Oliver Kohlbacher (O Kohlbacher)

Scopus Author ID ResearcherID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 55

Top Venues

Nature communications

Nature methods

Nature

Journal of proteome research

This page only lists publications with an associated author ORCID identifier.

Publications

Rodrigo Barquera-Lozano, Oana Del Castillo-Chávez, Kathrin Nägele, Patxi Pérez-Ramallo, Diana Iraíz Hernández-Zaragoza, András Szolek, Adam Benjamin Rohrlach, Pablo Librado, Ainash Childebayeva, Raffaela Angelina Bianco, Bridget S Penman, Victor Acuña-Alonzo, Mary Lucas, Julio César Lara-Riegos, María Ermila Moo-Mezeta, Julio César Torres-Romero, Patrick Roberts, Oliver Kohlbacher, Christina Warinner, Johannes Krause
Ancient genomes reveal insights into ritual life at Chichén Itzá. Nature 630 (8018) (2024)
Julianus Pfeuffer, Chris Bielow, Samuel Wein, Kyowon Jeong, Eugen Netz, Axel Walter, Oliver Alka, Lars Nilse, Pasquale Domenico Colaianni, Douglas McCloskey, Jihyung Kim, George A Rosenberger, Leon Bichmann, Mathias Walzer, Johannes Veit, Bertrand Boudaud, Matthias Bernt, Nikolaos Patikas, Matteo Pilz, Michał Piotr Startek, Svetlana Kutuzova, Lukas Heumos, Joshua Charkow, Justin Cyril Sing, Ayesha Feroz, Arslan Siraj, Hendrik Weisser, Tjeerd Maarten Hein Dijkstra, Yasset Perez Riverol, Hannes L Röst, Oliver Kohlbacher, Timo Sachsenberg
OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data. Nature methods 21 (3) (2024)
Rodrigo Barquera-Lozano, Oana Del Castillo-Chávez, Kathrin Nägele, Patxi Pérez-Ramallo, Diana Iraíz Hernández-Zaragoza, András Szolek, Adam Benjamin Rohrlach, Pablo Librado, Ainash Childebayeva, Raffaela Angelina Bianco, Bridget S Penman, Victor Acuña-Alonzo, Mary Lucas, Julio César Lara-Riegos, María Ermila Moo-Mezeta, Julio César Torres-Romero, Patrick Roberts, Oliver Kohlbacher, Christina Warinner, Johannes Krause
Ancient genomes reveal insights into ritual life at Chichén Itzá. Nature 630 (8018) (2024)
Sascha Welten, Marius de Arruda Botelho Herr, Lars Hempel, David Hieber, Peter Placzek, Michael Graf, Sven Weber, Laurenz Neumann, Maximilian Jugl, Liam Tirpitz, Karl Kindermann, Sandra Geisler, Luiz Bonino da Silva Santos, Stefan Decker, Nico Pfeifer, Oliver Kohlbacher, Toralf Kirsten
A study on interoperability between two Personal Health Train infrastructures in leukodystrophy data analysis. Scientific data 11 (1) (2024)
Sascha Welten, Marius de Arruda Botelho Herr, Lars Hempel, David Hieber, Peter Placzek, Michael Graf, Sven Weber, Laurenz Neumann, Maximilian Jugl, Liam Tirpitz, Karl Kindermann, Sandra Geisler, Luiz Bonino da Silva Santos, Stefan Decker, Nico Pfeifer, Oliver Kohlbacher, Toralf Kirsten
A study on interoperability between two Personal Health Train infrastructures in leukodystrophy data analysis. Scientific data 11 (1) (2024)
Julianus Pfeuffer, Chris Bielow, Samuel Wein, Kyowon Jeong, Eugen Netz, Axel Walter, Oliver Alka, Lars Nilse, Pasquale Domenico Colaianni, Douglas McCloskey, Jihyung Kim, George A Rosenberger, Leon Bichmann, Mathias Walzer, Johannes Veit, Bertrand Boudaud, Matthias Bernt, Nikolaos Patikas, Matteo Pilz, Michał Piotr Startek, Svetlana Kutuzova, Lukas Heumos, Joshua Charkow, Justin Cyril Sing, Ayesha Feroz, Arslan Siraj, Hendrik Weisser, Tjeerd Maarten Hein Dijkstra, Yasset Perez Riverol, Hannes L Röst, Oliver Kohlbacher, Timo Sachsenberg
OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data. Nature methods 21 (3) (2024)
Sascha Welten, Marius de Arruda Botelho Herr, Lars Hempel, David Hieber, Peter Placzek, Michael Graf, Sven Weber, Laurenz Neumann, Maximilian Jugl, Liam Tirpitz, Karl Kindermann, Sandra Geisler, Luiz Bonino da Silva Santos, Stefan Decker, Nico Pfeifer, Oliver Kohlbacher, Toralf Kirsten
A study on interoperability between two Personal Health Train infrastructures in leukodystrophy data analysis. Scientific data 11 (1) (2024)
Rodrigo Barquera-Lozano, Oana Del Castillo-Chávez, Kathrin Nägele, Patxi Pérez-Ramallo, Diana Iraíz Hernández-Zaragoza, András Szolek, Adam Benjamin Rohrlach, Pablo Librado, Ainash Childebayeva, Raffaela Angelina Bianco, Bridget S Penman, Victor Acuña-Alonzo, Mary Lucas, Julio César Lara-Riegos, María Ermila Moo-Mezeta, Julio César Torres-Romero, Patrick Roberts, Oliver Kohlbacher, Christina Warinner, Johannes Krause
Ancient genomes reveal insights into ritual life at Chichén Itzá. Nature 630 (8018) (2024)
Alexander Hirth, Edoardo Fatti, Eugen Netz, Sergio P Acebron, Dimitris Papageorgiou, Andrea Švorinić, Cristina-Maria Cruciat, Emil Karaulanov, Alexandr Gopanenko, Tianheng Zhu, Irmgard Sinning, Jeroen Krijgsveld, Oliver Kohlbacher, Christof Niehrs
DEAD box RNA helicases are pervasive protein kinase interactors and activators. Genome research (2024)
Luisa M Welp, Timo Sachsenberg, Alexander Wulf, Aleksandar Chernev, Yehor Horokhovskyi, Piotr Neumann, Martin Pašen, Arslan Siraj, Monika Raabe, Sven Johannsson, Jana Schmitzova, Eugen Netz, Julianus Pfeuffer, Yi He, Kai Fritzemeier, Bernard Delanghe, Rosa Viner, Seychelle M Vos, Patrick Cramer, Ralf Ficner, Juliane Liepe, Oliver Kohlbacher, Henning Urlaub
Chemical crosslinking extends and complements UV crosslinking in analysis of RNA/DNA nucleic acid-protein interaction sites by mass spectrometry. bioRxiv : the preprint server for biology (2024)
Chengxin Dai, Julianus Pfeuffer, Hong Wang, Ping Zheng, Lukas Käll, Timo Sachsenberg, Vadim Demichev, Mingze Bai, Oliver Kohlbacher, Yasset Perez Riverol
quantms: a cloud-based pipeline for quantitative proteomics enables the reanalysis of public proteomics data. Nature methods (2024)
Alexander Hirth, Edoardo Fatti, Eugen Netz, Sergio P Acebron, Dimitris Papageorgiou, Andrea Švorinić, Cristina-Maria Cruciat, Emil Karaulanov, Alexandr Gopanenko, Tianheng Zhu, Irmgard Sinning, Jeroen Krijgsveld, Oliver Kohlbacher, Christof Niehrs
DEAD box RNA helicases are pervasive protein kinase interactors and activators. Genome research 34 (6) (2024)
Julianus Pfeuffer, Chris Bielow, Samuel Wein, Kyowon Jeong, Eugen Netz, Axel Walter, Oliver Alka, Lars Nilse, Pasquale Domenico Colaianni, Douglas McCloskey, Jihyung Kim, George A Rosenberger, Leon Bichmann, Mathias Walzer, Johannes Veit, Bertrand Boudaud, Matthias Bernt, Nikolaos Patikas, Matteo Pilz, Michał Piotr Startek, Svetlana Kutuzova, Lukas Heumos, Joshua Charkow, Justin Cyril Sing, Ayesha Feroz, Arslan Siraj, Hendrik Weisser, Tjeerd Maarten Hein Dijkstra, Yasset Perez Riverol, Hannes L Röst, Oliver Kohlbacher, Timo Sachsenberg
OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data. Nature methods (2024)
