Brian D Gregory

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 24

Top Topics

Oxidative Stress

Top Venues

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Bishwas Sharma, Ganesan Govindan, Yongfang Li, Ramanjulu Sunkar, Brian D Gregory
RNA N 6 -Methyladenosine Affects Copper-Induced Oxidative Stress Response in Arabidopsis thaliana . Non-coding RNA 10 (1) (2024)
You Wu, Wenna Shao, Mengxiao Yan, Yuqin Wang, Pengfei Xu, Guoqiang Huang, Xiaofei Li, Brian D Gregory, Jun Yang, Hongxia Wang, Juan R Alvarez-Dominguez
Transfer learning enables identification of multiple types of RNA modifications using nanopore direct RNA sequencing. Nature communications 15 (1) (2024)
Bishwas Sharma, Ganesan Govindan, Yongfang Li, Ramanjulu Sunkar, Brian D Gregory
RNA N 6 -Methyladenosine Affects Copper-Induced Oxidative Stress Response in Arabidopsis thaliana . Non-coding RNA 10 (1) (2024)
You Wu, Wenna Shao, Mengxiao Yan, Yuqin Wang, Pengfei Xu, Guoqiang Huang, Xiaofei Li, Brian D Gregory, Jun Yang, Hongxia Wang, Juan R Alvarez-Dominguez
Transfer learning enables identification of multiple types of RNA modifications using nanopore direct RNA sequencing. Nature communications 15 (1) (2024)
Bishwas Sharma, Ganesan Govindan, Yongfang Li, Ramanjulu Sunkar, Brian D Gregory
RNA N 6 -Methyladenosine Affects Copper-Induced Oxidative Stress Response in Arabidopsis thaliana . Non-coding RNA 10 (1) (2024)
Rong Guo, Brian D Gregory
PELOTA and HBS1 suppress co-translational messenger RNA decay in Arabidopsis. Plant direct 7 (12) (2023)
Nancy A Eckardt, Michael J Axtell, Andrea Barta, Xuemei Chen, Brian D Gregory, Hongwei Guo, Pablo Andrés Manavella, Rebecca A Mosher, Blake C Meyers
Focus on RNA biology. The Plant cell (2023)
Rong Guo, Brian D Gregory
PELOTA and HBS1 suppress co-translational messenger RNA decay in Arabidopsis. Plant direct 7 (12) (2023)
Wil Prall, Diep Ray Ganguly, Brian D Gregory
The covalent nucleotide modifications within plant mRNAs: What we know, how we find them, and what should be done in the future. The Plant cell (2023)
Wil Prall, Arsheed H Sheikh, Jérémie Bazin, Jean Bigeard, Marilia A Trapp, Martin D Crespi, Heribert Hirt, Brian D Gregory
Pathogen-induced m6A dynamics affect plant immunity. The Plant cell (2023)
Rong Guo, Juan R Alvarez-Dominguez, Brian D Gregory
The identification of conserved sequence features of co-translationally decayed mRNAs and upstream open reading frames in angiosperm transcriptomes. Plant direct 7 (1) (2023)
Rong Guo, Juan R Alvarez-Dominguez, Brian D Gregory
The identification of conserved sequence features of co-translationally decayed mRNAs and upstream open reading frames in angiosperm transcriptomes. Plant direct 7 (1) (2023)
Ganesan Govindan, Bishwas Sharma, Yong-Fang Li, Christopher D Armstrong, Pandrangaiah Merum, Jai S Rohila, Brian D Gregory, Ramanjulu Sunkar
mRNA N 6 -methyladenosine is critical for cold tolerance in Arabidopsis. The Plant journal : for cell and molecular biology 111 (4) (2022)
Kyle Palos, Anna C Nelson Dittrich, Li'ang Yu, Jordan R Brock, Caylyn E Railey, Hsin-Yen Larry Wu, Ewelina Sokolowska, Aleksandra Skirycz, Polly Yingshan Hsu, Brian D Gregory, Eric Lyons, Mark A Beilstein, Andrew D L Nelson
Identification and functional annotation of long intergenic non-coding RNAs in Brassicaceae. The Plant cell 34 (9) (2022)
