Christopher P Barnes (Chris P Barnes, Chris Barnes)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 30

Top Venues

Nature communications

Nature genetics

PLoS computational biology

ACS synthetic biology

Imperial College London (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

Imperial College London

United Kingdom

PHD :: Physics

Publications

Zhao Cheng, Darren P Ennis, Bingxin Lu, Hasan B Mirza, Chishimba Sokota, Baljeet Kaur, Naveena Singh, Olivia Le Saux, Giorgia Russo, Gaia Giannone, Laura A Tookman, Jonathan Krell, Christopher P Barnes, Jackie McDermott, Iain A McNeish
The genomic trajectory of ovarian high-grade serous carcinoma can be observed in STIC lesions. The Journal of pathology 264 (1) (2024)
Jack W Rutter, Linda Dekker, Chania Clare, Zoe F Slendebroek, Kimberley A Owen, Julie A K McDonald, Sean P Nair, Alex J H Fedorec, Christopher P Barnes
A bacteriocin expression platform for targeting pathogenic bacterial species. Nature communications 15 (1) (2024)
Alex J H Fedorec, Neythen J Treloar, Ke Yan Wen, Linda Dekker, Qing Hsuan Ong, Gabija Jurkeviciute, Enbo Lyu, Jack W Rutter, Kathleen J Y Zhang, Luca Rosa, Alexey Zaikin, Christopher P Barnes
Emergent digital bio-computation through spatial diffusion and engineered bacteria. Nature communications 15 (1) (2024)
Jack W Rutter, Linda Dekker, Chania Clare, Zoe F Slendebroek, Kimberley A Owen, Julie A K McDonald, Sean P Nair, Alex J H Fedorec, Christopher P Barnes
A bacteriocin expression platform for targeting pathogenic bacterial species. Nature communications 15 (1) (2024)
Alex J H Fedorec, Neythen J Treloar, Ke Yan Wen, Linda Dekker, Qing Hsuan Ong, Gabija Jurkeviciute, Enbo Lyu, Jack W Rutter, Kathleen J Y Zhang, Luca Rosa, Alexey Zaikin, Christopher P Barnes
Emergent digital bio-computation through spatial diffusion and engineered bacteria. Nature communications 15 (1) (2024)
Zhao Cheng, Darren P Ennis, Bingxin Lu, Hasan B Mirza, Chishimba Sokota, Baljeet Kaur, Naveena Singh, Olivia Le Saux, Giorgia Russo, Gaia Giannone, Laura A Tookman, Jonathan Krell, Christopher P Barnes, Jackie McDermott, Iain A McNeish
The genomic trajectory of ovarian high-grade serous carcinoma can be observed in STIC lesions. The Journal of pathology (2024)
Kasper Karlsson, Moritz Jakob Przybilla, Eran Kotler, Aziz Khan, Hang Xu, Kremena Karagyozova, Alexandra Sockell, Wing H Wong, Katherine Liu, Amanda Mah, Yuan-Hung Lo, Bingxin Lu, Kathleen E Houlahan, Zhicheng Ma, Carlos J Suarez, Christopher P Barnes, Calvin J Kuo, Christina Curtis
Deterministic evolution and stringent selection during preneoplasia. Nature (2023)
Bingxin Lu, Kit Curtius, Trevor A Graham, Ziheng Yang, Christopher P Barnes
CNETML: maximum likelihood inference of phylogeny from copy number profiles of multiple samples. Genome biology 24 (1) (2023)
Behzad D Karkaria, Angelika Manhart, Alex J H Fedorec, Christopher P Barnes
Chaos in synthetic microbial communities. PLoS computational biology 18 (10) (2022)
Calum Gabbutt, Ryan O Schenck, Daniel J Weisenberger, Christopher Kimberley, Alison Berner, Jacob Househam, Eszter Lakatos, Mark Robertson-Tessi, Isabel Martin, Roshani Patel, Susan K Clark, Andrew Latchford, Christopher P Barnes, Simon J Leedham, Alexander A R A Anderson, Trevor A Graham, Darryl Shibata
Fluctuating methylation clocks for cell lineage tracing at high temporal resolution in human tissues. Nature biotechnology 40 (5) (2022)
Jacob Househam, Timon Heide, George D Cresswell, Inmaculada Spiteri, Chris Kimberley, Luis Zapata, Claire Lynn, Chela James, Maximilian Mossner, Javier Fernandez-Mateos, Alessandro Vinceti, Ann-Marie C Baker, Calum Gabbutt, Alison Berner, Melissa Schmidt, Bingjie Chen, Eszter Lakatos, Vinaya Gunasri, Daniel Nichol, Helena Costa, Miriam Mitchinson, Daniele Ramazzotti, Benjamin Werner, Francesco Iorio, Marnix Jansen, Giulio Caravagna, Christopher P Barnes, Darryl Shibata, John A Bridgewater, Manuel Rodriguez, Luca Magnani, Andrea Sottoriva, Trevor A Graham
Phenotypic plasticity and genetic control in colorectal cancer evolution. Nature 611 (7937) (2022)
Neythen J Treloar, Nathan Braniff, Brian P Ingalls, Christopher P Barnes
Deep reinforcement learning for optimal experimental design in biology. PLoS computational biology 18 (11) (2022)
Yannik Bollen, Ellen Stelloo, Petra van Leenen, Myrna van den Bos, Bas Ponsioen, Bingxin Lu, Markus J van Roosmalen, Ana C F Bolhaqueiro, Christopher Kimberley, Maximilian Mossner, William C H Cross, Nicolle J M Besselink, Bastiaan R Van der Roest, Sander Boymans, Koen C Oost, Sippe G de Vries, Holger Rehmann, Edwin Cuppen, Susanne M A Lens, Geert J P L Kops, Wigard P Kloosterman, Leon W M M Terstappen, Christopher P Barnes, Andrea Sottoriva, Trevor A Graham, Hugo J G Snippert
