Alex E Harkess (Alex Harkess)

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 41

Top Topics

Dna Methylation

Top Venues

G3 (Bethesda, Md.)

Science (New York, N.Y.)

Genome biology and evolution

This page only lists publications with an associated author ORCID identifier.

Publications

Ellie E Armstrong, Ky L Bissell, H Sophia Fatima, Maya A Heikkinen, Anika Jessup, Maryam O Junaid, Dong H Lee, Emily C Lieb, Josef T Liem, Estelle M Martin, Mauricio Moreno, Khuslen Otgonbayar, Betsy W Romans, Kim Royar, Mary Beth Adler, David B Needle, Alex E Harkess, Joanna L Kelley, Jazlyn A Mooney, Alexis M Mychajliw
Chromosome-level assembly of the gray fox (Urocyon cinereoargenteus) confirms the basal loss of PRDM9 in Canidae. G3 (Bethesda, Md.) 14 (4) (2024)
Huiting Zhang, Itsuhiro Ko, Abigail Eaker, Sabrina Haney, Ninh Khuu, Kara M Ryan, Aaron B Appleby, Brendan Hoffmann, Henry Landis, Kenneth A Pierro, Noah Willsea, Heidi Hargarten, Alan E Yocca, Alex E Harkess, Loren Honaas, Stephen P Ficklin
A Haplotype-resolved, Chromosome-scale Genome for Malus domestica Borkh. 'WA 38'. G3 (Bethesda, Md.) (2024)
Alan Yocca, Mary Akinyuwa, Nick Bailey, Brannan Cliver, Harrison Estes, Abigail Guillemette, Omar Hasannin, Jennifer Hutchison, Wren Jenkins, Ishveen Kaur, Risheek Rahul Khanna, Madelene Loftin, Lauren Lopes, Erika Moore-Pollard, Oluwakemisola Olofintila, Gideon Oluwaseye Oyebode, Jinesh Patel, Parbati Thapa, Martin Waldinger, Jie Zhang, Qiong Zhang, Leslie Goertzen, Sarah B Carey, Heidi Hargarten, James Mattheis, Huiting Zhang, Teresa Jones, LoriBeth Boston, Jane Grimwood, Stephen Ficklin, Loren Honaas, Alex E Harkess
A chromosome-scale assembly for 'd'Anjou' pear. G3 (Bethesda, Md.) (2024)
Deborah Charlesworth, Alex E Harkess
Why should we study plant sex chromosomes? The Plant cell (2024)
Ellie E Armstrong, Ky L Bissell, H Sophia Fatima, Maya A Heikkinen, Anika Jessup, Maryam O Junaid, Dong H Lee, Emily C Lieb, Josef T Liem, Estelle M Martin, Mauricio Moreno, Khuslen Otgonbayar, Betsy W Romans, Kim Royar, Mary Beth Adler, David B Needle, Alex E Harkess, Joanna L Kelley, Jazlyn A Mooney, Alexis M Mychajliw
Chromosome-level assembly of the gray fox (Urocyon cinereoargenteus) confirms the basal loss of PRDM9 in Canidae. G3 (Bethesda, Md.) 14 (4) (2024)
Ellie E Armstrong, Ky L Bissell, H Sophia Fatima, Maya A Heikkinen, Anika Jessup, Maryam O Junaid, Dong H Lee, Emily C Lieb, Josef T Liem, Estelle M Martin, Mauricio Moreno, Khuslen Otgonbayar, Betsy W Romans, Kim Royar, Mary Beth Adler, David B Needle, Alex E Harkess, Joanna L Kelley, Jazlyn A Mooney, Alexis M Mychajliw
Chromosome-level assembly of the gray fox (Urocyon cinereoargenteus) confirms the basal loss of PRDM9 in Canidae. G3 (Bethesda, Md.) 14 (4) (2024)
Ellie E Armstrong, Ky L Bissell, H Sophia Fatima, Maya A Heikkinen, Anika Jessup, Maryam O Junaid, Dong H Lee, Emily C Lieb, Josef T Liem, Estelle M Martin, Mauricio Moreno, Khuslen Otgonbayar, Betsy W Romans, Kim Royar, Mary Beth Adler, David B Needle, Alex E Harkess, Joanna L Kelley, Jazlyn A Mooney, Alexis M Mychajliw
