Benjamin Schubert (B Schubert)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 10

Top Topics

Gene Expression

Genome Wide Association Study

Top Venues

Nature communications

PLoS computational biology

BMC bioinformatics

This page only lists publications with an associated author ORCID identifier.

Publications

Felix Drost, Yang An, Irene Bonafonte-Pardàs, Lisa M Dratva, Rik G H Lindeboom, Muzlifah A Haniffa, Sarah A Teichmann, Fabian Joachim Theis, Mohammad Lotfollahi, Benjamin Schubert
Multi-modal generative modeling for joint analysis of single-cell T cell receptor and gene expression data. Nature communications 15 (1) (2024)
Felix Drost, Yang An, Irene Bonafonte-Pardàs, Lisa M Dratva, Rik G H Lindeboom, Muzlifah A Haniffa, Sarah A Teichmann, Fabian Joachim Theis, Mohammad Lotfollahi, Benjamin Schubert
Multi-modal generative modeling for joint analysis of single-cell T cell receptor and gene expression data. Nature communications 15 (1) (2024)
Felix Drost, Yang An, Irene Bonafonte-Pardàs, Lisa M Dratva, Rik G H Lindeboom, Muzlifah A Haniffa, Sarah A Teichmann, Fabian Joachim Theis, Mohammad Lotfollahi, Benjamin Schubert
Multi-modal generative modeling for joint analysis of single-cell T cell receptor and gene expression data. Nature communications 15 (1) (2024)
Maren Büttner, J Ostner, Christian L Müller, Fabian Joachim Theis, Benjamin Schubert
scCODA is a Bayesian model for compositional single-cell data analysis. Nature communications 12 (1) (2021)
David S Fischer, Yihan Wu, Benjamin Schubert, Fabian Joachim Theis
Predicting antigen specificity of single T cells based on TCR CDR3 regions. Molecular systems biology 16 (8) (2021)
Emilio Dorigatti, Benjamin Schubert
Graph-theoretical formulation of the generalized epitope-based vaccine design problem. PLoS computational biology 16 (10) (2020)
Benjamin Schubert, Charlotta Schärfe, Pierre Dönnes, Thomas Hopf, Debora Marks, Oliver Kohlbacher
Population-specific design of de-immunized protein biotherapeutics. PLoS computational biology 14 (3) (2018)
Pilar Domingo-Calap, Benjamin Schubert, Mélanie Joly, Morgane Solis, Meiggie Untrau, Raphael Carapito, Philippe Georgel, Sophie Caillard, Samira Fafi-Kremer, Nicodème Paul, Oliver Kohlbacher, Fernando Gonzáles-Candelas, Seiamak Bahram
An unusually high substitution rate in transplant-associated BK polyomavirus in vivo is further concentrated in HLA-C-bound viral peptides. PLoS pathogens 14 (10) (2018)
Benjamin Schubert, Rohan Maddamsetti, Jackson Nyman, Maha R Farhat, Debora S Marks
Genome-wide discovery of epistatic loci affecting antibiotic resistance in Neisseria gonorrhoeae using evolutionary couplings. Nature microbiology 4 (2) (2018)
Benjamin Schubert, Luis de la Garza, Christopher Mohr, Mathias Walzer, Oliver Kohlbacher
ImmunoNodes - graphical development of complex immunoinformatics workflows. BMC bioinformatics 18 (1) (2017)