Bas Oude Munnink (Bas B Oude Munnink)

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 19

Top Topics

Antimicrobial Resistance

Respiratory Syndrome Coronavirus

Loop Mediated Isothermal Amplification

Top Venues

Nature medicine

Nature communications

Journal of medical virology

Science immunology

This page only lists publications with an associated author ORCID identifier.

Publications

Lihong Liu, Mikhayil Hakhverdyan, Per Wallgren, Kevin Vanneste, Qiang Fu, Pierrick Lucas, Yannick Blanchard, Miranda de Graaf, Bas Oude Munnink, Sander van Boheemen, Alex Bossers, Marcel Hulst, Steven Van Borm
An interlaboratory proficiency test using metagenomic sequencing as a diagnostic tool for the detection of RNA viruses in swine fecal material. Microbiology spectrum (2024)
Leonard Schuele, Marjan Boter, David F Nieuwenhuijse, Hannelore Götz, Ewout Fanoy, Henry de Vries, Bruno Vieyra, Roisin Bavalia, Elske Hoornenborg, Richard Molenkamp, Marcel Jonges, Anton van den Ouden, Margarida Simões, Mariken van den Lubben, Marion Koopmans, Matthijs R A Welkers, Bas Oude Munnink
Circulation, viral diversity and genomic rearrangement in mpox virus in the Netherlands during the 2022 outbreak and beyond. Journal of medical virology 96 (1) (2024)
Leonard Schuele, Marjan Boter, David F Nieuwenhuijse, Hannelore Götz, Ewout Fanoy, Henry de Vries, Bruno Vieyra, Roisin Bavalia, Elske Hoornenborg, Richard Molenkamp, Marcel Jonges, Anton van den Ouden, Margarida Simões, Mariken van den Lubben, Marion Koopmans, Matthijs R A Welkers, Bas Oude Munnink
Circulation, viral diversity and genomic rearrangement in mpox virus in the Netherlands during the 2022 outbreak and beyond. Journal of medical virology 96 (1) (2024)
Lorenzo Subissi, James Richard Otieno, Nathalie Worp, Homa Attar Cohen, Bas Oude Munnink, Laith Jamal Abu-Raddad, Erik Alm, Amal Barakat, Wendy S Barclay, Jinal N Bhiman, Leon Caly, Meera Chand, Mark Chen, Ann Cullinane, Tulio de Oliveira, Christian Drosten, Julian Druce, Paul Effler, Ihab El Masry, Adama Faye, Elodie Ghedin, Rebecca Grant, Bart L Haagmans, Christian T Happi, Belinda L Herring, Emma B Hodcroft, Juniorcaius Ikejezie, Victoria Katawera, Zyleen Alnashir Kassamali, Yee Sin Leo, Gabriel M Leung, Rebecca J Kondor, Marco Marklewitz, Jairo Mendez-Rico, Nada M Melhem, Vincent J Munster, Karen Nahapetyan, Dhamari Naindoo, Djin-Ye Oh, Thomas P Peacock, Joseph S Malik Peiris, Zhibin Peng, Leo L M Poon, Andrew Rambaut, Senjuti Saha, Yinzhong Shen, Marilda M Siqueira, Erik M Volz, Sofonias K Tessema, Volker Thiel, Henda Triki, Sylvie van der Werf, Karin J von Eije, Jane Cunningham, Marion P G Koopmans, Anne von Gottberg, Anurag Agrawal, Maria D Van Kerkhove
An updated framework for SARS-CoV-2 variants reflects the unpredictability of viral evolution. Nature medicine (2024)
Orsolya Anna Pipek, Anna Medgyes-Horváth, József Stéger, Krisztian Papp, Dávid Visontai, Marion P G Koopmans, David F Nieuwenhuijse, Bas Oude Munnink, null null, István Csabai
Systematic detection of co-infection and intra-host recombination in more than 2 million global SARS-CoV-2 samples. Nature communications 15 (1) (2024)
Orsolya Anna Pipek, Anna Medgyes-Horváth, József Stéger, Krisztian Papp, Dávid Visontai, Marion P G Koopmans, David F Nieuwenhuijse, Bas Oude Munnink, null null, István Csabai
Systematic detection of co-infection and intra-host recombination in more than 2 million global SARS-CoV-2 samples. Nature communications 15 (1) (2024)