Chromosome-level assembly of the gray fox (Urocyon cinereoargenteus) confirms the basal loss of PRDM9 in Canidae. G3 (Bethesda, Md.) (2024)
Deborah Charlesworth, Alex E Harkess
Why should we study plant sex chromosomes? The Plant cell 36 (5) (2024)
Deborah Charlesworth, Alex E Harkess
Why should we study plant sex chromosomes? The Plant cell 36 (5) (2024)
Alan Yocca, Mary Akinyuwa, Nick Bailey, Brannan Cliver, Harrison Estes, Abigail Guillemette, Omar Hasannin, Jennifer Hutchison, Wren Jenkins, Ishveen Kaur, Risheek Rahul Khanna, Madelene Loftin, Lauren Lopes, Erika Moore-Pollard, Oluwakemisola Olofintila, Gideon Oluwaseye Oyebode, Jinesh Patel, Parbati Thapa, Martin Waldinger, Jie Zhang, Qiong Zhang, Leslie Goertzen, Sarah B Carey, Heidi Hargarten, James Mattheis, Huiting Zhang, Teresa Jones, LoriBeth Boston, Jane Grimwood, Stephen Ficklin, Loren Honaas, Alex E Harkess
A chromosome-scale assembly for 'd'Anjou' pear. G3 (Bethesda, Md.) 14 (3) (2024)
Deborah Charlesworth, Alex E Harkess
Why should we study plant sex chromosomes? The Plant cell 36 (5) (2024)
Alan Yocca, Mary Akinyuwa, Nick Bailey, Brannan Cliver, Harrison Estes, Abigail Guillemette, Omar Hasannin, Jennifer Hutchison, Wren Jenkins, Ishveen Kaur, Risheek Rahul Khanna, Madelene Loftin, Lauren Lopes, Erika Moore-Pollard, Oluwakemisola Olofintila, Gideon Oluwaseye Oyebode, Jinesh Patel, Parbati Thapa, Martin Waldinger, Jie Zhang, Qiong Zhang, Leslie Goertzen, Sarah B Carey, Heidi Hargarten, James Mattheis, Huiting Zhang, Teresa Jones, LoriBeth Boston, Jane Grimwood, Stephen Ficklin, Loren Honaas, Alex E Harkess
A chromosome-scale assembly for 'd'Anjou' pear. G3 (Bethesda, Md.) 14 (3) (2024)
Ricardo De La Peña, Hannah Hodgson, Jack Chun-Ting Liu, Michael J Stephenson, Azahara C Martín, Charlotte Owen, Alex E Harkess, James H Leebens-Mack, Luis E Jimenez, Anne Osbourn, Elizabeth S Sattely
Complex scaffold remodeling in plant triterpene biosynthesis. Science (New York, N.Y.) 379 (6630) (2023)
Ricardo De La Peña, Hannah Hodgson, Jack Chun-Ting Liu, Michael J Stephenson, Azahara C Martín, Charlotte Owen, Alex E Harkess, James H Leebens-Mack, Luis E Jimenez, Anne Osbourn, Elizabeth S Sattely
Complex scaffold remodeling in plant triterpene biosynthesis. Science (New York, N.Y.) 379 (6630) (2023)
Ricardo De La Peña, Hannah Hodgson, Jack Chun-Ting Liu, Michael J Stephenson, Azahara C Martín, Charlotte Owen, Alex E Harkess, James H Leebens-Mack, Luis E Jimenez, Anne Osbourn, Elizabeth S Sattely
Complex scaffold remodeling in plant triterpene biosynthesis. Science (New York, N.Y.) 379 (6630) (2023)
Ricardo De La Peña, Hannah Hodgson, Jack Chun-Ting Liu, Michael J Stephenson, Azahara C Martín, Charlotte Owen, Alex E Harkess, James H Leebens-Mack, Luis E Jimenez, Anne Osbourn, Elizabeth S Sattely
Complex scaffold remodeling in plant triterpene biosynthesis. Science (New York, N.Y.) 379 (6630) (2023)