Alexander Hirth, Edoardo Fatti, Eugen Netz, Sergio P Acebron, Dimitris Papageorgiou, Andrea Švorinić, Cristina-Maria Cruciat, Emil Karaulanov, Alexandr Gopanenko, Tianheng Zhu, Irmgard Sinning, Jeroen Krijgsveld, Oliver Kohlbacher, Christof Niehrs
DEAD box RNA helicases are pervasive protein kinase interactors and activators. Genome research 34 (6) (2024)
Rodrigo Barquera-Lozano, Oana Del Castillo-Chávez, Kathrin Nägele, Patxi Pérez-Ramallo, Diana Iraíz Hernández-Zaragoza, András Szolek, Adam Benjamin Rohrlach, Pablo Librado, Ainash Childebayeva, Raffaela Angelina Bianco, Bridget S Penman, Victor Acuña-Alonzo, Mary Lucas, Julio César Lara-Riegos, María Ermila Moo-Mezeta, Julio César Torres-Romero, Patrick Roberts, Oliver Kohlbacher, Christina Warinner, Johannes Krause
Ancient genomes reveal insights into ritual life at Chichén Itzá. Nature (2024)
Sascha Welten, Marius de Arruda Botelho Herr, Lars Hempel, David Hieber, Peter Placzek, Michael Graf, Sven Weber, Laurenz Neumann, Maximilian Jugl, Liam Tirpitz, Karl Kindermann, Sandra Geisler, Luiz Bonino da Silva Santos, Stefan Decker, Nico Pfeifer, Oliver Kohlbacher, Toralf Kirsten
A study on interoperability between two Personal Health Train infrastructures in leukodystrophy data analysis. Scientific data 11 (1) (2024)
Alexander Röhl, Eugen Netz, Oliver Kohlbacher, Hadeer Elhabashy
CLAUDIO: automated structural analysis of cross-linking data. Bioinformatics (Oxford, England) 40 (4) (2024)
Alexander Hirth, Edoardo Fatti, Eugen Netz, Sergio P Acebron, Dimitris Papageorgiou, Andrea Švorinić, Cristina-Maria Cruciat, Emil Karaulanov, Alexandr Gopanenko, Tianheng Zhu, Irmgard Sinning, Jeroen Krijgsveld, Oliver Kohlbacher, Christof Niehrs
DEAD box RNA helicases are pervasive protein kinase interactors and activators. Genome research 34 (6) (2024)
Rodrigo Barquera-Lozano, Oana Del Castillo-Chávez, Kathrin Nägele, Patxi Pérez-Ramallo, Diana Iraíz Hernández-Zaragoza, András Szolek, Adam Benjamin Rohrlach, Pablo Librado, Ainash Childebayeva, Raffaela Angelina Bianco, Bridget S Penman, Victor Acuña-Alonzo, Mary Lucas, Julio César Lara-Riegos, María Ermila Moo-Mezeta, Julio César Torres-Romero, Patrick Roberts, Oliver Kohlbacher, Christina Warinner, Johannes Krause
Ancient genomes reveal insights into ritual life at Chichén Itzá. Nature 630 (8018) (2024)
Lena Mühlenbruch, Tsima Abou-Kors, Marissa L Dubbelaar, Leon Bichmann, Oliver Kohlbacher, Martin Bens, Jaya Thomas, Jasmin Ezić, Johann M Kraus, Hans A Kestler, Adrian von Witzleben, Joannis Mytilineos, Daniel Fürst, Daphne Engelhardt, Johannes Doescher, Jens Greve, Patrick J Schuler, Marie-Nicole Theodoraki, Cornelia Brunner, Thomas K Hoffmann, Hans-Georg Rammensee, Juliane S Walz, Simon Laban
The HLA ligandome of oropharyngeal squamous cell carcinomas reveals shared tumour-exclusive peptides for semi-personalised vaccination. British journal of cancer (2023)
Mirjam Renovanz, Sylvia C Kurz, Johannes Rieger, Bianca Walter, Hannes Becker, Hanni Hille, Paula Bombach, David Rieger, Lucia Grosse, Lara Häusser, Marco Skardelly, Daniel J Merk, Frank Paulsen, Elgin Hoffmann, Cihan Gani, Manuela Neumann, Rudi Beschorner, Olaf Rieß, Cristiana Roggia, Christopher Schroeder, Stephan Ossowski, Sorin Armeanu-Ebinger, Axel Gschwind, Saskia Biskup, Martin Schulze, Falko Fend, Stephan Singer, Lars Zender, Claudia Lengerke, Sara Yvonne Brucker, Tobias Engler, Andrea Forschner, Arnulf Stenzl, Oliver Kohlbacher, Sven Nahnsen, Gisela Gabernet, Sven Fillinger, Benjamin Bender, Ulrike Ernemann, Öznur Öner, Janina Beha, Holly Sundberg Malek, Yvonne Möller, Kristina Ruhm, Marcos Tatagiba, Cornelia Brendle, Michael Bitzer, Nisar Malek, Daniel Zips, Ghazaleh Tabatabai