Lorenzo Subissi, James Richard Otieno, Nathalie Worp, Homa Attar Cohen, Bas Oude Munnink, Laith Jamal Abu-Raddad, Erik Alm, Amal Barakat, Wendy S Barclay, Jinal N Bhiman, Leon Caly, Meera Chand, Mark Chen, Ann Cullinane, Tulio de Oliveira, Christian Drosten, Julian Druce, Paul Effler, Ihab El Masry, Adama Faye, Elodie Ghedin, Rebecca Grant, Bart L Haagmans, Christian T Happi, Belinda L Herring, Emma B Hodcroft, Juniorcaius Ikejezie, Victoria Katawera, Zyleen Alnashir Kassamali, Yee Sin Leo, Gabriel M Leung, Rebecca J Kondor, Marco Marklewitz, Jairo Mendez-Rico, Nada M Melhem, Vincent J Munster, Karen Nahapetyan, Dhamari Naindoo, Djin-Ye Oh, Thomas P Peacock, Joseph S Malik Peiris, Zhibin Peng, Leo L M Poon, Andrew Rambaut, Senjuti Saha, Yinzhong Shen, Marilda M Siqueira, Erik M Volz, Sofonias K Tessema, Volker Thiel, Henda Triki, Sylvie van der Werf, Karin J von Eije, Jane Cunningham, Marion P G Koopmans, Anne von Gottberg, Anurag Agrawal, Maria D Van Kerkhove
An updated framework for SARS-CoV-2 variants reflects the unpredictability of viral evolution. Nature medicine (2024)
Orsolya Anna Pipek, Anna Medgyes-Horváth, József Stéger, Krisztian Papp, Dávid Visontai, Marion P G Koopmans, David F Nieuwenhuijse, Bas Oude Munnink, null null, István Csabai
Systematic detection of co-infection and intra-host recombination in more than 2 million global SARS-CoV-2 samples. Nature communications 15 (1) (2024)
Bas Oude Munnink, Marion P G Koopmans
Tracking SARS-CoV-2 variants and resources. Nature methods (2023)
Lorenzo Subissi, Anne von Gottberg, Lipi Thukral, Nathalie Worp, Bas Oude Munnink, Surabhi Rathore, Laith Jamal Abu-Raddad, Ximena Aguilera, Erik Alm, Brett Nicholas Archer, Homa Attar Cohen, Amal Barakat, Wendy S Barclay, Jinal N Bhiman, Leon Caly, Meera Chand, Mark Chen, Ann Cullinane, Tulio de Oliveira, Christian Drosten, Julian Druce, Paul Effler, Ihab El Masry, Adama Faye, Simani Gaseitsiwe, Elodie Ghedin, Rebecca Grant, Bart L Haagmans, Belinda L Herring, Shilpa S Iyer, Zyleen Alnashir Kassamali, Manish Kakkar, Rebecca J Kondor, Juliana Almeida Leite, Yee Sin Leo, Gabriel M Leung, Marco Marklewitz, Sikhulile Moyo, Jairo Mendez-Rico, Nada M Melhem, Vincent J Munster, Karen Nahapetyan, Djin-Ye Oh, Boris I Pavlin, Thomas P Peacock, Joseph S Malik Peiris, Zhibin Peng, Leo L M Poon, Andrew Rambaut, Jilian Sacks, Yinzhong Shen, Marilda M Siqueira, Sofonias K Tessema, Erik M Volz, Volker Thiel, Sylvie van der Werf, Sylvie Briand, Mark D Perkins, Maria D Van Kerkhove, Marion P G Koopmans, Anurag Agrawal
An early warning system for emerging SARS-CoV-2 variants. Nature medicine 28 (6) (2022)
David F Nieuwenhuijse, Anne van der Linden, Robert H G Kohl, Reina S Sikkema, Marion P G Koopmans, Bas Oude Munnink
Towards reliable whole genome sequencing for outbreak preparedness and response. BMC genomics 23 (1) (2022)
Anna Z Mykytyn, Melanie Rissmann, Adinda Kok, Miruna E Rosu, Debby Schipper, Tim I Breugem, Petra B van den Doel, Felicity Chandler, Theo Bestebroer, Maurice de Wit, Martin E van Royen, Richard Molenkamp, Bas Oude Munnink, Rory D De Vries, Corine H Geurts van Kessel, Derek J Smith, Marion P G Koopmans, Barry Rockx, Mart M Lamers, Ron A M Fouchier, Bart L Haagmans
Antigenic cartography of SARS-CoV-2 reveals that Omicron BA.1 and BA.2 are antigenically distinct. Science immunology 7 (75) (2022)