Xia Hua, Nathan D Berkowitz, Matthew R Willmann, Juan R Alvarez-Dominguez, Eric Lyons, Brian D Gregory
Global Analysis of RNA-Dependent RNA Polymerase-Dependent Small RNAs Reveals New Substrates and Functions for These Proteins and SGS3 in Arabidopsis. Non-coding RNA 7 (2) (2021)
Carolyn A Felix, Diana J Slater, James W Davenport, Juan R Alvarez-Dominguez, Brian D Gregory, Marilyn M Li, Eric F Rappaport, Nai Kong V Cheung
KMT2A-MAML2 rearrangement emerged and regressed during neuroblastoma therapy without leukemia after 12.8-year follow-up. Pediatric blood & cancer 69 (1) (2021)
Mengge Shan, Xinjun Ji, Kevin A Janssen, Ian M Silverman, Jesse Humenik, Ben A Garcia, Stephen A Liebhaber, Brian D Gregory
Dynamic changes in RNA-protein interactions and RNA secondary structure in mammalian erythropoiesis. Life science alliance 4 (9) (2021)
Pavel P Kuksa, Alexandre Amlie-Wolf, Yih-Chii Hwang, Otto Valladares, Brian D Gregory, Li-San Wang
HIPPIE2: a method for fine-scale identification of physically interacting chromatin regions. NAR genomics and bioinformatics 2 (2) (2020)
Susheel Sagar Bhat, Dawid Bielewicz, Tomasz Gulanicz, Zsuzsanna Bodi, Juan R Alvarez-Dominguez, Stephen J Anderson, Lukasz Szewc, Mateusz Bajczyk, Jakub Dolata, Natalia Grzelak, Dariusz Jan Smolinski, Brian D Gregory, Rupert G Fray, Artur Jarmolowski, Zofia Szweykowska-Kulinska
mRNA adenosine methylase (MTA) deposits m6A on pri-miRNAs to modulate miRNA biogenesis in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America 117 (35) (2020)
Marianne C Kramer, Kevin A Janssen, Kyle Palos, Andrew D L Nelson, Lee E Vandivier, Benjamin A Garcia, Eric Lyons, Mark A Beilstein, Brian D Gregory
N6-methyladenosine and RNA secondary structure affect transcript stability and protein abundance during systemic salt stress in Arabidopsis. Plant direct 4 (7) (2020)
Xuan Zhang, Chenyi Xue, Jennie Lin, Jane F Ferguson, Amber Weiner, Wen Liu, Yumiao Han, Christine Hinkle, Wenjun Li, Hongfeng Jiang, Sager Gosai, Melanie Hachet, Benjamin A Garcia, Brian D Gregory, Raymond E Soccio, John B Hogenesch, Patrick Seale, Mingyao Li, Muredach P Reilly
Interrogation of nonconserved human adipose lincRNAs identifies a regulatory role of linc-ADAL in adipocyte metabolism. Science translational medicine 10 (446) (2019)
Atul Kakrana, Sandra Marisa Mathioni, Kun Huang, Reza K Hammond, Lee Vandivier, Parth Patel, Siwaret Arikit, Olga Shevchenko, Alex E Harkess, Bruce Kingham, Brian D Gregory, James H Leebens-Mack, Blake C Meyers
Plant 24-nt reproductive phasiRNAs from intramolecular duplex mRNAs in diverse monocots. Genome research 28 (9) (2018)
Seth D Kasowitz, Jun Ma, Stephen J Anderson, N Adrian Leu, Yang Xu, Brian D Gregory, Richard M Schultz, P Jeremy Wang
Nuclear m6A reader YTHDC1 regulates alternative polyadenylation and splicing during mouse oocyte development. PLoS genetics 14 (5) (2018)
Juan R Alvarez-Dominguez, Matthew R Willmann, Stephen J Anderson, Brian D Gregory
Genome-Wide Mapping of Uncapped and Cleaved Transcripts Reveals a Role for the Nuclear mRNA Cap-Binding Complex in Cotranslational RNA Decay in Arabidopsis. The Plant cell 28 (10) (2016)
Lee E Vandivier, Rafael Campos, Pavel P Kuksa, Ian M Silverman, Li-San Wang, Brian D Gregory
Chemical Modifications Mark Alternatively Spliced and Uncapped Messenger RNAs in Arabidopsis. The Plant cell 27 (11) (2015)