Ricardo De La Peña, Hannah Hodgson, Jack Chun-Ting Liu, Michael J Stephenson, Azahara C Martín, Charlotte Owen, Alex E Harkess, James H Leebens-Mack, Luis E Jimenez, Anne Osbourn, Elizabeth S Sattely
Complex scaffold remodeling in plant triterpene biosynthesis. Science (New York, N.Y.) 379 (6630) (2023)
Michael D Purugganan, Alex E Harkess, Anah Soble, Megan Van Etten, James Leebens-Mack, Regina S Baucom
Interchromosomal linkage disequilibrium and linked fitness cost loci associated with selection for herbicide resistance. The New phytologist (2023)
Makenzie E Mabry, R Shawn Abrahams, Ihsan A Al-Shehbaz, William J Baker, Simon Barak, Michael S Barker, Russell L Barrett, Aleksandra Beric, Samik Bhattacharya, Sarah B Carey, Gavin C Conant, John G Conran, Maheshi Dassanayake, Patrick P Edger, Jocelyn C Hall, Yue Hao, Kasper P Hendriks, Julian M Hibberd, Graham John King, Daniel J Kliebenstein, Marcus A Koch, Ilia J Leitch, Frederic Lens, Martin A Lysak, Alex C McAlvay, Michael T W McKibben, Francesco Mercati, Richard C Moore, Klaus Mummenhoff, Daniel J Murphy, Lachezar A Nikolov, Michael T Pisias, Eric H Roalson, Michael Eric Schranz, Shawn K Thomas, Qingyi Yu, Alan E Yocca, Joseph Chris Pires, Alex E Harkess
Complementing model species with model clades. The Plant cell (2023)
Arielle R Johnson, Yuanzheng Yue, Sarah B Carey, Se Jin Park, Lars H Kruse, Ashley Bao, Asher Pasha, Alex E Harkess, Nicholas J Provart, Gaurav D Moghe, Margaret H Frank
Chromosome-level Genome Assembly of Euphorbia peplus, a Model System for Plant Latex, Reveals that Relative Lack of Ty3 Transposons Contributed to Its Small Genome Size. Genome biology and evolution 15 (3) (2023)
Ricardo De La Peña, Hannah Hodgson, Jack Chun-Ting Liu, Michael J Stephenson, Azahara C Martín, Charlotte Owen, Alex E Harkess, James H Leebens-Mack, Luis E Jimenez, Anne Osbourn, Elizabeth S Sattely
Complex scaffold remodeling in plant triterpene biosynthesis. Science (New York, N.Y.) 379 (6630) (2023)
Michael D Purugganan, Alex E Harkess, Anah Soble, Megan Van Etten, James Leebens-Mack, Regina S Baucom
Inter-chromosomal linkage disequilibrium and linked fitness cost loci associated with selection for herbicide resistance. The New phytologist (2023)
Arielle R Johnson, Yuanzheng Yue, Sarah B Carey, Se Jin Park, Lars H Kruse, Ashley Bao, Asher Pasha, Alex E Harkess, Nicholas J Provart, Gaurav D Moghe, Margaret H Frank
Chromosome-level genome assembly of Euphorbia peplus, a model system for plant latex, reveals that relative lack of Ty3 transposons contributed to its small genome size. Genome biology and evolution (2023)
James Reed, Anastasia Orme, Amr El-Demerdash, Charlotte Owen, Laetitia B B Martin, Rajesh Chandra Misra, Shingo Kikuchi, Martin Rejzek, Azahara C Martín, Alex E Harkess, James H Leebens-Mack, Thomas Louveau, Michael J Stephenson, Anne Osbourn
Elucidation of the pathway for biosynthesis of saponin adjuvants from the soapbark tree. Science (New York, N.Y.) 379 (6638) (2023)