Reconstructing single-cell karyotype alterations in colorectal cancer identifies punctuated and gradual diversification patterns. Nature genetics 53 (8) (2021)
Alex J H Fedorec, Clare M Robinson, Ke Yan Wen, Christopher P Barnes
Correction to "FlopR: An Open Source Software Package for Calibration and Normalization of Plate Reader and Flow Cytometry Data". ACS synthetic biology 10 (2) (2021)
Behzad D Karkaria, Alex J H Fedorec, Christopher P Barnes
Automated design of synthetic microbial communities. Nature communications 12 (1) (2021)
Alex J H Fedorec, Behzad D Karkaria, Michael Sulu, Christopher P Barnes
Single strain control of microbial consortia. Nature communications 12 (1) (2021)
Marc J Williams, Luis Zapata, Benjamin Werner, Christopher P Barnes, Andrea Sottoriva, Trevor A Graham
Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios. eLife 9 (2020)
Eszter Lakatos, Marc J Williams, Ryan O Schenck, William C H Cross, Jacob Househam, Luis Zapata, Benjamin Werner, Chandler Gatenbee, Mark Robertson-Tessi, Christopher P Barnes, Alexander A R A Anderson, Andrea Sottoriva, Trevor A Graham
Evolutionary dynamics of neoantigens in growing tumors. Nature genetics 52 (10) (2020)
Neythen J Treloar, Alex J H Fedorec, Brian Ingalls, Christopher P Barnes
Deep reinforcement learning for the control of microbial co-cultures in bioreactors. PLoS computational biology 16 (4) (2020)
Benjamin Werner, Jack Case, Marc J Williams, Ketevan Chkhaidze, Daniel Temko, Javier Fernández-Mateos, George D Cresswell, Daniel Nichol, William Cross, Inmaculada Spiteri, Weini Huang, Ian P M Tomlinson, Christopher P Barnes, Trevor A Graham, Andrea Sottoriva
Measuring single cell divisions in human tissues from multi-region sequencing data. Nature communications 11 (1) (2020)
Alex J H Fedorec, Clare M Robinson, Ke Yan Wen, Christopher P Barnes
FlopR: An Open Source Software Package for Calibration and Normalization of Plate Reader and Flow Cytometry Data. ACS synthetic biology 9 (9) (2020)
Giulio Caravagna, Timon Heide, Marc J Williams, Luis Zapata, Daniel Nichol, Ketevan Chkhaidze, William Cross, George D Cresswell, Benjamin Werner, Ahmet Acar, Louis Chesler, Christopher P Barnes, Guido Sanguinetti, Trevor A Graham, Andrea Sottoriva
Subclonal reconstruction of tumors by using machine learning and population genetics. Nature genetics 52 (9) (2020)
Benjamin Werner, Marc J Williams, Christopher P Barnes, Trevor A Graham, Andrea Sottoriva
Reply to 'Currently available bulk sequencing data do not necessarily support a model of neutral tumor evolution'. Nature genetics 50 (12) (2019)
Jack W Rutter, Tanel Ozdemir, Evgeniy R Galimov, Leonor M Quintaneiro, Luca Rosa, Geraint M Thomas, Filipe Cabreiro, Christopher P Barnes
Detecting Changes in the Caenorhabditis elegans Intestinal Environment Using an Engineered Bacterial Biosensor. ACS synthetic biology 8 (12) (2019)
Ann-Marie Baker, Calum Gabbutt, Marc J Williams, Biancastella Cereser, Noor Jawad, Manuel Rodriguez-Justo, Marnix Jansen, Christopher P Barnes, Benjamin D Simons, Stuart Ac McDonald, Trevor A Graham, Nicholas A Wright
Crypt fusion as a homeostatic mechanism in the human colon. Gut 68 (11) (2019)
Marc J Williams, Benjamin Werner, Timon Heide, Christopher P Barnes, Trevor A Graham, Andrea Sottoriva
Reply to 'Revisiting signatures of neutral tumor evolution in the light of complexity of cancer genomic data'. Nature genetics 50 (12) (2019)
Joshua Russell-Buckland, Christopher P Barnes, Ilias Tachtsidis
A Bayesian framework for the analysis of systems biology models of the brain. PLoS computational biology 15 (4) (2019)
Marc J Williams, Benjamin Werner, Timon Heide, Christina Curtis, Christopher P Barnes, Andrea Sottoriva, Trevor A Graham
Quantification of subclonal selection in cancer from bulk sequencing data. Nature genetics 50 (6) (2018)
Mae L Woods, Christopher P Barnes
Mechanistic Modelling and Bayesian Inference Elucidates the Variable Dynamics of Double-Strand Break Repair. PLoS computational biology 12 (10) (2016)
Miriam Leon, Mae L Woods, Alex J H Fedorec, Christopher P Barnes
A computational method for the investigation of multistable systems and its application to genetic switches. BMC systems biology 10 (1) (2016)

Christopher P Barnes.css-eqlu8i{font-size:small;padding-left:4px;} (Chris P Barnes, Chris Barnes)

Publication Activity (10 Years)

Top Topics

Top Venues

Christopher P Barnes (Chris P Barnes, Chris Barnes)