Clinical outcome of biomarker-guided therapies in adult patients with tumors of the nervous system. Neuro-oncology advances 5 (1) (2023)
Mirjam Renovanz, Sylvia C Kurz, Johannes Rieger, Bianca Walter, Hannes Becker, Hanni Hille, Paula Bombach, David Rieger, Lucia Grosse, Lara Häusser, Marco Skardelly, Daniel J Merk, Frank Paulsen, Elgin Hoffmann, Cihan Gani, Manuela Neumann, Rudi Beschorner, Olaf Rieß, Cristiana Roggia, Christopher Schroeder, Stephan Ossowski, Sorin Armeanu-Ebinger, Axel Gschwind, Saskia Biskup, Martin Schulze, Falko Fend, Stephan Singer, Lars Zender, Claudia Lengerke, Sara Yvonne Brucker, Tobias Engler, Andrea Forschner, Arnulf Stenzl, Oliver Kohlbacher, Sven Nahnsen, Gisela Gabernet, Sven Fillinger, Benjamin Bender, Ulrike Ernemann, Öznur Öner, Janina Beha, Holly Sundberg Malek, Yvonne Möller, Kristina Ruhm, Marcos Tatagiba, Cornelia Brendle, Michael Bitzer, Nisar Malek, Daniel Zips, Ghazaleh Tabatabai
Clinical outcome of biomarker-guided therapies in adult patients with tumors of the nervous system. Neuro-oncology advances 5 (1) (2023)
A L Illert, Albrecht Stenzinger, Michael Bitzer, Peter Horak, V I Gaidzik, Y Möller, J Beha, Ö Öner, F Schmitt, S Laßmann, S Ossowski, C P Schaaf, M Hallek, Tim Henrik Brümmendorf, P Albers, T Fehm, P Brossart, H Glimm, Dirk Schadendorf, A Bleckmann, Christian H Brandts, I Esposito, E Mack, C Peters, C Bokemeyer, Stefan Fröhling, T Kindler, Hana Algül, V Heinemann, Hartmut Döhner, Ralf Christian Bargou, V Ellenrieder, P Hillemanns, F Lordick, A Hochhaus, M W Beckmann, T Pukrop, M Trepel, L Sundmacher, S Wesselmann, G Nettekoven, F Kohlhuber, O Heinze, Jan Budczies, M Werner, K Nikolaou, A J Beer, G Tabatabai, W Weichert, U Keilholz, M Boerries, Oliver Kohlbacher, J Duyster, Robert Thimme, T Seufferlein, P Schirmacher, N P Malek
The German Network for Personalized Medicine to enhance patient care and translational research. Nature medicine (2023)
Lena Mühlenbruch, Tsima Abou-Kors, Marissa L Dubbelaar, Leon Bichmann, Oliver Kohlbacher, Martin Bens, Jaya Thomas, Jasmin Ezić, Johann M Kraus, Hans A Kestler, Adrian von Witzleben, Joannis Mytilineos, Daniel Fürst, Daphne Engelhardt, Johannes Doescher, Jens Greve, Patrick J Schuler, Marie-Nicole Theodoraki, Cornelia Brunner, Thomas K Hoffmann, Hans-Georg Rammensee, Juliane S Walz, Simon Laban
The HLA ligandome of oropharyngeal squamous cell carcinomas reveals shared tumour-exclusive peptides for semi-personalised vaccination. British journal of cancer (2023)
Kyowon Jeong, Maša Babović, Vladimir A Gorshkov, Jihyung Kim, Ole Nørregaard Jensen, Oliver Kohlbacher
FLASHIda enables intelligent data acquisition for top-down proteomics to boost proteoform identification counts. Nature communications 13 (1) (2022)
Jasjot Singh, Hadeer Elhabashy, Pathma Muthukottiappan, Markus Stepath, Martin Eisenacher, Oliver Kohlbacher, Volkmar Gieselmann, Dominic Winter
Cross-linking of the endolysosomal system reveals potential flotillin structures and cargo. Nature communications 13 (1) (2022)
