David S Fischer (David Fischer)

ORCID

Publication Activity (10 Years)

Years Active: 2019-2023
Publications (10 Years): 14

Top Venues

Nature biotechnology

Nature communications

Molecular systems biology

Nature methods

Helmholtz Zentrum München

Helmholtz Zentrum München (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Helmholtz Zentrum München

Germany

PhD student in Computational Biology / Machine Learning

Education History

Helmholtz Zentrum München

Germany

PHD :: Institute of Computational Biology (ICB)

Publications

Laura D Martens, David S Fischer, Vicente A Yépez, Fabian Joachim Theis, Julien Gagneur
Modeling fragment counts improves single-cell ATAC-seq analysis. Nature methods (2023)
Felix Fischer, David S Fischer, Evan Biederstedt, Alexandra-Chloé Villani, Fabian Joachim Theis
Scaling cross-tissue single-cell annotation models. bioRxiv : the preprint server for biology (2023)
David S Fischer, Anna C Schaar, Fabian Joachim Theis
Modeling intercellular communication in tissues using spatial graphs of cells. Nature biotechnology (2022)
Andreas-David Brunner, Marvin Thielert, Catherine Vasilopoulou, Constantin Ammar, Fabian Coscia, Andreas Mund, Ole B Hoerning, Nicolai Bache, Amalia Apalategui, Markus Lubeck, Sabrina Richter, David S Fischer, Oliver Raether, Melvin A Park, Florian Meier, Fabian Joachim Theis, Matthias Mann
Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation. Molecular systems biology 18 (3) (2022)
Bob A Hersbach, David S Fischer, Giacomo Masserdotti, null Deeksha, Karolina Mojžišová, Thomas Waltzhöni, Diego Rodriguez-Terrones, Matthias Heinig, Fabian Joachim Theis, Magdalena Götz, Stefan H Stricker
Probing cell identity hierarchies by fate titration and collision during direct reprogramming. Molecular systems biology 18 (9) (2022)
Giovanni Palla, Hannah Spitzer, Michal Klein, David S Fischer, Anna Christina Schaar, Louis Benedikt Kuemmerle, Sergei Rybakov, Ignacio L Ibarra, Olle Holmberg, Isaac Virshup, Mohammad Lotfollahi, Sabrina Richter, Fabian Joachim Theis
Squidpy: a scalable framework for spatial omics analysis. Nature methods 19 (2) (2022)
Giovanni Palla, David S Fischer, Aviv Regev, Fabian Joachim Theis
Spatial components of molecular tissue biology. Nature biotechnology 40 (3) (2022)
Anna Danese, Maria L Richter, Kridsadakorn Chaichoompu, David S Fischer, Fabian Joachim Theis, Maria Colomé-Tatché
EpiScanpy: integrated single-cell epigenomic analysis. Nature communications 12 (1) (2021)
David S Fischer, Meshal Ansari, Karolin I Wagner, Sebastian Jarosch, Yiqi Huang, Christoph H Mayr, Maximilian Strunz, Niklas J Lang, Elvira D'Ippolito, Monika Hammel, Laura Mateyka, Simone Weber, Lisa S Wolff, Klaus Witter, Isis E Fernandez, Gabriela Leuschner, Katrin Milger, Marion Frankenberger, Lorenz Nowak, Katharina Heinig-Menhard, Ina Koch, Mircea G Stoleriu, Anne Hilgendorff, Jürgen Behr, Andreas Pichlmair, Benjamin Schubert, Fabian Joachim Theis, Dirk H Busch, Herbert B Schiller, Kilian Schober
Single-cell RNA sequencing reveals ex vivo signatures of SARS-CoV-2-reactive T cells through 'reverse phenotyping'. Nature communications 12 (1) (2021)
David S Fischer, Leander Dony, Martin König, Abdul Moeed, Luke Zappia, Lukas Heumos, Sophie Tritschler, Olle Holmberg, Hananeh Aliee, Fabian Joachim Theis
Sfaira accelerates data and model reuse in single cell genomics. Genome biology 22 (1) (2021)
David S Fischer, Yihan Wu, Benjamin Schubert, Fabian Joachim Theis
Predicting antigen specificity of single T cells based on TCR CDR3 regions. Molecular systems biology 16 (8) (2021)
Lisa Suwandhi, Irem Altun, Ruth Karlina, Viktorian Miok, Tobias Wiedemann, David S Fischer, Thomas Walzthoeni, Christina Lindner, Anika Böttcher, Silke S Heinzmann, Andreas Israel, Ahmed Elagamy Mohamed Mahmoud Khalil, Alexander Braun, Ines Pramme-Steinwachs, Ingo Burtscher, Philippe Schmitt-Kopplin, Matthias Heinig, Martin Elsner, Heiko Lickert, Fabian Joachim Theis, Siegfried Ussar
Asc-1 regulates white versus beige adipocyte fate in a subcutaneous stromal cell population. Nature communications 12 (1) (2021)
Ruth Karlina, Dominik Lutter, Viktorian Miok, David S Fischer, Irem Altun, Theresa Schöttl, Kenji Schorpp, Andreas Israel, Cheryl Cero, James W Johnson, Ingrid Kapser-Fischer, Anika Böttcher, Susanne Keipert, Annette Feuchtinger, Elisabeth Graf, Tim Strom, Axel Walch, Heiko Lickert, Thomas Walzthoeni, Matthias Heinig, Fabian J Theis, Cristina García-Cáceres, Aaron M Cypess, Siegfried Ussar
Identification and characterization of distinct brown adipocyte subtypes in C57BL/6J mice. Life science alliance 4 (1) (2020)
David S Fischer, Anna K Fiedler, Eric M Kernfeld, Ryan M J Genga, Aimée Bastidas-Ponce, Mostafa Bakhti, Heiko Lickert, Jan Hasenauer, René Maehr, Fabian Joachim Theis
Inferring population dynamics from single-cell RNA-sequencing time series data. Nature biotechnology 37 (4) (2019)

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Publication Activity (10 Years)

Top Topics

Top Venues

David S Fischer (David Fischer)