Frank Konings, Mark D Perkins, Jens H Kuhn, Mark J Pallen, Erik J Alm, Brett N Archer, Amal Barakat, Trevor Bedford, Jinal N Bhiman, Leon Caly, Lisa L Carter, Anne Cullinane, Tulio de Oliveira, Julian Druce, Ihab El Masry, Roger Evans, George F Gao, Alexander E Gorbalenya, Esther Hamblion, Belinda L Herring, Emma Hodcroft, Edward C Holmes, Manish Kakkar, Shagun Khare, Marion P G Koopmans, Bette Korber, Juliana Leite, Duncan MacCannell, Marco Marklewitz, Sebastian Maurer-Stroh, Jairo Andres Mendez Rico, Vincent J Munster, Richard A Neher, Bas Oude Munnink, Boris I Pavlin, Joseph S Malik Peiris, Leo L M Poon, Oliver George Pybus, Andrew Rambaut, Paola Cristina Resende Silva, Lorenzo Subissi, Volker Thiel, Suxiang Tong, Sylvie van der Werf, Anne von Gottberg, John Ziebuhr, Maria D Van Kerkhove
SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse. Nature microbiology 6 (7) (2021)
Daryl Geers, Marc C Shamier, Susanne Bogers, Gerco den Hartog, Lennert Gommers, Nella N Nieuwkoop, Katharina S Schmitz, Laurine C Rijsbergen, Jolieke A T van Osch, Emma Dijkhuizen, Gaby Smits, Anouskha Comvalius, Djenolan van Mourik, Tom G Caniels, Marit J VAN Gils, Rogier W Sanders, Bas Oude Munnink, Richard Molenkamp, Herbert J de Jager, Bart L Haagmans, Rik L de Swart, Marion P G Koopmans, Robert S van Binnendijk, Rory D De Vries, Corine H Geurts van Kessel
SARS-CoV-2 variants of concern partially escape humoral but not T-cell responses in COVID-19 convalescent donors and vaccinees. Science immunology 6 (59) (2021)
Philippe Lemey, Nick Ruktanonchai, Samuel Leandro Hong, Vittoria Colizza, Chiara Poletto, Frederik Van den Broeck, Mandev S Gill, Xiang Ji, Anthony Levasseur, Bas Oude Munnink, Marion Koopmans, Adam Sadilek, Shengjie Lai, Andrew J Tatem, Guy Baele, Marc A Suchard, Simon Dellicour
Untangling introductions and persistence in COVID-19 resurgence in Europe. Nature 595 (7869) (2021)
Lu Lu, Reina S Sikkema, Francisca C Velkers, David F Nieuwenhuijse, Egil A J Fischer, Paola A Meijer, Noortje Bouwmeester-Vincken, Ariene Rietveld, Marjolijn C A Wegdam-Blans, Paulien Tolsma, Marco Koppelman, Lidwien A M Smit, Renate W Hakze-van der Honing, Wim H M Van der Poel, Arco N van der Spek, Marcel A H Spierenburg, Robert Jan Molenaar, Jan de Rond, Marieke Augustijn-Schretlen, Mark E J Woolhouse, J Arjan Stegeman, Samantha J Lycett, Bas Oude Munnink, Marion P G Koopmans
Adaptation, spread and transmission of SARS-CoV-2 in farmed minks and associated humans in the Netherlands. Nature communications 12 (1) (2021)
Bas Oude Munnink, Nathalie Worp, David F Nieuwenhuijse, Reina S Sikkema, Bart L Haagmans, Ron A M Fouchier, Marion P G Koopmans
The next phase of SARS-CoV-2 surveillance: real-time molecular epidemiology. Nature medicine 27 (9) (2021)
Bas Oude Munnink, Reina S Sikkema, David F Nieuwenhuijse, Robert Jan Molenaar, Emmanuelle Munger, Richard Molenkamp, Arco van der Spek, Paulien Tolsma, Ariene Rietveld, Miranda Brouwer, Noortje Bouwmeester-Vincken, Frank Harders, Renate Hakze-van der Honing, Marjolein C A Wegdam-Blans, Ruth J Bouwstra, Corine GeurtsvanKessel, Annemiek A van der Eijk, Francisca C Velkers, Lidwien A M Smit, Jan Arend Stegeman, Wim H M Van der Poel, Marion P G Koopmans
Transmission of SARS-CoV-2 on mink farms between humans and mink and back to humans. Science (New York, N.Y.) 371 (6525) (2020)
Bas Oude Munnink, David F Nieuwenhuijse, Mart L Stein, Áine Niamh O'Toole, Manon Haverkate, Madelief Mollers, Sandra K Kamga, Claudia Schapendonk, Mark Pronk, Pascal Lexmond, Anne van der Linden, Theo Bestebroer, Irina Chestakova, Ronald J Overmars, Stefan van Nieuwkoop, Richard Molenkamp, Annemiek A van der Eijk, Corine H Geurts van Kessel, Harry Vennema, Adam Meijer, Andrew Rambaut, Jaap van Dissel, Reina S Sikkema, Aura Timen, Marion P G Koopmans, null null
Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands. Nature medicine 26 (9) (2020)