Ainash Childebayeva, Adam Benjamin Rohrlach, Rodrigo Barquera, Maïté Rivollat, Franziska Aron, András Szolek, Oliver Kohlbacher, Nicole Nicklisch, Kurt W Alt, Detlef Gronenborn, Harald Meller, Susanne Friederich, Kay Prüfer, Marie-France Deguilloux, Johannes Krause, Wolfgang Haak
Population Genetics and Signatures of Selection in Early Neolithic European Farmers. Molecular biology and evolution 39 (6) (2022)
Oliver Alka, Premy Shanthamoorthy, Michael Witting, Karin Kleigrewe, Oliver Kohlbacher, Hannes L Röst
DIAMetAlyzer allows automated false-discovery rate-controlled analysis for data-independent acquisition in metabolomics. Nature communications 13 (1) (2022)
Magnus Palmblad, Sebastian Böcker, Sven Degroeve, Oliver Kohlbacher, Lukas Käll, William Stafford Noble, Mathias Wilhelm
Interpretation of the DOME Recommendations for Machine Learning in Proteomics and Metabolomics. Journal of proteome research 21 (4) (2022)
Rebecca Buchert, Elisabeth Schenk, Thomas Hentrich, Nico Weber, Kristin Katharina Rall, Marc Sturm, Oliver Kohlbacher, André Koch, Olaf H Rieß, Sara Yvonne Brucker, Julia M Schulze-Hentrich
Genome Sequencing and Transcriptome Profiling in Twins Discordant for Mayer-Rokitansky-Küster-Hauser Syndrome. Journal of clinical medicine 11 (19) (2022)
Alexander Immel, Federica Pierini, Christoph Rinne, John Meadows, Rodrigo Barquera-Lozano, András Szolek, Julian Susat, Lisa Böhme, Janina Dose, Joanna Bonczarowska, Clara Drummer, Katharina Fuchs, David Ellinghaus, Jan Christian Kässens, Martin Furholt, Oliver Kohlbacher, Sabine Schade-Lindig, Andre Franke, Stefan Schreiber, Johannes Krause, Johannes Müller, Tobias L Lenz, Almut Nebel, Ben Krause-Kyora
Genome-wide study of a Neolithic Wartberg grave community reveals distinct HLA variation and hunter-gatherer ancestry. Communications biology 4 (1) (2021)
Gunnar Völkel, Axel Fürstberger, Julian D Schwab, Silke D Kühlwein, Nensi Ikonomi, Thomas Gscheidmeier, Johann M Kraus, Alexander Groß, Martin Holderried, Julien Balig, Franz Jobst, Peter Kuhn, Klaus A Kuhn, Oliver Kohlbacher, Udo X Kaisers, Thomas Seufferlein, Hans Armin Kestler
Patient Empowerment During the COVID-19 Pandemic by Ensuring Safe and Fast Communication of Test Results: Implementation and Performance of a Tracking System. Journal of medical Internet research 23 (6) (2021)
Anna G Green, Hadeer Elhabashy, Kelly P Brock, Rohan Maddamsetti, Oliver Kohlbacher, Debora S Marks
Large-scale discovery of protein interactions at residue resolution using co-evolution calculated from genomic sequences. Nature communications 12 (1) (2021)
Gunnar Völkel, Axel Fürstberger, Julian D Schwab, Silke D Kühlwein, Nensi Ikonomi, Thomas Gscheidmeier, Johann M Kraus, Alexander Groß, Martin Holderried, Julien Balig, Franz Jobst, Peter Kuhn, Klaus A Kuhn, Oliver Kohlbacher, Udo X Kaisers, Thomas Seufferlein, Hans Armin Kestler
Metadata Correction: Patient Empowerment During the COVID-19 Pandemic by Ensuring Safe and Fast Communication of Test Results: Implementation and Performance of a Tracking System. Journal of medical Internet research 23 (6) (2021)