John T Lovell, Avinash Sreedasyam, Michael Eric Schranz, Melissa A Wilson, Joseph W Carlson, Alex E Harkess, David Mark Emms, David M Goodstein, Jeremy Schmutz
GENESPACE tracks regions of interest and gene copy number variation across multiple genomes. eLife 11 (2022)
Kevin L Cox, Jordan Manchego, Blake C Meyers, Kirk James Czymmek, Alex E Harkess
Automated imaging of duckweed growth and development. Plant direct 6 (9) (2022)
Sarah B Carey, Laramie Aközbek, Alex E Harkess
The contributions of Nettie Stevens to the field of sex chromosome biology. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 377 (1850) (2022)
Awais Khan, Sarah B Carey, Alicia Serrano, Huiting Zhang, Heidi Hargarten, Haley Hale, Alex E Harkess, Loren A Honaas
A phased, chromosome-scale genome of 'Honeycrisp' apple ( Malus domestica ). GigaByte (Hong Kong, China) 2022 (2022)
Awais Khan, Sarah B Carey, Alicia Serrano, Huiting Zhang, Heidi Hargarten, Haley Hale, Alex E Harkess, Loren A Honaas
A phased, chromosome-scale genome of 'Honeycrisp' apple ( Malus domestica ). GigaByte (Hong Kong, China) 2022 (2022)
Kyle W Swentowsky, Jonathan I Gent, Elizabeth G Lowry, Veit Schubert, Xia Ran, Kuo-Fu Tseng, Alex E Harkess, Weihong Qiu, R Kelly Dawe
Distinct kinesin motors drive two types of maize neocentromeres. Genes & development 34 (17-18) (2020)
Alex E Harkess, Kun Huang, Ron van der Hulst, Bart Tissen, Jeffrey Lewis Caplan, Aakash Koppula, Mona Batish, Blake C Meyers, James H Leebens-Mack
Sex Determination by Two Y-Linked Genes in Garden Asparagus. The Plant cell 32 (6) (2020)
Alex E Harkess
Small RNAs in the Maillot Jaune: Transcriptional Analysis of the Plant Cell Cycle. The Plant cell 31 (8) (2019)
Alex E Harkess
Smashing Barriers in Biolistic Plant Transformation. The Plant cell 31 (2) (2019)
Alex E Harkess
Blocking the Guards: The ALY1 Nuclear Export Protein Is Required for DNA Methylation Machinery to Function. The Plant cell 31 (4) (2019)
Margaret H Frank, Alex E Harkess, Jacob D Washburn
James A. Birchler. The Plant cell 31 (10) (2019)
Alex E Harkess
Six Days, Seven Nights: The Transcriptional Speed of Seed Development. The Plant cell 31 (6) (2019)
Alex E Harkess
How Resurrection Plants Survive Being Hung Out to Dry. The Plant cell 30 (12) (2018)
Alex E Harkess
Handling the Heat: Methylome Variation Underlying Heat Tolerance in Cotton. The Plant cell 30 (9) (2018)
Alex E Harkess, Margaret H Frank
Blake C. Meyers. The Plant cell 30 (7) (2018)
Atul Kakrana, Sandra Marisa Mathioni, Kun Huang, Reza K Hammond, Lee Vandivier, Parth Patel, Siwaret Arikit, Olga Shevchenko, Alex E Harkess, Bruce Kingham, Brian D Gregory, James H Leebens-Mack, Blake C Meyers
Plant 24-nt reproductive phasiRNAs from intramolecular duplex mRNAs in diverse monocots. Genome research 28 (9) (2018)
Alex E Harkess, Francesco Mercati, Loredana Abbate, Michael McKain, J Chris Pires, Tea Sala, Francesco Sunseri, Agostino Falavigna, Jim Leebens-Mack
Retrotransposon Proliferation Coincident with the Evolution of Dioecy in Asparagus. G3 (Bethesda, Md.) 6 (9) (2016)