Chengxin Dai, Anja Füllgrabe, Julianus Pfeuffer, Elizaveta M Solovyeva, Jingwen Deng, Pablo Moreno, Selvakumar Kamatchinathan, Deepti Jaiswal Kundu, Nancy George, Silvie Fexova, Bjoern Andreas Gruening, Melanie Christine Föll, Johannes Griss, Marc Vaudel, Enrique Audain, Marie Locard-Paulet, Michael Turewicz, Martin Eisenacher, Julian Uszkoreit, Tim Van Den Bossche, Veit Schwämmle, Henry Webel, Stefan Schulze, David Bouyssié, Savita Jayaram, Vinay Kumar Duggineni, Patroklos Samaras, Mathias Wilhelm, Meena Choi, Mingxun Wang, Oliver Kohlbacher, Alvis Brazma, Irene Papatheodorou, Nuno Bandeira, Eric W Deutsch, Juan Antonio Vizcaino, Mingze Bai, Timo Sachsenberg, Lev I Levitsky, Yasset Perez Riverol
A proteomics sample metadata representation for multiomics integration and big data analysis. Nature communications 12 (1) (2021)
Leon Bichmann, Shubham Gupta, George Rosenberger, Leon Kuchenbecker, Timo Sachsenberg, Phil Ewels, Oliver Alka, Julianus Pfeuffer, Oliver Kohlbacher, Shubham Gupta
DIAproteomics: A Multifunctional Data Analysis Pipeline for Data-Independent Acquisition Proteomics and Peptidomics. Journal of proteome research 20 (7) (2021)
Juliane Klare, Marc Rurik, Eric Rottmann, Anke Bollen, Oliver Kohlbacher, Markus Fischer, Thomas Hackl
Determination of the Geographical Origin of Asparagus officinalis L. by 1H NMR Spectroscopy. Journal of agricultural and food chemistry 68 (49) (2020)
Svetlana Kutuzova, Pasquale Colaianni, Shubham Gupta, Timo Sachsenberg, Oliver Alka, Oliver Kohlbacher, Bo Burla, Federico Torta, Lars Schrübbers, Mette Kristensen, Lars Keld Nielsen, Markus J Herrgård, Douglas McCloskey
SmartPeak Automates Targeted and Quantitative Metabolomics Data Processing. Analytical chemistry 92 (24) (2020)
Annika Nelde, Tatjana Bilich, Jonas S Heitmann, Yacine Maringer, Helmut R Salih, Malte Roerden, Maren Lübke, Jens Bauer, Jonas Rieth, Marcel Wacker, Andreas Peter, Sebastian Hörber, Bjoern Traenkle, Philipp D Kaiser, Ulrich Rothbauer, Matthias Becker, Daniel Junker, Gérard Krause, Monika Strengert, Nicole Schneiderhan-Marra, Markus F Templin, Thomas O Joos, Daniel J Kowalewski, Vlatka Stos-Zweifel, Michael Fehr, Armin Rabsteyn, Valbona Mirakaj, Julia Karbach, Elke Jäger, Michael Graf, Lena-Christin Gruber, David Rachfalski, Beate Preuß, Ilona Hagelstein, Melanie Märklin, Tamam Bakchoul, Cécile Gouttefangeas, Oliver Kohlbacher, Reinhild Klein, Stefan Stevanović, Hans-Georg Rammensee, Juliane Sarah Walz
SARS-CoV-2-derived peptides define heterologous and COVID-19-induced T cell recognition. Nature immunology 22 (1) (2020)
Samuel Wein, Byron Andrews, Timo Sachsenberg, Helena Santos-Rosa, Oliver Kohlbacher, Tony Kouzarides, Benjamin A Garcia, Hendrik Weisser
A computational platform for high-throughput analysis of RNA sequences and modifications by mass spectrometry. Nature communications 11 (1) (2020)
Alexandra Stützer, Luisa M Welp, Monika Raabe, Timo Sachsenberg, Christin Kappert, Alexander Wulf, Andy M C Lau, Stefan-Sebastian David, Aleksandar Chernev, Katharina Kramer, Argyris Politis, Oliver Kohlbacher, Wolfgang Fischle, Henning Urlaub
Analysis of protein-DNA interactions in chromatin by UV induced cross-linking and mass spectrometry. Nature communications 11 (1) (2020)
Julianus Pfeuffer, Timo Sachsenberg, Tjeerd M H Dijkstra, Oliver Serang, Knut Reinert, Oliver Kohlbacher
EPIFANY: A Method for Efficient High-Confidence Protein Inference. Journal of proteome research 19 (3) (2020)
Lisa Samonig, Andrea Loipetzberger, Constantin Blöchl, Marc Rurik, Oliver Kohlbacher, Fritz Aberger, Christian G Huber
Proteins and Molecular Pathways Relevant for the Malignant Properties of Tumor-Initiating Pancreatic Cancer Cells. Cells 9 (6) (2020)
Louis-Félix Nothias, Daniel Petras, Robin Schmid, Kai Dührkop, Johannes Rainer, Abinesh Sarvepalli, Ivan Protsyuk, Madeleine Ernst, Hiroshi Tsugawa, Markus Fleischauer, Fabian Aicheler, Alexander A Aksenov, Oliver Alka, Pierre-Marie Allard, Aiko Barsch, Xavier Cachet, Andrés Mauricio Caraballo-Rodriguez, Ricardo R Da Silva, Tam Dang, Neha Garg, Julia M Gauglitz, Alexey Gurevich, Giorgis Isaac, Alan K Jarmusch, Zdeněk Kameník, Kyo-Bin Kang, Nikolas Kessler, Irina Koester, Ansgar Korf, Audrey Le Gouëllec, Marcus Ludwig, Christian Martin H, Laura-Isobel McCall, Jonathan McSayles, Sven W Meyer, Hosein Mohimani, Mustafa Morsy, Oriane Moyne, Steffen Neumann, Heiko Neuweger, Ngoc Hung Nguyen, Melissa Nothias-Esposito, Julien Paolini, Vanessa V Phelan, Tomáš Pluskal, Robert A Quinn, Simon Rogers, Bindesh Shrestha, Anupriya Tripathi, Justin Johan Jozias van der Hooft, Fernando Vargas, Kelly C Weldon, Michael Witting, Heejung Yang, Zheng Zhang, Florian Zubeil, Oliver Kohlbacher, Sebastian Böcker, Theodore Alexandrov, Nuno Bandeira, Mingxun Wang, Pieter C Dorrestein
Feature-based molecular networking in the GNPS analysis environment. Nature methods 17 (9) (2020)
Ivana Winkler, Catrin Bitter, Sebastian Winkler, Dieter Weichenhan, Abhishek Thavamani, Jan G Hengstler, Erawan Borkham-Kamphorst, Oliver Kohlbacher, Christoph Plass, Robert Geffers, Ralf Weiskirchen, Alfred Nordheim
Identification of Pparγ-modulated miRNA hubs that target the fibrotic tumor microenvironment. Proceedings of the National Academy of Sciences of the United States of America 117 (1) (2019)
Daniel Wibberg, Bérénice Batut, Peter Belmann, Jochen Blom, Frank Oliver Glöckner, Bjoern Andreas Gruening, Nils Hoffmann, Nils Kleinbölting, René Rahn, Maja Rey, Uwe Scholz, Malvika Sharan, Andreas Tauch, Ulrike Trojahn, Björn Usadel, Oliver Kohlbacher
The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR. F1000Research (2019)
David Licha, Silvia Vidali, Sepideh Aminzadeh-Gohari, Oliver Alka, Leander Breitkreuz, Oliver Kohlbacher, Roland J Reischl, René Günther Feichtinger, Barbara Kofler, Christian G Huber
Untargeted Metabolomics Reveals Molecular Effects of Ketogenic Diet on Healthy and Tumor Xenograft Mouse Models. International journal of molecular sciences 20 (16) (2019)
Leon Bichmann, Annika Nelde, Michael Ghosh, Lukas Heumos, Christopher Mohr, Alexander Peltzer, Leon Kuchenbecker, Timo Sachsenberg, Juliane S Walz, Stefan Stevanović, Hans-Georg Rammensee, Oliver Kohlbacher
MHCquant: Automated and Reproducible Data Analysis for Immunopeptidomics. Journal of proteome research 18 (11) (2019)
Daniel Wibberg, Bérénice Batut, Peter Belmann, Jochen Blom, Frank Oliver Glöckner, Bjoern Andreas Gruening, Nils Hoffmann, Nils Kleinbölting, René Rahn, Maja Rey, Uwe Scholz, Malvika Sharan, Andreas Tauch, Ulrike Trojahn, Björn Usadel, Oliver Kohlbacher
The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR. F1000Research 8 (2019)
Benjamin Schubert, Charlotta Schärfe, Pierre Dönnes, Thomas Hopf, Debora Marks, Oliver Kohlbacher
Population-specific design of de-immunized protein biotherapeutics. PLoS computational biology 14 (3) (2018)
Pilar Domingo-Calap, Benjamin Schubert, Mélanie Joly, Morgane Solis, Meiggie Untrau, Raphael Carapito, Philippe Georgel, Sophie Caillard, Samira Fafi-Kremer, Nicodème Paul, Oliver Kohlbacher, Fernando Gonzáles-Candelas, Seiamak Bahram
An unusually high substitution rate in transplant-associated BK polyomavirus in vivo is further concentrated in HLA-C-bound viral peptides. PLoS pathogens 14 (10) (2018)
Markus W Löffler, Daniel J Kowalewski, Linus Backert, Jörg Bernhardt, Patrick Adam, Heiko Schuster, Florian Dengler, Daniel Backes, Hans-Georg Kopp, Stefan Stevanovic, Silvia Wagner, Ingmar Königsrainer, Oliver Kohlbacher, Lothar Kanz, Alfred Königsrainer, Hans-Georg Rammensee, Stefan Stevanović, Sebastian P Haen
Mapping the HLA Ligandome of Colorectal Cancer Reveals an Imprint of Malignant Cell Transformation. Cancer research 78 (16) (2018)
Tatjana Bilich, Annika Nelde, Leon Bichmann, Malte Roerden, Helmut R Salih, Daniel J Kowalewski, Heiko Schuster, Chih-Chiang Tsou, Ana Marcu, Marian Christoph Neidert, Maren Lübke, Jonas Rieth, Mirle Schemionek-Reinders, Tim Henrik Brümmendorf, Vladan Vucinic, Dietger Niederwieser, Jens Bauer, Melanie Märklin, Janet K Peper, Reinhild Klein, Oliver Kohlbacher, Lothar Kanz, Hans-Georg Rammensee, Stefan Stevanović, Juliane Sarah Walz
The HLA ligandome landscape of chronic myeloid leukemia delineates novel T-cell epitopes for immunotherapy. Blood 133 (6) (2018)
Hannes L Röst, Timo Sachsenberg, Stephan Aiche, Chris Bielow, Hendrik Weisser, Fabian Aicheler, Sandro Andreotti, Hans-Christian Ehrlich, Petra Gutenbrunner, Erhan Kenar, Xiao Liang, Sven Nahnsen, Lars Nilse, Julianus Pfeuffer, George A Rosenberger, Marc Rurik, Uwe Schmitt, Johannes Veit, Mathias Walzer, David Wojnar, Witold E Wolski, Oliver Schilling, Jyoti S Choudhary, Lars Malmström, Ruedi Aebersold, Knut Reinert, Oliver Kohlbacher
OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nature methods 13 (9) (2017)
Tobias Dietsche, Mehari Tesfazgi Mebrhatu, Matthias J Brunner, Patrizia Abrusci, Jun Yan, Mirita Franz-Wachtel, Charlotta Schärfe, Susann Zilkenat, Iwan Grin, Jorge E Galán, Oliver Kohlbacher, Susan M Lea, Boris Macek, Thomas C Marlovits, Carol V Robinson, Samuel Wagner
Structural and Functional Characterization of the Bacterial Type III Secretion Export Apparatus. PLoS pathogens 12 (12) (2016)
Andreas Friedrich, Erhan Kenar, Oliver Kohlbacher, Sven Nahnsen
Intuitive web-based experimental design for high-throughput biomedical data. BioMed research international 2015 (2015)
Sascha Venturelli, Regina G Belz, Andreas Kämper, Alexander Berger, Kyra von Horn, André Wegner, Alexander Böcker, Gérald Zabulon, Tobias Langenecker, Oliver Kohlbacher, Fredy Barneche, Detlef Weigel, Ulrich M Lauer, Michael Bitzer, Claude Becker
Plants Release Precursors of Histone Deacetylase Inhibitors to Suppress Growth of Competitors. The Plant cell 27 (11) (2015)
Katharina Kramer, Timo Sachsenberg, Benedikt M Beckmann, Saadia Qamar, Kum-Loong Boon, Matthias W Hentze, Oliver Kohlbacher, Henning Urlaub
Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins. Nature methods 11 (10) (2014)

Oliver Kohlbacher.css-eqlu8i{font-size:small;padding-left:4px;} (O Kohlbacher)

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Oliver Kohlbacher (O Kohlbacher)